Gchil3398.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3398.t1
Unique Name	Gchil3398.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:902159..903943 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009759287.1
PFAMs	Anticodon_1,tRNA-synt_1g
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01874
KEGG Reaction	R03659,R04773
KEGG Pathway	ko00450,ko00970,map00450,map00970
KEGG Module	M00359,M00360
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0035670,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0090567,GO:0099402,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue	2.49e-201
EggNOG OGs	COG0143@1\|root,KOG0436@2759\|Eukaryota,37PE4@33090\|Viridiplantae,3GFZ4@35493\|Streptophyta,44G8F@71274\|asterids
EC	6.1.1.10
Description	Belongs to the class-I aminoacyl-tRNA synthetase family
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3398	Gchil3398	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 902159..903943 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3398.t1.start1	Gchil3398.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 902159..902161 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3398.t1.CDS1	Gchil3398.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 902159..903943 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3398.t1.exon1	Gchil3398.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 902159..903943 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3398.t1.stop1	Gchil3398.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 903941..903943 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3398.t1	Gchil3398.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 902159..903943 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:902159..903943+
coding sequence from alignment at tig00000168_pilon:902159..903943+

mRNA sequence

>Gchil3398.t1 ID=Gchil3398.t1|Name=Gchil3398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=595bp
MERAVAFAPPQPLGSALRRALVRVCVPSRTAATSTRRRALACVKPPELRG
TRPVLTTPLFYVNAAPHLGSAYPTLAADALARFYRMAHASPTFVTGTDEH
GEKIAAAAAAAAAAAVTAAPDAHADAVSPLPFCDHVVYQFKQLWRRLDIS
YDAFVRTSSPHHQLVVRQFMERVWQNGDIYKSHYQGLYCTGCEEYKDKKD
LLPTNVCPTHQTICTNRDEQNYFFALSNYQTRLETFLNDNPSFVQPEERR
NEVLAWVKSGLRDFSVSRANNPWGIPVPRDPTQTIYVWFDALIGYLSALL
QHTDTPSLHQLAERGWPANVHIIGKDILRFHAVYWPAMLMSAGLPLPRTI
VGHGFITKDGMKMGKSLGNTLDPITLVETYGSDAVRYYFLATLDFGRDGD
FSHLRFVDVVNADLANSFGNLLNRSLNLLKRNCSGTIPVCSSLLGTSDAD
EHEVALRRAAEHAYTEAYAQYEALNFNAACQTLMSISSLANSYIDRVAPW
TKFKSQHARDVEMANRCVVNVLEASRIIAVGLSPIVPKLARKVYDAFGLA
HEYDSGLTWEQMRWGRLTEGMSFAKPKPVFPRLELAVAQAAAVS*

spliced messenger RNA

>Gchil3398.t1 ID=Gchil3398.t1|Name=Gchil3398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00000168_pilon:902159..903943+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGCGGTCGCGTTCGCGCCGCCACAGCCGTTGGGCAGCGCGCT
GCGGCGCGCGTTGGTGCGCGTCTGTGTGCCGAGTCGCACCGCCGCCACTT
CTACGCGACGGCGCGCCTTGGCGTGTGTGAAGCCACCCGAGCTGCGTGGT
ACACGTCCTGTGCTTACTACGCCGCTGTTTTACGTCAATGCTGCCCCGCA
CTTGGGCTCCGCCTACCCCACCCTCGCCGCCGATGCCCTTGCCCGCTTTT
ATCGCATGGCGCACGCCAGCCCTACCTTTGTTACCGGAACCGACGAACAT
GGCGAGAAGATCgctgctgctgctgcggcggcggcggcggcggctgtcac
tgctgcGCCCGATGCCCATGCCGATGCCGTTTCTCCGCTTCCGTTTTGCG
ACCACGTCGTCTACCAGTTCAAGCAGCTATGGCGCCGCTTGGATATCTCC
TATGACGCCTTTGTGCGTACCTCCTCGCCGCACCACCAACTCGTCGTACG
TCAGTTCATGGAACGAGTCTGGCAAAACGGTGACATCTACAAAAGTCACT
ACCAAGGGTTGTATTGCACCGGCTGTGAGGAATACAAGGACAAGAAAGAT
TTGTTGCCCACAAACGTTTGTCCAACCCATCAAACCATTTGTACCAATCG
TGACGAGCAAAACTACTTCTTTGCGCTCTCAAACTACCAAACTCGTCTGG
AAACCTTCCTCAACGACAACCCCTCCTTTGTGCAGCCCGAGGAGCGTAGG
AATGAGGTTTTGGCCTGGGTCAAGTCGGGACTGCGCGACTTCAGCGTGTC
GAGAGCCAACAACCCTTGGGGAATCCCCGTCCCTCGCGACCCCACCCAAA
CCATCTACGTCTGGTTTGATGCCCTCATCGGATATCTCAGCGCCCTATTA
CAACACACCGACACACCCTCACTGCACCAACTTGCAGAGCGCGGATGGCC
CGCCAATGTCCACATCATTGGAAAGGATATTTTGCGTTTCCACGCCGTGT
ACTGGCCTGCCATGCTCATGTCAGCTGGCTTGCCGCTACCGCGAACAATT
GTTGGTCACGGCTTCATCACCAAGGACGGCATGAAAATGGGAAAAAGTCT
GGGAAACACCCTTGACCCCATCACCCTCGTCGAAACGTACGGAAGCGACG
CTGTGCGCTACTACTTTTTGGCCACCCTCGATTTTGGTCGCGACGGAGAC
TTTTCACATCTTCGTTTTGTCGATGTTGTCAATGCTGATTTGGCTAATTC
CTTTGGCAACTTGCTCAATAGATCGCTCAACTTGCTCAAGCGCAACTGCT
CCGGTACCATTCCTGTGTGCTCCTCGCTGCTTGGAACGTCCGATGCTGAT
GAGCACGAAGTCGCTCTACGTCGAGCAGCGGAGCACGCTTATACAGAGGC
TTATGCCCAGTATGAAGCTCTCAATTTTAATGCCGCCTGCCAAACACTCA
TGTCTATTTCGTCGCTAGCCAATTCTTACATTGATCGAGTCGCCCCGTGG
ACAAAGTTCAAATCGCAACATGCACGCGACGTTGAAATGGCGAACAGATG
TGTTGTCAATGTGTTGGAAGCATCTAGGATTATTGCAGTCGGCCTCAGCC
CAATTGTGCCAAAACTTGCAAGGAAAGTTTATGACGCTTTTGGCCTAGCT
CATGAATATGACTCGGGATTAACGTGGGAGCAAATGAGATGGGGAAGACT
CACGGAGGGAATGTCGTTCGCAAAACCAAAACCAGTGTTCCCAAGACTTG
AACTTGCTGTAGCTCAAGCCGCAGCCGTCTCCTAG

protein sequence of Gchil3398.t1

>Gchil3398.t1 ID=Gchil3398.t1|Name=Gchil3398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=595bp
MERAVAFAPPQPLGSALRRALVRVCVPSRTAATSTRRRALACVKPPELRG
TRPVLTTPLFYVNAAPHLGSAYPTLAADALARFYRMAHASPTFVTGTDEH
GEKIAAAAAAAAAAAVTAAPDAHADAVSPLPFCDHVVYQFKQLWRRLDIS
YDAFVRTSSPHHQLVVRQFMERVWQNGDIYKSHYQGLYCTGCEEYKDKKD
LLPTNVCPTHQTICTNRDEQNYFFALSNYQTRLETFLNDNPSFVQPEERR
NEVLAWVKSGLRDFSVSRANNPWGIPVPRDPTQTIYVWFDALIGYLSALL
QHTDTPSLHQLAERGWPANVHIIGKDILRFHAVYWPAMLMSAGLPLPRTI
VGHGFITKDGMKMGKSLGNTLDPITLVETYGSDAVRYYFLATLDFGRDGD
FSHLRFVDVVNADLANSFGNLLNRSLNLLKRNCSGTIPVCSSLLGTSDAD
EHEVALRRAAEHAYTEAYAQYEALNFNAACQTLMSISSLANSYIDRVAPW
TKFKSQHARDVEMANRCVVNVLEASRIIAVGLSPIVPKLARKVYDAFGLA
HEYDSGLTWEQMRWGRLTEGMSFAKPKPVFPRLELAVAQAAAVS*

mRNA from alignment at tig00000168_pilon:902159..903943+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3398.t1 ID=Gchil3398.t1|Name=Gchil3398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00000168_pilon:902159..903943+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCGCGCGGTCGCGTTCGCGCCGCCACAGCCGTTGGGCAGCGCGCT
GCGGCGCGCGTTGGTGCGCGTCTGTGTGCCGAGTCGCACCGCCGCCACTT
CTACGCGACGGCGCGCCTTGGCGTGTGTGAAGCCACCCGAGCTGCGTGGT
ACACGTCCTGTGCTTACTACGCCGCTGTTTTACGTCAATGCTGCCCCGCA
CTTGGGCTCCGCCTACCCCACCCTCGCCGCCGATGCCCTTGCCCGCTTTT
ATCGCATGGCGCACGCCAGCCCTACCTTTGTTACCGGAACCGACGAACAT
GGCGAGAAGATCgctgctgctgctgcggcggcggcggcggcggctgtcac
tgctgcGCCCGATGCCCATGCCGATGCCGTTTCTCCGCTTCCGTTTTGCG
ACCACGTCGTCTACCAGTTCAAGCAGCTATGGCGCCGCTTGGATATCTCC
TATGACGCCTTTGTGCGTACCTCCTCGCCGCACCACCAACTCGTCGTACG
TCAGTTCATGGAACGAGTCTGGCAAAACGGTGACATCTACAAAAGTCACT
ACCAAGGGTTGTATTGCACCGGCTGTGAGGAATACAAGGACAAGAAAGAT
TTGTTGCCCACAAACGTTTGTCCAACCCATCAAACCATTTGTACCAATCG
TGACGAGCAAAACTACTTCTTTGCGCTCTCAAACTACCAAACTCGTCTGG
AAACCTTCCTCAACGACAACCCCTCCTTTGTGCAGCCCGAGGAGCGTAGG
AATGAGGTTTTGGCCTGGGTCAAGTCGGGACTGCGCGACTTCAGCGTGTC
GAGAGCCAACAACCCTTGGGGAATCCCCGTCCCTCGCGACCCCACCCAAA
CCATCTACGTCTGGTTTGATGCCCTCATCGGATATCTCAGCGCCCTATTA
CAACACACCGACACACCCTCACTGCACCAACTTGCAGAGCGCGGATGGCC
CGCCAATGTCCACATCATTGGAAAGGATATTTTGCGTTTCCACGCCGTGT
ACTGGCCTGCCATGCTCATGTCAGCTGGCTTGCCGCTACCGCGAACAATT
GTTGGTCACGGCTTCATCACCAAGGACGGCATGAAAATGGGAAAAAGTCT
GGGAAACACCCTTGACCCCATCACCCTCGTCGAAACGTACGGAAGCGACG
CTGTGCGCTACTACTTTTTGGCCACCCTCGATTTTGGTCGCGACGGAGAC
TTTTCACATCTTCGTTTTGTCGATGTTGTCAATGCTGATTTGGCTAATTC
CTTTGGCAACTTGCTCAATAGATCGCTCAACTTGCTCAAGCGCAACTGCT
CCGGTACCATTCCTGTGTGCTCCTCGCTGCTTGGAACGTCCGATGCTGAT
GAGCACGAAGTCGCTCTACGTCGAGCAGCGGAGCACGCTTATACAGAGGC
TTATGCCCAGTATGAAGCTCTCAATTTTAATGCCGCCTGCCAAACACTCA
TGTCTATTTCGTCGCTAGCCAATTCTTACATTGATCGAGTCGCCCCGTGG
ACAAAGTTCAAATCGCAACATGCACGCGACGTTGAAATGGCGAACAGATG
TGTTGTCAATGTGTTGGAAGCATCTAGGATTATTGCAGTCGGCCTCAGCC
CAATTGTGCCAAAACTTGCAAGGAAAGTTTATGACGCTTTTGGCCTAGCT
CATGAATATGACTCGGGATTAACGTGGGAGCAAATGAGATGGGGAAGACT
CACGGAGGGAATGTCGTTCGCAAAACCAAAACCAGTGTTCCCAAGACTTG
AACTTGCTGTAGCTCAAGCCGCAGCCGTCTCCTAG

Coding sequence (CDS) from alignment at tig00000168_pilon:902159..903943+

>Gchil3398.t1 ID=Gchil3398.t1|Name=Gchil3398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1785bp|location=Sequence derived from alignment at tig00000168_pilon:902159..903943+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCGCGCGGTCGCGTTCGCGCCGCCACAGCCGTTGGGCAGCGCGCT
GCGGCGCGCGTTGGTGCGCGTCTGTGTGCCGAGTCGCACCGCCGCCACTT
CTACGCGACGGCGCGCCTTGGCGTGTGTGAAGCCACCCGAGCTGCGTGGT
ACACGTCCTGTGCTTACTACGCCGCTGTTTTACGTCAATGCTGCCCCGCA
CTTGGGCTCCGCCTACCCCACCCTCGCCGCCGATGCCCTTGCCCGCTTTT
ATCGCATGGCGCACGCCAGCCCTACCTTTGTTACCGGAACCGACGAACAT
GGCGAGAAGATCgctgctgctgctgcggcggcggcggcggcggctgtcac
tgctgcGCCCGATGCCCATGCCGATGCCGTTTCTCCGCTTCCGTTTTGCG
ACCACGTCGTCTACCAGTTCAAGCAGCTATGGCGCCGCTTGGATATCTCC
TATGACGCCTTTGTGCGTACCTCCTCGCCGCACCACCAACTCGTCGTACG
TCAGTTCATGGAACGAGTCTGGCAAAACGGTGACATCTACAAAAGTCACT
ACCAAGGGTTGTATTGCACCGGCTGTGAGGAATACAAGGACAAGAAAGAT
TTGTTGCCCACAAACGTTTGTCCAACCCATCAAACCATTTGTACCAATCG
TGACGAGCAAAACTACTTCTTTGCGCTCTCAAACTACCAAACTCGTCTGG
AAACCTTCCTCAACGACAACCCCTCCTTTGTGCAGCCCGAGGAGCGTAGG
AATGAGGTTTTGGCCTGGGTCAAGTCGGGACTGCGCGACTTCAGCGTGTC
GAGAGCCAACAACCCTTGGGGAATCCCCGTCCCTCGCGACCCCACCCAAA
CCATCTACGTCTGGTTTGATGCCCTCATCGGATATCTCAGCGCCCTATTA
CAACACACCGACACACCCTCACTGCACCAACTTGCAGAGCGCGGATGGCC
CGCCAATGTCCACATCATTGGAAAGGATATTTTGCGTTTCCACGCCGTGT
ACTGGCCTGCCATGCTCATGTCAGCTGGCTTGCCGCTACCGCGAACAATT
GTTGGTCACGGCTTCATCACCAAGGACGGCATGAAAATGGGAAAAAGTCT
GGGAAACACCCTTGACCCCATCACCCTCGTCGAAACGTACGGAAGCGACG
CTGTGCGCTACTACTTTTTGGCCACCCTCGATTTTGGTCGCGACGGAGAC
TTTTCACATCTTCGTTTTGTCGATGTTGTCAATGCTGATTTGGCTAATTC
CTTTGGCAACTTGCTCAATAGATCGCTCAACTTGCTCAAGCGCAACTGCT
CCGGTACCATTCCTGTGTGCTCCTCGCTGCTTGGAACGTCCGATGCTGAT
GAGCACGAAGTCGCTCTACGTCGAGCAGCGGAGCACGCTTATACAGAGGC
TTATGCCCAGTATGAAGCTCTCAATTTTAATGCCGCCTGCCAAACACTCA
TGTCTATTTCGTCGCTAGCCAATTCTTACATTGATCGAGTCGCCCCGTGG
ACAAAGTTCAAATCGCAACATGCACGCGACGTTGAAATGGCGAACAGATG
TGTTGTCAATGTGTTGGAAGCATCTAGGATTATTGCAGTCGGCCTCAGCC
CAATTGTGCCAAAACTTGCAAGGAAAGTTTATGACGCTTTTGGCCTAGCT
CATGAATATGACTCGGGATTAACGTGGGAGCAAATGAGATGGGGAAGACT
CACGGAGGGAATGTCGTTCGCAAAACCAAAACCAGTGTTCCCAAGACTTG
AACTTGCTGTAGCTCAAGCCGCAGCCGTCTCCTAG