Gchil3382.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3382.t1
Unique Name	Gchil3382.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:702007..703794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706962.1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08959
KEGG Pathway	ko04340,ko04390,ko04540,ko04710,map04340,map04390,map04540,map04710
Evalue	2.58e-220
EggNOG OGs	KOG1164@1\|root,KOG1164@2759\|Eukaryota
EC	2.7.11.1
Description	protein kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3382	Gchil3382	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 702007..703794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3382.t1.start1	Gchil3382.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 702007..702009 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3382.t1.CDS1	Gchil3382.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 702007..703794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3382.t1.exon1	Gchil3382.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 702007..703794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3382.t1.stop1	Gchil3382.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 703792..703794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3382.t1	Gchil3382.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 702007..703794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:702007..703794+
coding sequence from alignment at tig00000168_pilon:702007..703794+

mRNA sequence

>Gchil3382.t1 ID=Gchil3382.t1|Name=Gchil3382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=596bp
MDDDSRKDPVPFQVGEGSRRYIVLKHAHLGSGHFGDVYMGEHIQTGQKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVHYTGQHGRYYVMVMDLLGPTL
QRLLESRPPRGLSWDTVSVIGYKCVQLLRKLHAKGYVHGDVKPENFLCAY
SEDSCIDPDRGLFLVDLGLASRWRDLSKPGGHIPYGQRVDHFSGTVRYAS
VNAHLGRWLSRRDDLESLGYMLLYLFNGSLPWQGYSGEDKNMQVCETKGR
MTVEAMCRGAPEVLQYFLAYVRQMKFEETPDYDYLTLLCDSNRGLKEVKK
LLIAQEKEDLRELAQPIVGSKRKQRDLDDVGAPLVKKHKVVLPKRIKTHQ
WIIVSTSARTNLSPQTQCYTSHTSYSNLVKEVERKWGLLMRITSLNFAGG
MWTAVLNSRNSGYLEQALHYCHDPDFPREWVRQKWEQSYFITSVAGNEDC
WGVVCSTMQRGRKYKQQSYIVSATFPSKWIADKWNADFHITSIATQGRFQ
MQWCVVMSRGAPYKDQCVELDFQYPSHSIHARWDENYMITAVACTHEQCA
FVMSRGASYGEEQRCTRTSHGPLHKIREDWNDSLYVTCLSYGRVS*

spliced messenger RNA

>Gchil3382.t1 ID=Gchil3382.t1|Name=Gchil3382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000168_pilon:702007..703794+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGACTCGCGCAAGGACCCTGTCCCCTTTCAGGTCGGCGAGGG
TTCTCGACGCTACATCGTCTTGAAGCATGCTCACTTGGGATCCGGCCACT
TTGGCGATGTCTACATGGGTGAGCACATCCAGACTGGTCAGAAGGTTGCC
ATCAAACTTGAACATCGATCGGGTTCCATTGCGCGTCGCGAATGGGAAGT
AATGCGTTATATGAATGGAGACGGTGCTCCTAGAGTACACTACACTGGTC
AACACGGTCGCTATTATGTCATGGTTATGGATCTGCTCGGTCCAACACTG
CAAAGACTGTTGGAGAGCAGACCCCCGCGTGGTCTATCCTGGGATACCGT
GTCAGTGATTGGATACAAGTGCGTCCAACTCCTGCGCAAATTGCATGCCA
AAGGCTACGTGCATGGAGACGTCAAGCCTGAAAACTTTCTTTGTGCCTAC
TCCGAGGACAGTTGTATTGATCCAGATCGAGGACTCTTTCTTGTTGACTT
GGGGCTTGCTTCACGCTGGAGAGATCTGTCCAAGCCGGGTGGCCACATTC
CTTATGGCCAGCGAGTGGACCATTTTTCGGGTACCGTGCGATACGCCTCA
GTAAATGCCCATCTCGGTCGCTGGTTGTCGCGACGGGATGATCTAGAAAG
CTTGGGTTACATGCTCTTGTATCTATTCAATGGTTCGCTTCCTTGGCAGG
GATACTCTGGTGAGGACAAAAACATGCAGGTTTGTGAAACAAAAGGTCGC
ATGACTGTTGAAGCTATGTGTCGCGGCGCTCCGGAAGTGCTCCAATACTT
TCTGGCGTATGTTCGTCAGATGAAGTTTGAGGAGACCCCGGACTACGACT
ATCTCACGTTGTTGTGTGATAGCAACCGTGGCCTTAAGGAAGTCAAGAAG
CTGTTGATTGCTCAGGAGAAGGAGGATCTCCGCGAACTTGCTCAACCCAT
AGTAGGCTCCAAGAGAAAGCAGCGCGATCTCGATGACGTTGGAGCCCCAC
TGGTCAAGAAACACAAAGTTGTACTTCCGAAGCGAATTAAGACTCACCAG
TGGATTATTGTTTCCACCAGCGCTCGAACAAACCTCTCTCCACAGACTCA
ATGCTACACTTCACATACTTCGTATTCTAATTTGGTTAAAGAGGTTGAGA
GGAAATGGGGGTTGCTCATGCGGATAACAAGTTTAAACTTTGCTGGTGGT
ATGTGGACCGCTGTTCTAAACTCGCGCAACTCTGGCTACTTGGAGCAAGC
ATTACATTATTGTCATGATCCAGACTTCCCACGTGAGTGGGTGCGCCAAA
AGTGGGAGCAGTCATACTTTATTACCTCTGTTGCCGGGAATGAGGATTGT
TGGGGCGTTGTGTGCTCTACGATGCAACGGGGTCGCAAATATAAACAGCA
ATCGTACATAGTGTCCGCAACATTCCCGTCGAAGTGGATCGCGGACAAGT
GGAACGCCGACTTTCATATAACATCTATTGCAACGCAAGGTCGCTTCCAG
ATGCAGTGGTGTGTCGTCATGTCAAGAGGTGCACCATACAAGGATCAGTG
TGTCGAGCTCGATTTTCAATACCCCTCACATTCCATTCATGCGCGGTGGG
ACGAAAACTATATGATAACCGCTGTTGCCTGTACACATGAGCAGTGTGCA
TTTGTCATGTCAAGAGGAGCAAGCTATGGCGAGGAACAGCGGTGCACTCG
TACGTCACACGGGCCTCTACACAAGATACGGGAGGATTGGAATGATTCTC
TTTACGTAACTTGTCTTTCGTATGGTCGAGTCAGCTAG

protein sequence of Gchil3382.t1

>Gchil3382.t1 ID=Gchil3382.t1|Name=Gchil3382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=596bp
MDDDSRKDPVPFQVGEGSRRYIVLKHAHLGSGHFGDVYMGEHIQTGQKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVHYTGQHGRYYVMVMDLLGPTL
QRLLESRPPRGLSWDTVSVIGYKCVQLLRKLHAKGYVHGDVKPENFLCAY
SEDSCIDPDRGLFLVDLGLASRWRDLSKPGGHIPYGQRVDHFSGTVRYAS
VNAHLGRWLSRRDDLESLGYMLLYLFNGSLPWQGYSGEDKNMQVCETKGR
MTVEAMCRGAPEVLQYFLAYVRQMKFEETPDYDYLTLLCDSNRGLKEVKK
LLIAQEKEDLRELAQPIVGSKRKQRDLDDVGAPLVKKHKVVLPKRIKTHQ
WIIVSTSARTNLSPQTQCYTSHTSYSNLVKEVERKWGLLMRITSLNFAGG
MWTAVLNSRNSGYLEQALHYCHDPDFPREWVRQKWEQSYFITSVAGNEDC
WGVVCSTMQRGRKYKQQSYIVSATFPSKWIADKWNADFHITSIATQGRFQ
MQWCVVMSRGAPYKDQCVELDFQYPSHSIHARWDENYMITAVACTHEQCA
FVMSRGASYGEEQRCTRTSHGPLHKIREDWNDSLYVTCLSYGRVS*

mRNA from alignment at tig00000168_pilon:702007..703794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3382.t1 ID=Gchil3382.t1|Name=Gchil3382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000168_pilon:702007..703794+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACGACTCGCGCAAGGACCCTGTCCCCTTTCAGGTCGGCGAGGG
TTCTCGACGCTACATCGTCTTGAAGCATGCTCACTTGGGATCCGGCCACT
TTGGCGATGTCTACATGGGTGAGCACATCCAGACTGGTCAGAAGGTTGCC
ATCAAACTTGAACATCGATCGGGTTCCATTGCGCGTCGCGAATGGGAAGT
AATGCGTTATATGAATGGAGACGGTGCTCCTAGAGTACACTACACTGGTC
AACACGGTCGCTATTATGTCATGGTTATGGATCTGCTCGGTCCAACACTG
CAAAGACTGTTGGAGAGCAGACCCCCGCGTGGTCTATCCTGGGATACCGT
GTCAGTGATTGGATACAAGTGCGTCCAACTCCTGCGCAAATTGCATGCCA
AAGGCTACGTGCATGGAGACGTCAAGCCTGAAAACTTTCTTTGTGCCTAC
TCCGAGGACAGTTGTATTGATCCAGATCGAGGACTCTTTCTTGTTGACTT
GGGGCTTGCTTCACGCTGGAGAGATCTGTCCAAGCCGGGTGGCCACATTC
CTTATGGCCAGCGAGTGGACCATTTTTCGGGTACCGTGCGATACGCCTCA
GTAAATGCCCATCTCGGTCGCTGGTTGTCGCGACGGGATGATCTAGAAAG
CTTGGGTTACATGCTCTTGTATCTATTCAATGGTTCGCTTCCTTGGCAGG
GATACTCTGGTGAGGACAAAAACATGCAGGTTTGTGAAACAAAAGGTCGC
ATGACTGTTGAAGCTATGTGTCGCGGCGCTCCGGAAGTGCTCCAATACTT
TCTGGCGTATGTTCGTCAGATGAAGTTTGAGGAGACCCCGGACTACGACT
ATCTCACGTTGTTGTGTGATAGCAACCGTGGCCTTAAGGAAGTCAAGAAG
CTGTTGATTGCTCAGGAGAAGGAGGATCTCCGCGAACTTGCTCAACCCAT
AGTAGGCTCCAAGAGAAAGCAGCGCGATCTCGATGACGTTGGAGCCCCAC
TGGTCAAGAAACACAAAGTTGTACTTCCGAAGCGAATTAAGACTCACCAG
TGGATTATTGTTTCCACCAGCGCTCGAACAAACCTCTCTCCACAGACTCA
ATGCTACACTTCACATACTTCGTATTCTAATTTGGTTAAAGAGGTTGAGA
GGAAATGGGGGTTGCTCATGCGGATAACAAGTTTAAACTTTGCTGGTGGT
ATGTGGACCGCTGTTCTAAACTCGCGCAACTCTGGCTACTTGGAGCAAGC
ATTACATTATTGTCATGATCCAGACTTCCCACGTGAGTGGGTGCGCCAAA
AGTGGGAGCAGTCATACTTTATTACCTCTGTTGCCGGGAATGAGGATTGT
TGGGGCGTTGTGTGCTCTACGATGCAACGGGGTCGCAAATATAAACAGCA
ATCGTACATAGTGTCCGCAACATTCCCGTCGAAGTGGATCGCGGACAAGT
GGAACGCCGACTTTCATATAACATCTATTGCAACGCAAGGTCGCTTCCAG
ATGCAGTGGTGTGTCGTCATGTCAAGAGGTGCACCATACAAGGATCAGTG
TGTCGAGCTCGATTTTCAATACCCCTCACATTCCATTCATGCGCGGTGGG
ACGAAAACTATATGATAACCGCTGTTGCCTGTACACATGAGCAGTGTGCA
TTTGTCATGTCAAGAGGAGCAAGCTATGGCGAGGAACAGCGGTGCACTCG
TACGTCACACGGGCCTCTACACAAGATACGGGAGGATTGGAATGATTCTC
TTTACGTAACTTGTCTTTCGTATGGTCGAGTCAGCTAG

Coding sequence (CDS) from alignment at tig00000168_pilon:702007..703794+

>Gchil3382.t1 ID=Gchil3382.t1|Name=Gchil3382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000168_pilon:702007..703794+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACGACTCGCGCAAGGACCCTGTCCCCTTTCAGGTCGGCGAGGG
TTCTCGACGCTACATCGTCTTGAAGCATGCTCACTTGGGATCCGGCCACT
TTGGCGATGTCTACATGGGTGAGCACATCCAGACTGGTCAGAAGGTTGCC
ATCAAACTTGAACATCGATCGGGTTCCATTGCGCGTCGCGAATGGGAAGT
AATGCGTTATATGAATGGAGACGGTGCTCCTAGAGTACACTACACTGGTC
AACACGGTCGCTATTATGTCATGGTTATGGATCTGCTCGGTCCAACACTG
CAAAGACTGTTGGAGAGCAGACCCCCGCGTGGTCTATCCTGGGATACCGT
GTCAGTGATTGGATACAAGTGCGTCCAACTCCTGCGCAAATTGCATGCCA
AAGGCTACGTGCATGGAGACGTCAAGCCTGAAAACTTTCTTTGTGCCTAC
TCCGAGGACAGTTGTATTGATCCAGATCGAGGACTCTTTCTTGTTGACTT
GGGGCTTGCTTCACGCTGGAGAGATCTGTCCAAGCCGGGTGGCCACATTC
CTTATGGCCAGCGAGTGGACCATTTTTCGGGTACCGTGCGATACGCCTCA
GTAAATGCCCATCTCGGTCGCTGGTTGTCGCGACGGGATGATCTAGAAAG
CTTGGGTTACATGCTCTTGTATCTATTCAATGGTTCGCTTCCTTGGCAGG
GATACTCTGGTGAGGACAAAAACATGCAGGTTTGTGAAACAAAAGGTCGC
ATGACTGTTGAAGCTATGTGTCGCGGCGCTCCGGAAGTGCTCCAATACTT
TCTGGCGTATGTTCGTCAGATGAAGTTTGAGGAGACCCCGGACTACGACT
ATCTCACGTTGTTGTGTGATAGCAACCGTGGCCTTAAGGAAGTCAAGAAG
CTGTTGATTGCTCAGGAGAAGGAGGATCTCCGCGAACTTGCTCAACCCAT
AGTAGGCTCCAAGAGAAAGCAGCGCGATCTCGATGACGTTGGAGCCCCAC
TGGTCAAGAAACACAAAGTTGTACTTCCGAAGCGAATTAAGACTCACCAG
TGGATTATTGTTTCCACCAGCGCTCGAACAAACCTCTCTCCACAGACTCA
ATGCTACACTTCACATACTTCGTATTCTAATTTGGTTAAAGAGGTTGAGA
GGAAATGGGGGTTGCTCATGCGGATAACAAGTTTAAACTTTGCTGGTGGT
ATGTGGACCGCTGTTCTAAACTCGCGCAACTCTGGCTACTTGGAGCAAGC
ATTACATTATTGTCATGATCCAGACTTCCCACGTGAGTGGGTGCGCCAAA
AGTGGGAGCAGTCATACTTTATTACCTCTGTTGCCGGGAATGAGGATTGT
TGGGGCGTTGTGTGCTCTACGATGCAACGGGGTCGCAAATATAAACAGCA
ATCGTACATAGTGTCCGCAACATTCCCGTCGAAGTGGATCGCGGACAAGT
GGAACGCCGACTTTCATATAACATCTATTGCAACGCAAGGTCGCTTCCAG
ATGCAGTGGTGTGTCGTCATGTCAAGAGGTGCACCATACAAGGATCAGTG
TGTCGAGCTCGATTTTCAATACCCCTCACATTCCATTCATGCGCGGTGGG
ACGAAAACTATATGATAACCGCTGTTGCCTGTACACATGAGCAGTGTGCA
TTTGTCATGTCAAGAGGAGCAAGCTATGGCGAGGAACAGCGGTGCACTCG
TACGTCACACGGGCCTCTACACAAGATACGGGAGGATTGGAATGATTCTC
TTTACGTAACTTGTCTTTCGTATGGTCGAGTCAGCTAG