Gchil3402.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3402.t1
Unique NameGchil3402.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:909083..909533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000020950
PFAMsPrefoldin_2
Max annot lvl121069|Pythiales
Evalue2.11e-12
EggNOG OGsKOG4098@1|root,KOG4098@2759|Eukaryota,1MHJZ@121069|Pythiales
DescriptionPrefoldin subunit 2. Source PGD
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3402Gchil3402Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 909083..909533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3402.t1Gchil3402.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 909083..909533 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3402.t1.start1Gchil3402.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 909083..909085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3402.t1.CDS1Gchil3402.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 909083..909331 +
Gchil3402.t1.CDS2Gchil3402.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 909417..909533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3402.t1.exon1Gchil3402.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 909083..909331 +
Gchil3402.t1.exon2Gchil3402.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 909417..909533 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3402.t1.intron1Gchil3402.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 909332..909416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3402.t1.stop1Gchil3402.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 909531..909533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3402.t1 ID=Gchil3402.t1|Name=Gchil3402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=122bp
MSTAEPPQRANQVLNQYQQLREQIDRNYAKLAQLNSDRNEHDLVISQLQK
LPPSTRCWHQVGAVLAEKRVSLVVPVLILTRDKLADTVRQLSHSISELEQ
NAQHLQKNISVPNASPLAPLP*
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spliced messenger RNA

>Gchil3402.t1 ID=Gchil3402.t1|Name=Gchil3402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000168_pilon:909083..909533+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgagcaccgccgagccgccgcagcgcGCCAACCAAGTGCTTAACCAGTA
CCAGCAACTGCGCGAGCAAATCGACCGCAACTACGCCAAGTTGGCGCAGC
TCAACTCCGATCGCAACGAGCATGACCTCGTCATCTCGCAGCTGCAAAAG
CTCCCCCCCTCCACGCGCTGCTGGCACCAGGTCGGTGCCGTCCTAGCCGA
GAAGCGCGTCTCTCTCGTCGTCCCGGTCCTCATTCTCACCAGAGACAAGC
TTGCCGACACCGTTCGACAGCTCTCTCACAGTATTTCCGAGCTCGAGCAA
AACGCTCAGCACCTGCAGAAAAACATTTCTGTGCCGAACGCCTCGCCGCT
GGCCCCACTTCCCTGA
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protein sequence of Gchil3402.t1

>Gchil3402.t1 ID=Gchil3402.t1|Name=Gchil3402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=122bp
MSTAEPPQRANQVLNQYQQLREQIDRNYAKLAQLNSDRNEHDLVISQLQK
LPPSTRCWHQVGAVLAEKRVSLVVPVLILTRDKLADTVRQLSHSISELEQ
NAQHLQKNISVPNASPLAPLP*
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mRNA from alignment at tig00000168_pilon:909083..909533+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3402.t1 ID=Gchil3402.t1|Name=Gchil3402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=451bp|location=Sequence derived from alignment at tig00000168_pilon:909083..909533+ (Gracilaria chilensis NLEC103_M9 male)
atgagcaccgccgagccgccgcagcgcGCCAACCAAGTGCTTAACCAGTA
CCAGCAACTGCGCGAGCAAATCGACCGCAACTACGCCAAGTTGGCGCAGC
TCAACTCCGATCGCAACGAGCATGACCTCGTCATCTCGCAGCTGCAAAAG
CTCCCCCCCTCCACGCGCTGCTGGCACCAGGTCGGTGCCGTCCTAGCCGA
GAAGCGCGTCTCTCTCGTCGTCCCGGTCCTCATTCTCACCAGAGACAAGG
TTTGTTTCCGCATCCCTGCCCCTGCTTTTACCCCTGCGTCATTCTTCTCA
CGCCCCCTGTTTCCCCCTTCCCATTCCCGTTTAGCTTGCCGACACCGTTC
GACAGCTCTCTCACAGTATTTCCGAGCTCGAGCAAAACGCTCAGCACCTG
CAGAAAAACATTTCTGTGCCGAACGCCTCGCCGCTGGCCCCACTTCCCTG
A
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Coding sequence (CDS) from alignment at tig00000168_pilon:909083..909533+

>Gchil3402.t1 ID=Gchil3402.t1|Name=Gchil3402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=366bp|location=Sequence derived from alignment at tig00000168_pilon:909083..909533+ (Gracilaria chilensis NLEC103_M9 male)
atgagcaccgccgagccgccgcagcgcGCCAACCAAGTGCTTAACCAGTA
CCAGCAACTGCGCGAGCAAATCGACCGCAACTACGCCAAGTTGGCGCAGC
TCAACTCCGATCGCAACGAGCATGACCTCGTCATCTCGCAGCTGCAAAAG
CTCCCCCCCTCCACGCGCTGCTGGCACCAGGTCGGTGCCGTCCTAGCCGA
GAAGCGCGTCTCTCTCGTCGTCCCGGTCCTCATTCTCACCAGAGACAAGC
TTGCCGACACCGTTCGACAGCTCTCTCACAGTATTTCCGAGCTCGAGCAA
AACGCTCAGCACCTGCAGAAAAACATTTCTGTGCCGAACGCCTCGCCGCT
GGCCCCACTTCCCTGA
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