Gchil3408.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3408.t1
Unique NameGchil3408.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:1007817..1008464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006813234.1
Preferred nameWDSUB1
PFAMsSAM_1,SAM_2,U-box,WD40
Max annot lvl33208|Metazoa
Evalue5.66e-07
EggNOG OGsKOG4155@1|root,KOG4155@2759|Eukaryota,38F9N@33154|Opisthokonta,3BHBH@33208|Metazoa
Descriptionubiquitin-protein transferase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3408Gchil3408Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 1007817..1008464 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3408.t1.start1Gchil3408.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 1007817..1007819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3408.t1.CDS1Gchil3408.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 1007817..1008464 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3408.t1.exon1Gchil3408.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 1007817..1008464 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3408.t1.stop1Gchil3408.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 1008462..1008464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3408.t1Gchil3408.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 1007817..1008464 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3408.t1 ID=Gchil3408.t1|Name=Gchil3408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=216bp
METSPPRPCPLPSVLVASNGGGAAPNVRTVADVQKWLADLGFSQYAHVFL
TNEVDGVILKTLTSEELRDDLLINNLRHRREILVAIARLVEEEASPDAQK
LPEHGRILDHLSNVRTYHSWISVGIQFLGFAVVTLRLSPNFRDTNLITAS
SIYFSLIGISALVYGVYRYKNVIGMIESSGPSTKHFSPDRVGVVSILLLA
FAAVVLTLTILALRD*
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spliced messenger RNA

>Gchil3408.t1 ID=Gchil3408.t1|Name=Gchil3408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000168_pilon:1007817..1008464+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACGTCTCCGCCCCGTCCCTGTCCCCTGCCAAGCGTTCTCGTGGC
TAGCAACGGCGGCGGGGCTGCCCCAAACGTACGCACGGTCGCGGATGTCC
AGAAATGGCTCGCTGACCTCGGTTTCTCCCAATACGCTCACGTCTTCCTC
ACCAACGAGGTCGACGGCGTCATTCTAAAGACTCTCACATCAGAAGAGCT
GCGCGACGATTTACTTATTAACAATCTTCGCCATCGACGAGAGATTCTCG
TCGCCATCGCCCGTTTGGTCGAAGAAGAGGCCTCTCCCGACGCTCAGAAA
CTTCCCGAACACGGTCGCATCTTAGATCATCTCTCCAACGTTCGTACCTA
TCACAGTTGGATAAGCGTCGGAATTCAGTTTCTCGGCTTTGCTGTTGTGA
CTCTTCGGCTCTCTCCTAACTTTCGTGACACGAATCTCATCACTGCCTCC
TCCATTTACTTCTCTCTCATCGGCATTTCAGCCCTGGTGTACGGCGTATA
TCGTTACAAAAATGTCATTGGCATGATTGAGTCCTCTGGCCCTTCCACAA
AGCACTTCAGCCCAGACCGTGTGGGCGTCGTATCAATTCTTTTACTTGCA
TTTGCAGCAGTTGTCCTCACACTAACAATACTTGCTCTACGCGATTAG
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protein sequence of Gchil3408.t1

>Gchil3408.t1 ID=Gchil3408.t1|Name=Gchil3408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=216bp
METSPPRPCPLPSVLVASNGGGAAPNVRTVADVQKWLADLGFSQYAHVFL
TNEVDGVILKTLTSEELRDDLLINNLRHRREILVAIARLVEEEASPDAQK
LPEHGRILDHLSNVRTYHSWISVGIQFLGFAVVTLRLSPNFRDTNLITAS
SIYFSLIGISALVYGVYRYKNVIGMIESSGPSTKHFSPDRVGVVSILLLA
FAAVVLTLTILALRD*
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mRNA from alignment at tig00000168_pilon:1007817..1008464+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3408.t1 ID=Gchil3408.t1|Name=Gchil3408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000168_pilon:1007817..1008464+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACGTCTCCGCCCCGTCCCTGTCCCCTGCCAAGCGTTCTCGTGGC
TAGCAACGGCGGCGGGGCTGCCCCAAACGTACGCACGGTCGCGGATGTCC
AGAAATGGCTCGCTGACCTCGGTTTCTCCCAATACGCTCACGTCTTCCTC
ACCAACGAGGTCGACGGCGTCATTCTAAAGACTCTCACATCAGAAGAGCT
GCGCGACGATTTACTTATTAACAATCTTCGCCATCGACGAGAGATTCTCG
TCGCCATCGCCCGTTTGGTCGAAGAAGAGGCCTCTCCCGACGCTCAGAAA
CTTCCCGAACACGGTCGCATCTTAGATCATCTCTCCAACGTTCGTACCTA
TCACAGTTGGATAAGCGTCGGAATTCAGTTTCTCGGCTTTGCTGTTGTGA
CTCTTCGGCTCTCTCCTAACTTTCGTGACACGAATCTCATCACTGCCTCC
TCCATTTACTTCTCTCTCATCGGCATTTCAGCCCTGGTGTACGGCGTATA
TCGTTACAAAAATGTCATTGGCATGATTGAGTCCTCTGGCCCTTCCACAA
AGCACTTCAGCCCAGACCGTGTGGGCGTCGTATCAATTCTTTTACTTGCA
TTTGCAGCAGTTGTCCTCACACTAACAATACTTGCTCTACGCGATTAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:1007817..1008464+

>Gchil3408.t1 ID=Gchil3408.t1|Name=Gchil3408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000168_pilon:1007817..1008464+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACGTCTCCGCCCCGTCCCTGTCCCCTGCCAAGCGTTCTCGTGGC
TAGCAACGGCGGCGGGGCTGCCCCAAACGTACGCACGGTCGCGGATGTCC
AGAAATGGCTCGCTGACCTCGGTTTCTCCCAATACGCTCACGTCTTCCTC
ACCAACGAGGTCGACGGCGTCATTCTAAAGACTCTCACATCAGAAGAGCT
GCGCGACGATTTACTTATTAACAATCTTCGCCATCGACGAGAGATTCTCG
TCGCCATCGCCCGTTTGGTCGAAGAAGAGGCCTCTCCCGACGCTCAGAAA
CTTCCCGAACACGGTCGCATCTTAGATCATCTCTCCAACGTTCGTACCTA
TCACAGTTGGATAAGCGTCGGAATTCAGTTTCTCGGCTTTGCTGTTGTGA
CTCTTCGGCTCTCTCCTAACTTTCGTGACACGAATCTCATCACTGCCTCC
TCCATTTACTTCTCTCTCATCGGCATTTCAGCCCTGGTGTACGGCGTATA
TCGTTACAAAAATGTCATTGGCATGATTGAGTCCTCTGGCCCTTCCACAA
AGCACTTCAGCCCAGACCGTGTGGGCGTCGTATCAATTCTTTTACTTGCA
TTTGCAGCAGTTGTCCTCACACTAACAATACTTGCTCTACGCGATTAG
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