Gchil3381.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3381.t1
Unique Name	Gchil3381.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	557

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:697115..698785 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85681.XP_006442449.1
PFAMs	ANAPC3,TPR_1,TPR_10,TPR_16,TPR_2,TPR_3,TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03353
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
GOs	GO:0006275,GO:0008150,GO:0009888,GO:0009889,GO:0010087,GO:0010556,GO:0010564,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0032875,GO:0048856,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:2000112
Evalue	5.78e-47
EggNOG OGs	KOG1173@1\|root,KOG1173@2759\|Eukaryota,37HX4@33090\|Viridiplantae,3GCRF@35493\|Streptophyta
Description	Anaphase-promoting complex subunit
COG category	DO
BRITE	ko00000,ko00001,ko00002,ko01009,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3381	Gchil3381	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 697115..698785 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3381.t1.stop1	Gchil3381.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 697115..697117 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3381.t1.CDS1	Gchil3381.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 697115..698785 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3381.t1.exon1	Gchil3381.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 697115..698785 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3381.t1.start1	Gchil3381.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 698783..698785 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3381.t1	Gchil3381.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 697115..698785 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:697115..698785-
coding sequence from alignment at tig00000168_pilon:697115..698785-

mRNA sequence

>Gchil3381.t1 ID=Gchil3381.t1|Name=Gchil3381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=557bp
MSQSNTNHQPISSSVNSLLSSFQQKVSLYHQLGMQQTATFYADKAASISS
TPQHSIIQARLFFSLAQYRRALHILEANQLPSQHQTARLLAAQCYFELCD
YDACLSLLGDEQGVDSAISTLTLRGAPRELHAALCVLRARVHERLENPEC
ALLWYKRAFHCDIFCVEAFQALSNAGLLPPPEAAKFVNEALTDTCSTSQS
HTHALARKWISSYYAACANRDVETPSSPPMNDNVDLKIIHAKRKFTTLDF
GACLEDCRQILHKDPHAQNVLPMYLAALVELNERHELFVTAHNLVDNAPK
SAITWLAVGYHYLVSGKPELARRFFQKCTALDMRVESAWIAIGHAFGAQD
ESDQAMAAYRTVTRLFPGSQEPHLFMGMEYVRQGSLSQAATMLRRAAEAC
PKDPAPVHELGVVLYRTGDHAGAASYFKEALTLWEAGDLSNEVSRRSGKR
AEAEEATLVNLGHCYRRLKDCNAAKRCYERALALRPRSSATCGALGMTLH
AMWDLEGAVAMYHRALRNNPEDANCSELLERALYDMFLVRPRGSADALHS
GGGMSL*

spliced messenger RNA

>Gchil3381.t1 ID=Gchil3381.t1|Name=Gchil3381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000168_pilon:697115..698785- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAATCCAACACCAATCATCAGCCCATCTCTTCTTCAGTCAACTC
ACTCCTTTCTTCATTCCAGCAAAAAGTATCACTTTATCATCAACTTGGAA
TGCAGCAAACGGCCACTTTTTATGCCGATAAAGCCGCCTCAATCTCCTCA
ACCCCACAACATTCAATAATCCAAGCTCGATTGTTCTTTTCGCTCGCCCA
ATACAGAAGAGCCTTACACATCCTAGAAGCAAACCAGCTCCCATCACAAC
ATCAGACTGCCAGACTACTAGCAGCCCAATGTTATTTTGAACTCTGCGAT
TACGATGCATGCCTCTCGCTATTGGGCGACGAACAGGGTGTAGACAGTGC
CATTTCCACATTAACTTTACGCGGAGCTCCACGCGAACTACACGCAGCGC
TTTGTGTTCTTCGCGCTCGCGTCCACGAACGTCTTGAAAATCCCGAGTGC
GCCTTGCTGTGGTACAAACGCGCGTTTCACTGCGACATATTTTGCGTCGA
AGCGTTTCAAGCACTATCGAATGCAGGCTTGCTTCCCCCACCAGAAGCTG
CAAAATTTGTCAATGAGGCGCTCACGGATACTTGCTCAACATCTCAATCT
CACACCCACGCTTTGGCCAGAAAATGGATATCGTCTTACTATGCCGCCTG
TGCGAACCGTGATGTTGAAACGCCATCATCTCCTCCAATGAACGACAACG
TCGACTTAAAGATTATCCATGCAAAAAGAAAGTTCACCACATTAGATTTC
GGCGCTTGTCTGGAAGATTGTCGACAAATACTGCACAAAGATCCGCATGC
CCAAAATGTGCTTCCGATGTACCTTGCCGCGCTGGTAGAACTCAATGAAA
GACATGAGCTCTTCGTCACGGCCCATAATCTGGTTGACAATGCTCCAAAA
TCTGCGATAACTTGGCTTGCTGTCGGGTATCACTACCTGGTCAGCGGCAA
GCCCGAACTGGCGAGACGCTTCTTTCAGAAATGCACGGCGCTTGATATGC
GAGTTGAATCTGCATGGATAGCGATTGGACACGCGTTTGGAGCTCAGGAT
GAGAGTGATCAAGCAATGGCCGCTTACCGAACGGTTACAAGATTGTTCCC
CGGGTCACAGGAACCTCATTTGTTCATGGGGATGGAGTACGTGCGGCAAG
GATCTCTAAGTCAGGCGGCAACCATGCTTCGTCGTGCTGCAGAAGCTTGC
CCAAAAGACCCCGCTCCAGTACACGAACTTGGGGTAGTTTTGTACCGCAC
GGGCGACCATGCCGGGGCTGCAAGTTATTTCAAGGAGGCATTGACGCTTT
GGGAGGCCGGAGATTTGTCGAATGAAGTGTCGCGAAGAAGCGGGAAACGA
GCAGAAGCAGAAGAGGCTACGCTTGTGAACTTAGGTCACTGTTATCGACG
GCTTAAGGACTGTAATGCTGCGAAGCGATGTTACGAGCGGGCACTGGCTC
TCCGTCCACGCAGCTCTGCTACTTGTGGTGCTCTTGGAATGACCCTGCAT
GCGATGTGGGATTTGGAGGGGGCAGTGGCCATGTATCACCGAGCCTTAAG
GAATAATCCGGAGGATGCAAATTGCAGCGAGCTCTTGGAGCGGGCACTAT
ATGATATGTTTTTAGTAAGACCACGCGGGAGCGCGGATGCACTGCACTCA
GGTGGGGGCATGTCATTGTGA

protein sequence of Gchil3381.t1

>Gchil3381.t1 ID=Gchil3381.t1|Name=Gchil3381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=557bp
MSQSNTNHQPISSSVNSLLSSFQQKVSLYHQLGMQQTATFYADKAASISS
TPQHSIIQARLFFSLAQYRRALHILEANQLPSQHQTARLLAAQCYFELCD
YDACLSLLGDEQGVDSAISTLTLRGAPRELHAALCVLRARVHERLENPEC
ALLWYKRAFHCDIFCVEAFQALSNAGLLPPPEAAKFVNEALTDTCSTSQS
HTHALARKWISSYYAACANRDVETPSSPPMNDNVDLKIIHAKRKFTTLDF
GACLEDCRQILHKDPHAQNVLPMYLAALVELNERHELFVTAHNLVDNAPK
SAITWLAVGYHYLVSGKPELARRFFQKCTALDMRVESAWIAIGHAFGAQD
ESDQAMAAYRTVTRLFPGSQEPHLFMGMEYVRQGSLSQAATMLRRAAEAC
PKDPAPVHELGVVLYRTGDHAGAASYFKEALTLWEAGDLSNEVSRRSGKR
AEAEEATLVNLGHCYRRLKDCNAAKRCYERALALRPRSSATCGALGMTLH
AMWDLEGAVAMYHRALRNNPEDANCSELLERALYDMFLVRPRGSADALHS
GGGMSL*

mRNA from alignment at tig00000168_pilon:697115..698785-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3381.t1 ID=Gchil3381.t1|Name=Gchil3381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000168_pilon:697115..698785- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACAATCCAACACCAATCATCAGCCCATCTCTTCTTCAGTCAACTC
ACTCCTTTCTTCATTCCAGCAAAAAGTATCACTTTATCATCAACTTGGAA
TGCAGCAAACGGCCACTTTTTATGCCGATAAAGCCGCCTCAATCTCCTCA
ACCCCACAACATTCAATAATCCAAGCTCGATTGTTCTTTTCGCTCGCCCA
ATACAGAAGAGCCTTACACATCCTAGAAGCAAACCAGCTCCCATCACAAC
ATCAGACTGCCAGACTACTAGCAGCCCAATGTTATTTTGAACTCTGCGAT
TACGATGCATGCCTCTCGCTATTGGGCGACGAACAGGGTGTAGACAGTGC
CATTTCCACATTAACTTTACGCGGAGCTCCACGCGAACTACACGCAGCGC
TTTGTGTTCTTCGCGCTCGCGTCCACGAACGTCTTGAAAATCCCGAGTGC
GCCTTGCTGTGGTACAAACGCGCGTTTCACTGCGACATATTTTGCGTCGA
AGCGTTTCAAGCACTATCGAATGCAGGCTTGCTTCCCCCACCAGAAGCTG
CAAAATTTGTCAATGAGGCGCTCACGGATACTTGCTCAACATCTCAATCT
CACACCCACGCTTTGGCCAGAAAATGGATATCGTCTTACTATGCCGCCTG
TGCGAACCGTGATGTTGAAACGCCATCATCTCCTCCAATGAACGACAACG
TCGACTTAAAGATTATCCATGCAAAAAGAAAGTTCACCACATTAGATTTC
GGCGCTTGTCTGGAAGATTGTCGACAAATACTGCACAAAGATCCGCATGC
CCAAAATGTGCTTCCGATGTACCTTGCCGCGCTGGTAGAACTCAATGAAA
GACATGAGCTCTTCGTCACGGCCCATAATCTGGTTGACAATGCTCCAAAA
TCTGCGATAACTTGGCTTGCTGTCGGGTATCACTACCTGGTCAGCGGCAA
GCCCGAACTGGCGAGACGCTTCTTTCAGAAATGCACGGCGCTTGATATGC
GAGTTGAATCTGCATGGATAGCGATTGGACACGCGTTTGGAGCTCAGGAT
GAGAGTGATCAAGCAATGGCCGCTTACCGAACGGTTACAAGATTGTTCCC
CGGGTCACAGGAACCTCATTTGTTCATGGGGATGGAGTACGTGCGGCAAG
GATCTCTAAGTCAGGCGGCAACCATGCTTCGTCGTGCTGCAGAAGCTTGC
CCAAAAGACCCCGCTCCAGTACACGAACTTGGGGTAGTTTTGTACCGCAC
GGGCGACCATGCCGGGGCTGCAAGTTATTTCAAGGAGGCATTGACGCTTT
GGGAGGCCGGAGATTTGTCGAATGAAGTGTCGCGAAGAAGCGGGAAACGA
GCAGAAGCAGAAGAGGCTACGCTTGTGAACTTAGGTCACTGTTATCGACG
GCTTAAGGACTGTAATGCTGCGAAGCGATGTTACGAGCGGGCACTGGCTC
TCCGTCCACGCAGCTCTGCTACTTGTGGTGCTCTTGGAATGACCCTGCAT
GCGATGTGGGATTTGGAGGGGGCAGTGGCCATGTATCACCGAGCCTTAAG
GAATAATCCGGAGGATGCAAATTGCAGCGAGCTCTTGGAGCGGGCACTAT
ATGATATGTTTTTAGTAAGACCACGCGGGAGCGCGGATGCACTGCACTCA
GGTGGGGGCATGTCATTGTGA

Coding sequence (CDS) from alignment at tig00000168_pilon:697115..698785-

>Gchil3381.t1 ID=Gchil3381.t1|Name=Gchil3381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1671bp|location=Sequence derived from alignment at tig00000168_pilon:697115..698785- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACAATCCAACACCAATCATCAGCCCATCTCTTCTTCAGTCAACTC
ACTCCTTTCTTCATTCCAGCAAAAAGTATCACTTTATCATCAACTTGGAA
TGCAGCAAACGGCCACTTTTTATGCCGATAAAGCCGCCTCAATCTCCTCA
ACCCCACAACATTCAATAATCCAAGCTCGATTGTTCTTTTCGCTCGCCCA
ATACAGAAGAGCCTTACACATCCTAGAAGCAAACCAGCTCCCATCACAAC
ATCAGACTGCCAGACTACTAGCAGCCCAATGTTATTTTGAACTCTGCGAT
TACGATGCATGCCTCTCGCTATTGGGCGACGAACAGGGTGTAGACAGTGC
CATTTCCACATTAACTTTACGCGGAGCTCCACGCGAACTACACGCAGCGC
TTTGTGTTCTTCGCGCTCGCGTCCACGAACGTCTTGAAAATCCCGAGTGC
GCCTTGCTGTGGTACAAACGCGCGTTTCACTGCGACATATTTTGCGTCGA
AGCGTTTCAAGCACTATCGAATGCAGGCTTGCTTCCCCCACCAGAAGCTG
CAAAATTTGTCAATGAGGCGCTCACGGATACTTGCTCAACATCTCAATCT
CACACCCACGCTTTGGCCAGAAAATGGATATCGTCTTACTATGCCGCCTG
TGCGAACCGTGATGTTGAAACGCCATCATCTCCTCCAATGAACGACAACG
TCGACTTAAAGATTATCCATGCAAAAAGAAAGTTCACCACATTAGATTTC
GGCGCTTGTCTGGAAGATTGTCGACAAATACTGCACAAAGATCCGCATGC
CCAAAATGTGCTTCCGATGTACCTTGCCGCGCTGGTAGAACTCAATGAAA
GACATGAGCTCTTCGTCACGGCCCATAATCTGGTTGACAATGCTCCAAAA
TCTGCGATAACTTGGCTTGCTGTCGGGTATCACTACCTGGTCAGCGGCAA
GCCCGAACTGGCGAGACGCTTCTTTCAGAAATGCACGGCGCTTGATATGC
GAGTTGAATCTGCATGGATAGCGATTGGACACGCGTTTGGAGCTCAGGAT
GAGAGTGATCAAGCAATGGCCGCTTACCGAACGGTTACAAGATTGTTCCC
CGGGTCACAGGAACCTCATTTGTTCATGGGGATGGAGTACGTGCGGCAAG
GATCTCTAAGTCAGGCGGCAACCATGCTTCGTCGTGCTGCAGAAGCTTGC
CCAAAAGACCCCGCTCCAGTACACGAACTTGGGGTAGTTTTGTACCGCAC
GGGCGACCATGCCGGGGCTGCAAGTTATTTCAAGGAGGCATTGACGCTTT
GGGAGGCCGGAGATTTGTCGAATGAAGTGTCGCGAAGAAGCGGGAAACGA
GCAGAAGCAGAAGAGGCTACGCTTGTGAACTTAGGTCACTGTTATCGACG
GCTTAAGGACTGTAATGCTGCGAAGCGATGTTACGAGCGGGCACTGGCTC
TCCGTCCACGCAGCTCTGCTACTTGTGGTGCTCTTGGAATGACCCTGCAT
GCGATGTGGGATTTGGAGGGGGCAGTGGCCATGTATCACCGAGCCTTAAG
GAATAATCCGGAGGATGCAAATTGCAGCGAGCTCTTGGAGCGGGCACTAT
ATGATATGTTTTTAGTAAGACCACGCGGGAGCGCGGATGCACTGCACTCA
GGTGGGGGCATGTCATTGTGA