Gchil3385.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3385.t1
Unique NameGchil3385.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:710753..711784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT467CT
Preferred nameSLC35C1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15279
KEGG TC2.A.7.16
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005342,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015075,GO:0015318,GO:0015605,GO:0015711,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015780,GO:0015783,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0034220,GO:0035436,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0046942,GO:0046943,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071917,GO:0089721,GO:0089722,GO:0090480,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903825,GO:1905039,GO:1990536
Evalue9.93e-123
EggNOG OGsKOG1442@1|root,KOG1442@2759|Eukaryota
DescriptionGDP-fucose import into Golgi lumen
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3385Gchil3385Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 710753..711784 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3385.t1.stop1Gchil3385.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 710753..710755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3385.t1.CDS1Gchil3385.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 710753..711784 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3385.t1.exon1Gchil3385.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 710753..711784 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3385.t1.start1Gchil3385.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 711782..711784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3385.t1Gchil3385.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 710753..711784 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3385.t1 ID=Gchil3385.t1|Name=Gchil3385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=344bp
MSADNPSSQPLTRQMTNIAMAVSFYWVISISMVFANKTLLGGQDRSSAPF
FITWSQCVVTVLFCYLAGKFRVANVPPFEVRNDILKQMLSLSFIFTSMIV
FNNLCLKYVEVSFYQVARSLTIVFNVIFDYVVLGQVTSFKAMVCCAFVVS
GFALGNVEEMRWSLLGVLFGVTSSFFVAMNSIFVKKKFVLVDNNPWKITL
YNNLNASFLFLPLIFGSGEISYILTSPEVRTLHYWVLLFGSGLLGVSISF
ASAAQIKYTSPLTHNVSATAKAAAQTIIALLVYRNPISPLGFLAVLLVLT
ASLGYTLVRRAEMKKKAQEQTASKLDSTKEPLTSSKEVRAEKA*
back to top

spliced messenger RNA

>Gchil3385.t1 ID=Gchil3385.t1|Name=Gchil3385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000168_pilon:710753..711784- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGGATAATCCGAGTTCGCAGCCGCTCACGCGGCAGATGACCAA
CATTGCCATGGCAGTGTCCTTCTACTGGGTCATCTCCATCTCCATGGTGT
TTGCTAACAAGACGCTGCTCGGCGGCCAGGATCGTTCCTCCGCCCCGTTC
TTTATCACGTGGTCTCAGTGCGTCGTCACTGTTCTGTTCTGCTATCTTGC
GGGCAAATTCCGCGTGGCTAATGTGCCGCCTTTTGAGGTGCGCAACGACA
TCTTGAAGCAGATGCTTTCCTTGTCTTTTATCTTCACTTCTATGATTGTG
TTCAATAATCTTTGTCTCAAGTATGTCGAGGTTTCATTCTATCAGGTTGC
CCGATCGCTCACCATTGTCTTCAATGTCATCTTTGACTACGTCGTCCTGG
GACAGGTCACTTCCTTCAAAGCTATGGTGTGCTGTGCCTTCGTCGTCTCT
GGTTTTGCTCTCGGAAACGTCGAGGAGATGCGTTGGTCTCTCTTGGGAGT
CTTGTTTGGTGTCACCTCCTCATTCTTCGTCGCCATGAACTCCATATTTG
TCAAGAAGAAGTTTGTCCTCGTTGACAACAACCCCTGGAAAATCACTCTG
TACAACAATTTGAATGCCTCTTTCCTTTTCCTGCCGCTCATTTTCGGCTC
TGGTGAAATCTCTTACATCCTCACCTCCCCAGAAGTGCGCACGCTGCACT
ACTGGGTGCTTCTTTTCGGTTCTGGTCTGCTGGGTGTCAGTATTTCGTTT
GCCTCCGCCGCTCAGATCAAGTATACTTCCCCTCTAACACACAATGTCTC
TGCCACCGCAAAGGCAGCTGCGCAGACAATTATTGCCCTTCTTGTGTATC
GAAATCCCATCTCACCTCTTGGTTTCCTCGCCGTGCTACTTGTGCTTACG
GCATCTTTGGGATACACGCTTGTAAGAAGAGCAGAAATGAAGAAGAAGGC
TCAAGAACAAACTGCGTCCAAACTTGATTCAACGAAGGAGCCTCTGACGT
CAAGTAAAGAAGTGCGCGCAGAGAAAGCATAG
back to top

protein sequence of Gchil3385.t1

>Gchil3385.t1 ID=Gchil3385.t1|Name=Gchil3385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=344bp
MSADNPSSQPLTRQMTNIAMAVSFYWVISISMVFANKTLLGGQDRSSAPF
FITWSQCVVTVLFCYLAGKFRVANVPPFEVRNDILKQMLSLSFIFTSMIV
FNNLCLKYVEVSFYQVARSLTIVFNVIFDYVVLGQVTSFKAMVCCAFVVS
GFALGNVEEMRWSLLGVLFGVTSSFFVAMNSIFVKKKFVLVDNNPWKITL
YNNLNASFLFLPLIFGSGEISYILTSPEVRTLHYWVLLFGSGLLGVSISF
ASAAQIKYTSPLTHNVSATAKAAAQTIIALLVYRNPISPLGFLAVLLVLT
ASLGYTLVRRAEMKKKAQEQTASKLDSTKEPLTSSKEVRAEKA*
back to top

mRNA from alignment at tig00000168_pilon:710753..711784-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3385.t1 ID=Gchil3385.t1|Name=Gchil3385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000168_pilon:710753..711784- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGGATAATCCGAGTTCGCAGCCGCTCACGCGGCAGATGACCAA
CATTGCCATGGCAGTGTCCTTCTACTGGGTCATCTCCATCTCCATGGTGT
TTGCTAACAAGACGCTGCTCGGCGGCCAGGATCGTTCCTCCGCCCCGTTC
TTTATCACGTGGTCTCAGTGCGTCGTCACTGTTCTGTTCTGCTATCTTGC
GGGCAAATTCCGCGTGGCTAATGTGCCGCCTTTTGAGGTGCGCAACGACA
TCTTGAAGCAGATGCTTTCCTTGTCTTTTATCTTCACTTCTATGATTGTG
TTCAATAATCTTTGTCTCAAGTATGTCGAGGTTTCATTCTATCAGGTTGC
CCGATCGCTCACCATTGTCTTCAATGTCATCTTTGACTACGTCGTCCTGG
GACAGGTCACTTCCTTCAAAGCTATGGTGTGCTGTGCCTTCGTCGTCTCT
GGTTTTGCTCTCGGAAACGTCGAGGAGATGCGTTGGTCTCTCTTGGGAGT
CTTGTTTGGTGTCACCTCCTCATTCTTCGTCGCCATGAACTCCATATTTG
TCAAGAAGAAGTTTGTCCTCGTTGACAACAACCCCTGGAAAATCACTCTG
TACAACAATTTGAATGCCTCTTTCCTTTTCCTGCCGCTCATTTTCGGCTC
TGGTGAAATCTCTTACATCCTCACCTCCCCAGAAGTGCGCACGCTGCACT
ACTGGGTGCTTCTTTTCGGTTCTGGTCTGCTGGGTGTCAGTATTTCGTTT
GCCTCCGCCGCTCAGATCAAGTATACTTCCCCTCTAACACACAATGTCTC
TGCCACCGCAAAGGCAGCTGCGCAGACAATTATTGCCCTTCTTGTGTATC
GAAATCCCATCTCACCTCTTGGTTTCCTCGCCGTGCTACTTGTGCTTACG
GCATCTTTGGGATACACGCTTGTAAGAAGAGCAGAAATGAAGAAGAAGGC
TCAAGAACAAACTGCGTCCAAACTTGATTCAACGAAGGAGCCTCTGACGT
CAAGTAAAGAAGTGCGCGCAGAGAAAGCATAG
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:710753..711784-

>Gchil3385.t1 ID=Gchil3385.t1|Name=Gchil3385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000168_pilon:710753..711784- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGGATAATCCGAGTTCGCAGCCGCTCACGCGGCAGATGACCAA
CATTGCCATGGCAGTGTCCTTCTACTGGGTCATCTCCATCTCCATGGTGT
TTGCTAACAAGACGCTGCTCGGCGGCCAGGATCGTTCCTCCGCCCCGTTC
TTTATCACGTGGTCTCAGTGCGTCGTCACTGTTCTGTTCTGCTATCTTGC
GGGCAAATTCCGCGTGGCTAATGTGCCGCCTTTTGAGGTGCGCAACGACA
TCTTGAAGCAGATGCTTTCCTTGTCTTTTATCTTCACTTCTATGATTGTG
TTCAATAATCTTTGTCTCAAGTATGTCGAGGTTTCATTCTATCAGGTTGC
CCGATCGCTCACCATTGTCTTCAATGTCATCTTTGACTACGTCGTCCTGG
GACAGGTCACTTCCTTCAAAGCTATGGTGTGCTGTGCCTTCGTCGTCTCT
GGTTTTGCTCTCGGAAACGTCGAGGAGATGCGTTGGTCTCTCTTGGGAGT
CTTGTTTGGTGTCACCTCCTCATTCTTCGTCGCCATGAACTCCATATTTG
TCAAGAAGAAGTTTGTCCTCGTTGACAACAACCCCTGGAAAATCACTCTG
TACAACAATTTGAATGCCTCTTTCCTTTTCCTGCCGCTCATTTTCGGCTC
TGGTGAAATCTCTTACATCCTCACCTCCCCAGAAGTGCGCACGCTGCACT
ACTGGGTGCTTCTTTTCGGTTCTGGTCTGCTGGGTGTCAGTATTTCGTTT
GCCTCCGCCGCTCAGATCAAGTATACTTCCCCTCTAACACACAATGTCTC
TGCCACCGCAAAGGCAGCTGCGCAGACAATTATTGCCCTTCTTGTGTATC
GAAATCCCATCTCACCTCTTGGTTTCCTCGCCGTGCTACTTGTGCTTACG
GCATCTTTGGGATACACGCTTGTAAGAAGAGCAGAAATGAAGAAGAAGGC
TCAAGAACAAACTGCGTCCAAACTTGATTCAACGAAGGAGCCTCTGACGT
CAAGTAAAGAAGTGCGCGCAGAGAAAGCATAG
back to top