Gchil3397.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3397.t1
Unique NameGchil3397.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:899567..900487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3397Gchil3397Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 899567..900487 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3397.t1.stop1Gchil3397.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 899567..899569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3397.t1.CDS1Gchil3397.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 899567..900487 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3397.t1.exon1Gchil3397.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 899567..900487 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3397.t1.start1Gchil3397.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 900485..900487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3397.t1Gchil3397.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 899567..900487 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3397.t1 ID=Gchil3397.t1|Name=Gchil3397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=307bp
MSPSCRHHGHERSSPTLTSSDSFHVSSSHPPLCSAVTVNVRLSSSTKCLL
LNDLFVPVNSMHPLTQIFRTAMRRFPTEMARFTLRREKSVLVLCHHPRQN
TSMPVHALFSALHRTTVRRLIFCVTLNVNIIRELNSRANYSLSVNAQHEI
GGPYLLQHHITIQLAGFATGVTLWQHFIRHETMLRRHFVVALVSQPTIEH
VVVRFSTNDTIADIASCGPQRFSFIVSAAQPYHKPTSSSEELFHDHTHPN
QQEQHHAQHCHNPNRTEHRPHRVLSLPFWRHFFSNTVRADRLNNDGQQTH
AQSKKK*
back to top

spliced messenger RNA

>Gchil3397.t1 ID=Gchil3397.t1|Name=Gchil3397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000168_pilon:899567..900487- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCTTCTTGTCGCCACCATGGTCATGAGCGTAGCTCTCCCACGCT
TACGTCCTCTGATTCGTTTCACGTGTCGTCCAGTCACCCGCCGCTTTGTT
CTGCTGTTACTGTCAACGTACGTCTCAGCTCCTCCACAAAGTGCTTGCTG
CTCAATGATCTTTTTGTCCCTGTAAACTCCATGCACCCCCTTACTCAAAT
CTTTCGCACTGCCATGCGCAGATTCCCCACCGAAATGGCTCGATTCACAC
TACGTCGAGAAAAGTCTGTTCTCGTTTTGTGTCATCACCCACGCCAAAAC
ACCTCCATGCCCGTGCACGCCCTCTTTTCAGCCCTGCATCGCACCACCGT
TCGTCGCTTGATATTCTGCGTAACCCTCAATGTGAACATCATTCGCGAGT
TGAATTCCAGAGCAAATTATTCATTGTCTGTCAATGCACAACACGAAATT
GGTGGCCCGTATCTGCTTCAACACCACATCACAATACAATTGGCCGGCTT
CGCCACCGGCGTCACTCTGTGGCAGCACTTCATACGTCACGAAACTATGT
TGCGTCGCCATTTCGTCGTCGCTCTCGTTTCGCAACCCACGATTGAACAT
GTTGTTGTTCGGTTCAGTACCAACGATACCATAGCCGATATTGCCAGTTG
TGGTCCTCAGCGTTTTTCTTTCATAGTGTCTGCCGCACAGCCCTATCACA
AACCCACAAGCTCTTCGGAGGAGCTGTTCCACGACCATACCCACCCTAAC
CAACAAGAGCAACATCATGCACAACACTGTCACAACCCCAACCGTACCGA
ACATCGCCCACATCGAGTTCTCTCACTGCCGTTTTGGCGCCATTTCTTTT
CCAACACTGTTCGCGCCGATAGATTGAACAATGACGGCCAACAAACACAT
GCTCAATCAAAAAAGAAATAA
back to top

protein sequence of Gchil3397.t1

>Gchil3397.t1 ID=Gchil3397.t1|Name=Gchil3397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=307bp
MSPSCRHHGHERSSPTLTSSDSFHVSSSHPPLCSAVTVNVRLSSSTKCLL
LNDLFVPVNSMHPLTQIFRTAMRRFPTEMARFTLRREKSVLVLCHHPRQN
TSMPVHALFSALHRTTVRRLIFCVTLNVNIIRELNSRANYSLSVNAQHEI
GGPYLLQHHITIQLAGFATGVTLWQHFIRHETMLRRHFVVALVSQPTIEH
VVVRFSTNDTIADIASCGPQRFSFIVSAAQPYHKPTSSSEELFHDHTHPN
QQEQHHAQHCHNPNRTEHRPHRVLSLPFWRHFFSNTVRADRLNNDGQQTH
AQSKKK*
back to top

mRNA from alignment at tig00000168_pilon:899567..900487-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3397.t1 ID=Gchil3397.t1|Name=Gchil3397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000168_pilon:899567..900487- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCTTCTTGTCGCCACCATGGTCATGAGCGTAGCTCTCCCACGCT
TACGTCCTCTGATTCGTTTCACGTGTCGTCCAGTCACCCGCCGCTTTGTT
CTGCTGTTACTGTCAACGTACGTCTCAGCTCCTCCACAAAGTGCTTGCTG
CTCAATGATCTTTTTGTCCCTGTAAACTCCATGCACCCCCTTACTCAAAT
CTTTCGCACTGCCATGCGCAGATTCCCCACCGAAATGGCTCGATTCACAC
TACGTCGAGAAAAGTCTGTTCTCGTTTTGTGTCATCACCCACGCCAAAAC
ACCTCCATGCCCGTGCACGCCCTCTTTTCAGCCCTGCATCGCACCACCGT
TCGTCGCTTGATATTCTGCGTAACCCTCAATGTGAACATCATTCGCGAGT
TGAATTCCAGAGCAAATTATTCATTGTCTGTCAATGCACAACACGAAATT
GGTGGCCCGTATCTGCTTCAACACCACATCACAATACAATTGGCCGGCTT
CGCCACCGGCGTCACTCTGTGGCAGCACTTCATACGTCACGAAACTATGT
TGCGTCGCCATTTCGTCGTCGCTCTCGTTTCGCAACCCACGATTGAACAT
GTTGTTGTTCGGTTCAGTACCAACGATACCATAGCCGATATTGCCAGTTG
TGGTCCTCAGCGTTTTTCTTTCATAGTGTCTGCCGCACAGCCCTATCACA
AACCCACAAGCTCTTCGGAGGAGCTGTTCCACGACCATACCCACCCTAAC
CAACAAGAGCAACATCATGCACAACACTGTCACAACCCCAACCGTACCGA
ACATCGCCCACATCGAGTTCTCTCACTGCCGTTTTGGCGCCATTTCTTTT
CCAACACTGTTCGCGCCGATAGATTGAACAATGACGGCCAACAAACACAT
GCTCAATCAAAAAAGAAATAA
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:899567..900487-

>Gchil3397.t1 ID=Gchil3397.t1|Name=Gchil3397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000168_pilon:899567..900487- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCTTCTTGTCGCCACCATGGTCATGAGCGTAGCTCTCCCACGCT
TACGTCCTCTGATTCGTTTCACGTGTCGTCCAGTCACCCGCCGCTTTGTT
CTGCTGTTACTGTCAACGTACGTCTCAGCTCCTCCACAAAGTGCTTGCTG
CTCAATGATCTTTTTGTCCCTGTAAACTCCATGCACCCCCTTACTCAAAT
CTTTCGCACTGCCATGCGCAGATTCCCCACCGAAATGGCTCGATTCACAC
TACGTCGAGAAAAGTCTGTTCTCGTTTTGTGTCATCACCCACGCCAAAAC
ACCTCCATGCCCGTGCACGCCCTCTTTTCAGCCCTGCATCGCACCACCGT
TCGTCGCTTGATATTCTGCGTAACCCTCAATGTGAACATCATTCGCGAGT
TGAATTCCAGAGCAAATTATTCATTGTCTGTCAATGCACAACACGAAATT
GGTGGCCCGTATCTGCTTCAACACCACATCACAATACAATTGGCCGGCTT
CGCCACCGGCGTCACTCTGTGGCAGCACTTCATACGTCACGAAACTATGT
TGCGTCGCCATTTCGTCGTCGCTCTCGTTTCGCAACCCACGATTGAACAT
GTTGTTGTTCGGTTCAGTACCAACGATACCATAGCCGATATTGCCAGTTG
TGGTCCTCAGCGTTTTTCTTTCATAGTGTCTGCCGCACAGCCCTATCACA
AACCCACAAGCTCTTCGGAGGAGCTGTTCCACGACCATACCCACCCTAAC
CAACAAGAGCAACATCATGCACAACACTGTCACAACCCCAACCGTACCGA
ACATCGCCCACATCGAGTTCTCTCACTGCCGTTTTGGCGCCATTTCTTTT
CCAACACTGTTCGCGCCGATAGATTGAACAATGACGGCCAACAAACACAT
GCTCAATCAAAAAAGAAATAA
back to top