Gchil3406.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3406.t1
Unique Name	Gchil3406.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:1004433..1005719 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT560CT
PFAMs	CMAS,Methyltransf_11,Methyltransf_23,Methyltransf_25
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC01662
KEGG ko	ko:K05928
KEGG Reaction	R07236,R07504,R10491,R10492
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00112
Evalue	1.04e-67
EggNOG OGs	COG0500@1\|root,KOG1269@2759\|Eukaryota
EC	2.1.1.95
Description	sterol 24-C-methyltransferase activity
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3406	Gchil3406	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 1004433..1005719 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3406.t1.start1	Gchil3406.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 1004433..1004435 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3406.t1.CDS1	Gchil3406.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 1004433..1005719 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3406.t1.exon1	Gchil3406.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 1004433..1005719 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3406.t1.stop1	Gchil3406.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 1005717..1005719 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3406.t1	Gchil3406.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 1004433..1005719 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:1004433..1005719+
coding sequence from alignment at tig00000168_pilon:1004433..1005719+

mRNA sequence

>Gchil3406.t1 ID=Gchil3406.t1|Name=Gchil3406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=429bp
MICFVSSSGAFTSRQLVPKILTKSPKFVAKPAIRVVGWHRIALPRMDAAA
PQLPNLFKLRTVEKVYVKRDASGVPILHMKEVHRRSIPLWLLVIIAAAVT
WVLRRFMMLKHLSRKYVRQDLKNEIADFYDKRSAAWETVWGEHMHHGLYD
IVNRKKMKGQLAQIRTMSELLKFGGAMDLSLSPNSRILDLGCGIGGASRF
LARHFGEDCHVTGITLSSYQANRANELNEKKGLETRVKNEVKDALNSGFP
DESFEIVWSLESGEHIENKQLLMNECARMLKPGGRLLMLVWCLRESTPSF
TLTERYSIRRIMEEYVLPTLSPPSEYATEMVRAGFRDVKSEDWTKRGAPF
WGEVVWSTFFNPLGWKMLLKYGWPLIRSALAMRHVMSGIKQGTFRLVAFS
ATKASVEDIEKEKAVVGTLGCRDENDLP*

spliced messenger RNA

>Gchil3406.t1 ID=Gchil3406.t1|Name=Gchil3406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000168_pilon:1004433..1005719+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTGCTTTGTTTCTTCGTCCGGAGCATTCACTTCTCGGCAGCTCGT
TCCAAAGATATTGACTAAATCACCAAAATTCGTTGCCAAGCCCGCCATCC
GAGTGGTTGGCTGGCATCGAATTGCACTACCACGAATGGATGCAGCAGCC
CCACAGCTTCCAAACCTTTTCAAACTGAGAACAGTCGAAAAAGTATATGT
CAAACGTGATGCTTCGGGCGTGCCAATACTGCACATGAAAGAGGTACATA
GAAGATCAATACCTCTATGGCTCCTTGTAATAATTGCTGCAGCTGTAACT
TGGGTTCTTCGTCGTTTCATGATGCTGAAACATTTATCGCGAAAATATGT
ACGACAAGACCTCAAGAACGAAATAGCAGACTTTTATGATAAACGATCTG
CGGCATGGGAAACGGTCTGGGGCGAGCACATGCATCATGGACTGTACGAT
ATAGTTAATCGAAAGAAAATGAAAGGGCAACTTGCCCAAATAAGAACAAT
GTCCGAACTGTTGAAATTCGGCGGTGCTATGGACTTGAGTCTTTCTCCCA
ATTCTAGGATACTCGATTTGGGATGCGGCATTGGAGGGGCTTCGCGTTTT
CTGGCTCGGCATTTTGGGGAAGACTGTCACGTCACTGGTATTACGCTCAG
TTCCTACCAAGCCAACCGGGCAAATGAACTGAACGAGAAAAAGGGGCTCG
AGACAAGAGTGAAAAACGAGGTGAAAGATGCCTTAAACAGTGGCTTTCCA
GACGAAAGCTTTGAGATAGTATGGAGTCTAGAGAGCGGGGAGCACATCGA
AAATAAGCAGCTTCTCATGAATGAATGCGCTCGAATGCTCAAGCCTGGCG
GTCGGCTTCTTATGCTAGTGTGGTGTCTGAGAGAGTCTACTCCATCTTTT
ACTCTCACAGAACGCTATTCGATTCGTCGAATAATGGAAGAGTACGTCCT
ACCAACTTTGAGCCCGCCGAGCGAATATGCGACGGAGATGGTTCGTGCAG
GTTTCCGGGATGTCAAGTCTGAGGATTGGACAAAAAGAGGAGCGCCATTT
TGGGGAGAAGTAGTGTGGAGTACATTCTTTAATCCGCTTGGATGGAAGAT
GTTACTAAAGTATGGATGGCCACTAATACGATCGGCATTAGCCATGCGAC
ACGTGATGTCAGGTATTAAACAGGGCACTTTCCGTCTGGTTGCCTTCTCC
GCCACAAAGGCGAGTGTGGAAGATATCGAAAAAGAGAAAGCTGTGGTTGG
CACGTTGGGATGTCGCGATGAAAACGATTTACCGTAG

protein sequence of Gchil3406.t1

>Gchil3406.t1 ID=Gchil3406.t1|Name=Gchil3406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=429bp
MICFVSSSGAFTSRQLVPKILTKSPKFVAKPAIRVVGWHRIALPRMDAAA
PQLPNLFKLRTVEKVYVKRDASGVPILHMKEVHRRSIPLWLLVIIAAAVT
WVLRRFMMLKHLSRKYVRQDLKNEIADFYDKRSAAWETVWGEHMHHGLYD
IVNRKKMKGQLAQIRTMSELLKFGGAMDLSLSPNSRILDLGCGIGGASRF
LARHFGEDCHVTGITLSSYQANRANELNEKKGLETRVKNEVKDALNSGFP
DESFEIVWSLESGEHIENKQLLMNECARMLKPGGRLLMLVWCLRESTPSF
TLTERYSIRRIMEEYVLPTLSPPSEYATEMVRAGFRDVKSEDWTKRGAPF
WGEVVWSTFFNPLGWKMLLKYGWPLIRSALAMRHVMSGIKQGTFRLVAFS
ATKASVEDIEKEKAVVGTLGCRDENDLP*

mRNA from alignment at tig00000168_pilon:1004433..1005719+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3406.t1 ID=Gchil3406.t1|Name=Gchil3406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000168_pilon:1004433..1005719+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTGCTTTGTTTCTTCGTCCGGAGCATTCACTTCTCGGCAGCTCGT
TCCAAAGATATTGACTAAATCACCAAAATTCGTTGCCAAGCCCGCCATCC
GAGTGGTTGGCTGGCATCGAATTGCACTACCACGAATGGATGCAGCAGCC
CCACAGCTTCCAAACCTTTTCAAACTGAGAACAGTCGAAAAAGTATATGT
CAAACGTGATGCTTCGGGCGTGCCAATACTGCACATGAAAGAGGTACATA
GAAGATCAATACCTCTATGGCTCCTTGTAATAATTGCTGCAGCTGTAACT
TGGGTTCTTCGTCGTTTCATGATGCTGAAACATTTATCGCGAAAATATGT
ACGACAAGACCTCAAGAACGAAATAGCAGACTTTTATGATAAACGATCTG
CGGCATGGGAAACGGTCTGGGGCGAGCACATGCATCATGGACTGTACGAT
ATAGTTAATCGAAAGAAAATGAAAGGGCAACTTGCCCAAATAAGAACAAT
GTCCGAACTGTTGAAATTCGGCGGTGCTATGGACTTGAGTCTTTCTCCCA
ATTCTAGGATACTCGATTTGGGATGCGGCATTGGAGGGGCTTCGCGTTTT
CTGGCTCGGCATTTTGGGGAAGACTGTCACGTCACTGGTATTACGCTCAG
TTCCTACCAAGCCAACCGGGCAAATGAACTGAACGAGAAAAAGGGGCTCG
AGACAAGAGTGAAAAACGAGGTGAAAGATGCCTTAAACAGTGGCTTTCCA
GACGAAAGCTTTGAGATAGTATGGAGTCTAGAGAGCGGGGAGCACATCGA
AAATAAGCAGCTTCTCATGAATGAATGCGCTCGAATGCTCAAGCCTGGCG
GTCGGCTTCTTATGCTAGTGTGGTGTCTGAGAGAGTCTACTCCATCTTTT
ACTCTCACAGAACGCTATTCGATTCGTCGAATAATGGAAGAGTACGTCCT
ACCAACTTTGAGCCCGCCGAGCGAATATGCGACGGAGATGGTTCGTGCAG
GTTTCCGGGATGTCAAGTCTGAGGATTGGACAAAAAGAGGAGCGCCATTT
TGGGGAGAAGTAGTGTGGAGTACATTCTTTAATCCGCTTGGATGGAAGAT
GTTACTAAAGTATGGATGGCCACTAATACGATCGGCATTAGCCATGCGAC
ACGTGATGTCAGGTATTAAACAGGGCACTTTCCGTCTGGTTGCCTTCTCC
GCCACAAAGGCGAGTGTGGAAGATATCGAAAAAGAGAAAGCTGTGGTTGG
CACGTTGGGATGTCGCGATGAAAACGATTTACCGTAG

Coding sequence (CDS) from alignment at tig00000168_pilon:1004433..1005719+

>Gchil3406.t1 ID=Gchil3406.t1|Name=Gchil3406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000168_pilon:1004433..1005719+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTGCTTTGTTTCTTCGTCCGGAGCATTCACTTCTCGGCAGCTCGT
TCCAAAGATATTGACTAAATCACCAAAATTCGTTGCCAAGCCCGCCATCC
GAGTGGTTGGCTGGCATCGAATTGCACTACCACGAATGGATGCAGCAGCC
CCACAGCTTCCAAACCTTTTCAAACTGAGAACAGTCGAAAAAGTATATGT
CAAACGTGATGCTTCGGGCGTGCCAATACTGCACATGAAAGAGGTACATA
GAAGATCAATACCTCTATGGCTCCTTGTAATAATTGCTGCAGCTGTAACT
TGGGTTCTTCGTCGTTTCATGATGCTGAAACATTTATCGCGAAAATATGT
ACGACAAGACCTCAAGAACGAAATAGCAGACTTTTATGATAAACGATCTG
CGGCATGGGAAACGGTCTGGGGCGAGCACATGCATCATGGACTGTACGAT
ATAGTTAATCGAAAGAAAATGAAAGGGCAACTTGCCCAAATAAGAACAAT
GTCCGAACTGTTGAAATTCGGCGGTGCTATGGACTTGAGTCTTTCTCCCA
ATTCTAGGATACTCGATTTGGGATGCGGCATTGGAGGGGCTTCGCGTTTT
CTGGCTCGGCATTTTGGGGAAGACTGTCACGTCACTGGTATTACGCTCAG
TTCCTACCAAGCCAACCGGGCAAATGAACTGAACGAGAAAAAGGGGCTCG
AGACAAGAGTGAAAAACGAGGTGAAAGATGCCTTAAACAGTGGCTTTCCA
GACGAAAGCTTTGAGATAGTATGGAGTCTAGAGAGCGGGGAGCACATCGA
AAATAAGCAGCTTCTCATGAATGAATGCGCTCGAATGCTCAAGCCTGGCG
GTCGGCTTCTTATGCTAGTGTGGTGTCTGAGAGAGTCTACTCCATCTTTT
ACTCTCACAGAACGCTATTCGATTCGTCGAATAATGGAAGAGTACGTCCT
ACCAACTTTGAGCCCGCCGAGCGAATATGCGACGGAGATGGTTCGTGCAG
GTTTCCGGGATGTCAAGTCTGAGGATTGGACAAAAAGAGGAGCGCCATTT
TGGGGAGAAGTAGTGTGGAGTACATTCTTTAATCCGCTTGGATGGAAGAT
GTTACTAAAGTATGGATGGCCACTAATACGATCGGCATTAGCCATGCGAC
ACGTGATGTCAGGTATTAAACAGGGCACTTTCCGTCTGGTTGCCTTCTCC
GCCACAAAGGCGAGTGTGGAAGATATCGAAAAAGAGAAAGCTGTGGTTGG
CACGTTGGGATGTCGCGATGAAAACGATTTACCGTAG