Gchil339.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil339.t1
Unique NameGchil339.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:335233..335904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil339Gchil339Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 335233..335904 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil339.t1.start1Gchil339.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 335233..335235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil339.t1.CDS1Gchil339.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 335233..335904 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil339.t1.exon1Gchil339.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 335233..335904 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil339.t1.stop1Gchil339.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 335902..335904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil339.t1Gchil339.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 335233..335904 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil339.t1 ID=Gchil339.t1|Name=Gchil339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=224bp
MSCCAEEFKKALGPLQSESTFAGLKIAFKGFRLQLKDITDRPRGFVAEIP
NKKDEEQVGPIAAIESSFKSRASLNLDDAASVLRSLSISTKASSSTLTKT
DLDSILNQKIQKALFSVTNKDPSHPKGGPVPSNGSNGNKPSKQKNKRKRN
STKNKDKQTIEEKGAQPQNCARDPNSFDCGSKTKYRGSSDCTEQSYETRR
RLAKKEKEGVFQSGSTVSKDNQA*
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spliced messenger RNA

>Gchil339.t1 ID=Gchil339.t1|Name=Gchil339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000212_pilon:335233..335904+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGCTGTGCCGAGGAATTCAAGAAGGCCCTTGGCCCTCTACAATC
CGAATCGACTTTTGCCGGGCTGAAAATAGCCTTCAAAGGTTTTCGACTCC
AATTGAAGGACATTACCGACAGGCCCCGTGGCTTTGTTGCTGAAATACCG
AACAAGAAAGATGAGGAACAGGTTGGTCCCATTGCAGCTATAGAGAGCTC
GTTCAAGTCGCGCGCTTCTCTGAACCTGGACGACGCCGCATCGGTCCTTC
GTTCTCTTTCTATTTCTACGAAAGCTTCTTCTTCCACCCTCACCAAAACG
GACCTTGATTCAATTCTTAATCAAAAAATCCAAAAGGCGCTCTTTTCAGT
TACCAACAAGGATCCCTCACACCCCAAAGGTGGTCCTGTCCCTTCAAATG
GGAGCAATGGTAACAAGCCGTCAAAGCAGAAGAACAAGAGAAAGAGAAAC
TCAACAAAGAATAAGGACAAGCAAACCATCGAAGAGAAAGGTGCACAACC
GCAAAATTGCGCTCGAGACCCCAACTCCTTCGATTGCGGTTCCAAGACTA
AATACCGGGGAAGTTCTGATTGCACCGAGCAGTCATATGAAACGAGGAGA
CGATTGGCGAaaaaggagaaagaaggggtttttcaatcaggctccacagt
ctcgaaagacaatcaagcctga
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protein sequence of Gchil339.t1

>Gchil339.t1 ID=Gchil339.t1|Name=Gchil339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=224bp
MSCCAEEFKKALGPLQSESTFAGLKIAFKGFRLQLKDITDRPRGFVAEIP
NKKDEEQVGPIAAIESSFKSRASLNLDDAASVLRSLSISTKASSSTLTKT
DLDSILNQKIQKALFSVTNKDPSHPKGGPVPSNGSNGNKPSKQKNKRKRN
STKNKDKQTIEEKGAQPQNCARDPNSFDCGSKTKYRGSSDCTEQSYETRR
RLAKKEKEGVFQSGSTVSKDNQA*
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mRNA from alignment at tig00000212_pilon:335233..335904+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil339.t1 ID=Gchil339.t1|Name=Gchil339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000212_pilon:335233..335904+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTGCTGTGCCGAGGAATTCAAGAAGGCCCTTGGCCCTCTACAATC
CGAATCGACTTTTGCCGGGCTGAAAATAGCCTTCAAAGGTTTTCGACTCC
AATTGAAGGACATTACCGACAGGCCCCGTGGCTTTGTTGCTGAAATACCG
AACAAGAAAGATGAGGAACAGGTTGGTCCCATTGCAGCTATAGAGAGCTC
GTTCAAGTCGCGCGCTTCTCTGAACCTGGACGACGCCGCATCGGTCCTTC
GTTCTCTTTCTATTTCTACGAAAGCTTCTTCTTCCACCCTCACCAAAACG
GACCTTGATTCAATTCTTAATCAAAAAATCCAAAAGGCGCTCTTTTCAGT
TACCAACAAGGATCCCTCACACCCCAAAGGTGGTCCTGTCCCTTCAAATG
GGAGCAATGGTAACAAGCCGTCAAAGCAGAAGAACAAGAGAAAGAGAAAC
TCAACAAAGAATAAGGACAAGCAAACCATCGAAGAGAAAGGTGCACAACC
GCAAAATTGCGCTCGAGACCCCAACTCCTTCGATTGCGGTTCCAAGACTA
AATACCGGGGAAGTTCTGATTGCACCGAGCAGTCATATGAAACGAGGAGA
CGATTGGCGAaaaaggagaaagaaggggtttttcaatcaggctccacagt
ctcgaaagacaatcaagcctga
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Coding sequence (CDS) from alignment at tig00000212_pilon:335233..335904+

>Gchil339.t1 ID=Gchil339.t1|Name=Gchil339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000212_pilon:335233..335904+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTGCTGTGCCGAGGAATTCAAGAAGGCCCTTGGCCCTCTACAATC
CGAATCGACTTTTGCCGGGCTGAAAATAGCCTTCAAAGGTTTTCGACTCC
AATTGAAGGACATTACCGACAGGCCCCGTGGCTTTGTTGCTGAAATACCG
AACAAGAAAGATGAGGAACAGGTTGGTCCCATTGCAGCTATAGAGAGCTC
GTTCAAGTCGCGCGCTTCTCTGAACCTGGACGACGCCGCATCGGTCCTTC
GTTCTCTTTCTATTTCTACGAAAGCTTCTTCTTCCACCCTCACCAAAACG
GACCTTGATTCAATTCTTAATCAAAAAATCCAAAAGGCGCTCTTTTCAGT
TACCAACAAGGATCCCTCACACCCCAAAGGTGGTCCTGTCCCTTCAAATG
GGAGCAATGGTAACAAGCCGTCAAAGCAGAAGAACAAGAGAAAGAGAAAC
TCAACAAAGAATAAGGACAAGCAAACCATCGAAGAGAAAGGTGCACAACC
GCAAAATTGCGCTCGAGACCCCAACTCCTTCGATTGCGGTTCCAAGACTA
AATACCGGGGAAGTTCTGATTGCACCGAGCAGTCATATGAAACGAGGAGA
CGATTGGCGAaaaaggagaaagaaggggtttttcaatcaggctccacagt
ctcgaaagacaatcaagcctga
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