Gchil3387.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3387.t1
Unique NameGchil3387.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:810661..811557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD16494
PFAMsAIG2_2
Max annot lvl2759|Eukaryota
Evalue6e-13
EggNOG OGs2DP66@1|root,2S68V@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3387Gchil3387Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 810661..811557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3387.t1Gchil3387.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 810661..811557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3387.t1.start1Gchil3387.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 810661..810663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3387.t1.CDS1Gchil3387.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 810661..810984 +
Gchil3387.t1.CDS2Gchil3387.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 811084..811557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3387.t1.exon1Gchil3387.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 810661..810984 +
Gchil3387.t1.exon2Gchil3387.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 811084..811557 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3387.t1.intron1Gchil3387.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 810985..811083 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3387.t1.stop1Gchil3387.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 811555..811557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3387.t1 ID=Gchil3387.t1|Name=Gchil3387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MMSTTSTTTPTRLYFGYASNMSRKKMQKRTAGAEFANVLVGRLEDWQLCM
NIVGNPPAEPAFGNIRPCIGDEVFGVVYNIKTESDWKKLMRSEGVGGHSK
KLVYQIVELETHVFPSARYMDIVLSGAKEERLPRSYINRLERIPVARTWN
GTLLQEMNIFTAVLSFFLTSKGMGRVLLPFRVSYIYSYALHEKFARRDGR
ALYERMMMLLSKIAMFCAYIFPNIGAFFLLLVRGQTRDTYRKIREVVNSQ
KISRSPVDAKDSKNS*
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spliced messenger RNA

>Gchil3387.t1 ID=Gchil3387.t1|Name=Gchil3387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000168_pilon:810661..811557+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCGACAACCTCAACCACCACACCCACTCGCTTGTACTTTGGATA
TGCCTCAAATATGTCTCGCAAGAAGATGCAAAAGCGAACAGCAGGGGCGG
AATTCGCCAATGTTTTGGTTGGGCGTCTTGAAGATTGGCAGCTTTGCATG
AATATTGTAGGCAATCCACCGGCAGAGCCTGCATTTGGGAATATCAGACC
CTGTATAGGAGATGAGGTTTTTGGAGTTGTCTACAACATCAAGACGGAAT
CAGATTGGAAGAAGCTGATGCGAAGTGAAGGCGTGGGAGGTCACTCGAAA
AAATTGGTGTACCAAATAGTCGAACTCGAGACTCATGTTTTCCCATCGGC
ACGATACATGGACATAGTATTATCAGGAGCGAAAGAAGAAAGACTTCCCC
GCAGTTACATTAATCGCCTTGAACGTATACCAGTGGCGAGGACATGGAAT
GGTACTCTTCTGCAAGAAATGAATATTTTTACCGCAGTCCTGTCTTTTTT
TCTTACAAGCAAGGGTATGGGTCGTGTGCTCTTACCATTCAGGGTTTCAT
ATATCTACTCATATGCTCTTCATGAGAAGTTTGCACGAAGAGATGGAAGA
GCGCTGTACGAACGGATGATGATGTTGTTGAGCAAAATTGCAATGTTCTG
TGCATATATCTTTCCCAATATTGGAGCATTCTTTTTGCTTCTTGTCAGGG
GACAAACCAGAGACACATATCGCAAAATACGGGAAGTAGTTAACTCTCAG
AAAATATCCCGGAGTCCCGTTGATGCGAAGGATTCGAAGAATTCGTGA
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protein sequence of Gchil3387.t1

>Gchil3387.t1 ID=Gchil3387.t1|Name=Gchil3387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MMSTTSTTTPTRLYFGYASNMSRKKMQKRTAGAEFANVLVGRLEDWQLCM
NIVGNPPAEPAFGNIRPCIGDEVFGVVYNIKTESDWKKLMRSEGVGGHSK
KLVYQIVELETHVFPSARYMDIVLSGAKEERLPRSYINRLERIPVARTWN
GTLLQEMNIFTAVLSFFLTSKGMGRVLLPFRVSYIYSYALHEKFARRDGR
ALYERMMMLLSKIAMFCAYIFPNIGAFFLLLVRGQTRDTYRKIREVVNSQ
KISRSPVDAKDSKNS*
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mRNA from alignment at tig00000168_pilon:810661..811557+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3387.t1 ID=Gchil3387.t1|Name=Gchil3387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000168_pilon:810661..811557+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCGACAACCTCAACCACCACACCCACTCGCTTGTACTTTGGATA
TGCCTCAAATATGTCTCGCAAGAAGATGCAAAAGCGAACAGCAGGGGCGG
AATTCGCCAATGTTTTGGTTGGGCGTCTTGAAGATTGGCAGCTTTGCATG
AATATTGTAGGCAATCCACCGGCAGAGCCTGCATTTGGGAATATCAGACC
CTGTATAGGAGATGAGGTTTTTGGAGTTGTCTACAACATCAAGACGGAAT
CAGATTGGAAGAAGCTGATGCGAAGTGAAGGCGTGGGAGGTCACTCGAAA
AAATTGGTGTACCAAATAGTCGAAGTAAGTGTTGAATGCTTTTCACCGGA
GACTCCCAGCGAAAGAACAGTGCGATCTGTTTTCACACTAATGTCCCCTC
CGGCTGTGACCTTTTCTCGACAGCTCGAGACTCATGTTTTCCCATCGGCA
CGATACATGGACATAGTATTATCAGGAGCGAAAGAAGAAAGACTTCCCCG
CAGTTACATTAATCGCCTTGAACGTATACCAGTGGCGAGGACATGGAATG
GTACTCTTCTGCAAGAAATGAATATTTTTACCGCAGTCCTGTCTTTTTTT
CTTACAAGCAAGGGTATGGGTCGTGTGCTCTTACCATTCAGGGTTTCATA
TATCTACTCATATGCTCTTCATGAGAAGTTTGCACGAAGAGATGGAAGAG
CGCTGTACGAACGGATGATGATGTTGTTGAGCAAAATTGCAATGTTCTGT
GCATATATCTTTCCCAATATTGGAGCATTCTTTTTGCTTCTTGTCAGGGG
ACAAACCAGAGACACATATCGCAAAATACGGGAAGTAGTTAACTCTCAGA
AAATATCCCGGAGTCCCGTTGATGCGAAGGATTCGAAGAATTCGTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:810661..811557+

>Gchil3387.t1 ID=Gchil3387.t1|Name=Gchil3387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000168_pilon:810661..811557+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCGACAACCTCAACCACCACACCCACTCGCTTGTACTTTGGATA
TGCCTCAAATATGTCTCGCAAGAAGATGCAAAAGCGAACAGCAGGGGCGG
AATTCGCCAATGTTTTGGTTGGGCGTCTTGAAGATTGGCAGCTTTGCATG
AATATTGTAGGCAATCCACCGGCAGAGCCTGCATTTGGGAATATCAGACC
CTGTATAGGAGATGAGGTTTTTGGAGTTGTCTACAACATCAAGACGGAAT
CAGATTGGAAGAAGCTGATGCGAAGTGAAGGCGTGGGAGGTCACTCGAAA
AAATTGGTGTACCAAATAGTCGAACTCGAGACTCATGTTTTCCCATCGGC
ACGATACATGGACATAGTATTATCAGGAGCGAAAGAAGAAAGACTTCCCC
GCAGTTACATTAATCGCCTTGAACGTATACCAGTGGCGAGGACATGGAAT
GGTACTCTTCTGCAAGAAATGAATATTTTTACCGCAGTCCTGTCTTTTTT
TCTTACAAGCAAGGGTATGGGTCGTGTGCTCTTACCATTCAGGGTTTCAT
ATATCTACTCATATGCTCTTCATGAGAAGTTTGCACGAAGAGATGGAAGA
GCGCTGTACGAACGGATGATGATGTTGTTGAGCAAAATTGCAATGTTCTG
TGCATATATCTTTCCCAATATTGGAGCATTCTTTTTGCTTCTTGTCAGGG
GACAAACCAGAGACACATATCGCAAAATACGGGAAGTAGTTAACTCTCAG
AAAATATCCCGGAGTCCCGTTGATGCGAAGGATTCGAAGAATTCGTGA
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