Gchil3378.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3378.t1
Unique NameGchil3378.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:692051..693770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28985.XP_453887.1
Preferred nameVPS34
PFAMsPI3K_C2,PI3Ka,PI3_PI4_kinase
Max annot lvl4751|Fungi
KEGG rclassRC00002,RC00078
KEGG koko:K00914
KEGG ReactionR03362
KEGG Pathwayko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04145,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04145,map04371,map05152,map05167
GOsGO:0000003,GO:0000045,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005942,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010720,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016301,GO:0016303,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019898,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022607,GO:0023052,GO:0030154,GO:0030242,GO:0030258,GO:0030435,GO:0030437,GO:0031090,GO:0031321,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031982,GO:0032120,GO:0032502,GO:0032505,GO:0032784,GO:0032786,GO:0032968,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034243,GO:0034271,GO:0034272,GO:0034293,GO:0034306,GO:0034307,GO:0034613,GO:0035004,GO:0035032,GO:0035556,GO:0036092,GO:0036211,GO:0042173,GO:0042579,GO:0042763,GO:0042764,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043902,GO:0043934,GO:0043935,GO:0043937,GO:0043938,GO:0043940,GO:0043941,GO:0044085,GO:0044091,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0045595,GO:0045597,GO:0045787,GO:0045881,GO:0045893,GO:0045935,GO:0045944,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0046907,GO:0048015,GO:0048017,GO:0048468,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051321,GO:0051445,GO:0051446,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0052742,GO:0060255,GO:0060284,GO:0061024,GO:0061695,GO:0061919,GO:0065007,GO:0070727,GO:0070925,GO:0071561,GO:0071704,GO:0071709,GO:0071840,GO:0072657,GO:0072665,GO:0075296,GO:0080090,GO:0090068,GO:0090407,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0140096,GO:1901564,GO:1901576,GO:1902494,GO:1902657,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:1905037,GO:1990234,GO:2000112,GO:2000241,GO:2000243,GO:2001141
Evalue0.00048
EggNOG OGsCOG5032@1|root,KOG0906@2759|Eukaryota,38BZG@33154|Opisthokonta,3NWH2@4751|Fungi,3QMAM@4890|Ascomycota,3RTDB@4891|Saccharomycetes,3RYM2@4893|Saccharomycetaceae
EC2.7.1.137
DescriptionBelongs to the PI3 PI4-kinase family
COG categoryTU
BiGG ReactioniMM904.YLR240W,iND750.YLR240W
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3378Gchil3378Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 692051..693770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3378.t1Gchil3378.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 692051..693770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3378.t1.start1Gchil3378.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 692051..692053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3378.t1.CDS1Gchil3378.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 692051..692662 +
Gchil3378.t1.CDS2Gchil3378.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 692775..693770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3378.t1.exon1Gchil3378.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 692051..692662 +
Gchil3378.t1.exon2Gchil3378.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 692775..693770 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3378.t1.intron1Gchil3378.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 692663..692774 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3378.t1.stop1Gchil3378.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 693768..693770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3378.t1 ID=Gchil3378.t1|Name=Gchil3378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=536bp
MKNLLLSQSTPSKFVSSLPRVSVKSPKSPSTTSISCAGRSPSSSCSATLP
FPPRIPPFSALSFSSGPDSTHDSDFEQMSVHRFYKDLMAEKKATPRLVAD
CSEQQLLLFLPLVMHSIQSQLPTEPSPLLRPLLIRLCLSRRLKLRFLLLR
KHPAFHKLQSSLSFVSRGYNEFVLSRIWSSTEPDCVSPKNDMLSGKVLRI
PVDMVDLQTEDFFRNIVFEQPRKENHDFGFQLICHPFRASNVIQEPSFTE
TDEEESPLFSSQSDAMDDYYPDQQLAESATVHVEEDQIAIELRHLSYEED
IVSYKNMIPLLPRLIVRTETNMLKTQLCQMMFVFFNSIWSAPSPKYPNVH
AAPICVTFDVIASGRDQGLIRAFCHVKTISSFRFDFWQDTRGRDPVVVDE
FIRSAAGAFTAAYICGINTLQKDAFCVKDGTAFFLYLVEDIFQGPAQPKI
GIPKIMRRCFIDMGSWDDFRACCMRAFHSLRERYSDIFSIMLPLFSALCD
MDEKSIWLHLYSKYCFNLKEQNPRKAAHNFGKWLG*
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spliced messenger RNA

>Gchil3378.t1 ID=Gchil3378.t1|Name=Gchil3378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000168_pilon:692051..693770+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAACCTACTCTTGTCCCAGTCAACTCCATCCAAATTCGTATCCTC
CTTGCCGAGAGTATCTGTAAAGAGTCCAAAATCCCCATCAACCACATCAA
TATCCTGTGCGGGACGGTCTCCGTCTAGTTCTTGCTCGGCAACGCTCCCA
TTTCCTCCACGAATACCTCCATTTAGTGCTTTGAGCTTTTCTTCCGGACC
GGATTCAACTCATGATTCAGACTTCGAGCAAATGTCCGTGCACCGTTTCT
ACAAAGACCTTATGGCTGAAAAGAAGGCAACTCCTCGCCTCGTGGCCGAC
TGCTCTGAGCAGCAATTGTTGCTTTTTCTTCCCCTTGTAATGCACTCCAT
CCAAAGCCAATTGCCTACCGAGCCTTCGCCACTTTTGCGCCCATTGTTGA
TACGGTTATGTTTATCTAGGCGACTCAAATTGCGCTTCTTGCTGCTCCGA
AAGCATCCCGCTTTTCACAAGTTGCAATCAAGCCTTTCCTTTGTATCACG
CGGATACAATGAGTTTGTTCTTTCCCGTATTTGGTCTTCAACGGAGCCAG
ACTGTGTATCTCCTAAGAACGACATGTTAAGCGGCAAAGTTTTGCGTATA
CCAGTTGATATGGTTGACCTTCAAACAGAAGATTTTTTTCGAAACATCGT
CTTCGAACAACCGCGGAAAGAAAATCATGACTTTGGGTTCCAGCTTATTT
GTCATCCATTTCGTGCTTCGAACGTAATTCAAGAGCCTTCCTTTACTGAA
ACGGATGAGGAAGAATCGCCACTTTTTTCGTCACAGTCTGATGCCATGGA
CGATTATTACCCTGACCAACAGCTCGCAGAATCGGCAACCGTGCACGTAG
AGGAAGATCAAATAGCAATTGAGCTTCGCCATCTATCATATGAGGAAGAC
ATCGTCAGTTATAAGAATATGATACCGCTCCTGCCACGTCTTATCGTTCG
GACAGAAACAAATATGCTCAAAACACAACTTTGCCAAATGATGTTCGTCT
TTTTCAACAGCATATGGTCCGCTCCAAGCCCAAAGTATCCTAATGTTCAT
GCAGCGCCGATATGTGTAACTTTTGATGTAATTGCATCTGGACGAGACCA
AGGTTTAATACGGGCTTTCTGTCATGTGAAGACAATCTCTAGCTTTCGTT
TTGACTTTTGGCAGGACACGCGCGGAAGGGATCCCGTCGTAGTCGATGAA
TTTATTAGGAGTGCTGCCGGTGCATTCACAGCAGCTTACATCTGCGGTAT
CAATACTCTGCAAAAAGACGCATTTTGTGTCAAAGACGGGACTGCTTTTT
TCTTGTATCTTGTTGAGGACATATTTCAGGGCCCAGCACAACCGAAGATA
GGAATCCCGAAAATAATGCGACGATGTTTCATTGACATGGGGAGCTGGGA
TGATTTCCGTGCCTGTTGTATGAGAGCATTTCATAGCCTGAGAGAACGTT
ACAGTGACATATTTTCAATCATGTTGCCATTGTTTTCCGCTCTTTGCGAT
ATGGATGAGAAAAGCATTTGGCTTCATTTATACTCAAAATATTGCTTCAA
TTTGAAAGAGCAAAACCCACGCAAAGCGGCCCATAACTTTGGAAAATGGC
TTGGATGA
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protein sequence of Gchil3378.t1

>Gchil3378.t1 ID=Gchil3378.t1|Name=Gchil3378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=536bp
MKNLLLSQSTPSKFVSSLPRVSVKSPKSPSTTSISCAGRSPSSSCSATLP
FPPRIPPFSALSFSSGPDSTHDSDFEQMSVHRFYKDLMAEKKATPRLVAD
CSEQQLLLFLPLVMHSIQSQLPTEPSPLLRPLLIRLCLSRRLKLRFLLLR
KHPAFHKLQSSLSFVSRGYNEFVLSRIWSSTEPDCVSPKNDMLSGKVLRI
PVDMVDLQTEDFFRNIVFEQPRKENHDFGFQLICHPFRASNVIQEPSFTE
TDEEESPLFSSQSDAMDDYYPDQQLAESATVHVEEDQIAIELRHLSYEED
IVSYKNMIPLLPRLIVRTETNMLKTQLCQMMFVFFNSIWSAPSPKYPNVH
AAPICVTFDVIASGRDQGLIRAFCHVKTISSFRFDFWQDTRGRDPVVVDE
FIRSAAGAFTAAYICGINTLQKDAFCVKDGTAFFLYLVEDIFQGPAQPKI
GIPKIMRRCFIDMGSWDDFRACCMRAFHSLRERYSDIFSIMLPLFSALCD
MDEKSIWLHLYSKYCFNLKEQNPRKAAHNFGKWLG*
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mRNA from alignment at tig00000168_pilon:692051..693770+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3378.t1 ID=Gchil3378.t1|Name=Gchil3378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1720bp|location=Sequence derived from alignment at tig00000168_pilon:692051..693770+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAACCTACTCTTGTCCCAGTCAACTCCATCCAAATTCGTATCCTC
CTTGCCGAGAGTATCTGTAAAGAGTCCAAAATCCCCATCAACCACATCAA
TATCCTGTGCGGGACGGTCTCCGTCTAGTTCTTGCTCGGCAACGCTCCCA
TTTCCTCCACGAATACCTCCATTTAGTGCTTTGAGCTTTTCTTCCGGACC
GGATTCAACTCATGATTCAGACTTCGAGCAAATGTCCGTGCACCGTTTCT
ACAAAGACCTTATGGCTGAAAAGAAGGCAACTCCTCGCCTCGTGGCCGAC
TGCTCTGAGCAGCAATTGTTGCTTTTTCTTCCCCTTGTAATGCACTCCAT
CCAAAGCCAATTGCCTACCGAGCCTTCGCCACTTTTGCGCCCATTGTTGA
TACGGTTATGTTTATCTAGGCGACTCAAATTGCGCTTCTTGCTGCTCCGA
AAGCATCCCGCTTTTCACAAGTTGCAATCAAGCCTTTCCTTTGTATCACG
CGGATACAATGAGTTTGTTCTTTCCCGTATTTGGTCTTCAACGGAGCCAG
ACTGTGTATCTCCTAAGAACGACATGTTAAGCGGCAAAGTTTTGCGTATA
CCAGTTGATATGGTACGTTTTTGTGTGATATTTACATATTCGTCTCTGTT
TTCGAGAGCAAAAAGTTTATCAGAAACATAGACTAACGTTTCCCGTGTCT
TTTGAAACTGTTTCGTACGCCCAGGTTGACCTTCAAACAGAAGATTTTTT
TCGAAACATCGTCTTCGAACAACCGCGGAAAGAAAATCATGACTTTGGGT
TCCAGCTTATTTGTCATCCATTTCGTGCTTCGAACGTAATTCAAGAGCCT
TCCTTTACTGAAACGGATGAGGAAGAATCGCCACTTTTTTCGTCACAGTC
TGATGCCATGGACGATTATTACCCTGACCAACAGCTCGCAGAATCGGCAA
CCGTGCACGTAGAGGAAGATCAAATAGCAATTGAGCTTCGCCATCTATCA
TATGAGGAAGACATCGTCAGTTATAAGAATATGATACCGCTCCTGCCACG
TCTTATCGTTCGGACAGAAACAAATATGCTCAAAACACAACTTTGCCAAA
TGATGTTCGTCTTTTTCAACAGCATATGGTCCGCTCCAAGCCCAAAGTAT
CCTAATGTTCATGCAGCGCCGATATGTGTAACTTTTGATGTAATTGCATC
TGGACGAGACCAAGGTTTAATACGGGCTTTCTGTCATGTGAAGACAATCT
CTAGCTTTCGTTTTGACTTTTGGCAGGACACGCGCGGAAGGGATCCCGTC
GTAGTCGATGAATTTATTAGGAGTGCTGCCGGTGCATTCACAGCAGCTTA
CATCTGCGGTATCAATACTCTGCAAAAAGACGCATTTTGTGTCAAAGACG
GGACTGCTTTTTTCTTGTATCTTGTTGAGGACATATTTCAGGGCCCAGCA
CAACCGAAGATAGGAATCCCGAAAATAATGCGACGATGTTTCATTGACAT
GGGGAGCTGGGATGATTTCCGTGCCTGTTGTATGAGAGCATTTCATAGCC
TGAGAGAACGTTACAGTGACATATTTTCAATCATGTTGCCATTGTTTTCC
GCTCTTTGCGATATGGATGAGAAAAGCATTTGGCTTCATTTATACTCAAA
ATATTGCTTCAATTTGAAAGAGCAAAACCCACGCAAAGCGGCCCATAACT
TTGGAAAATGGCTTGGATGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:692051..693770+

>Gchil3378.t1 ID=Gchil3378.t1|Name=Gchil3378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000168_pilon:692051..693770+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAACCTACTCTTGTCCCAGTCAACTCCATCCAAATTCGTATCCTC
CTTGCCGAGAGTATCTGTAAAGAGTCCAAAATCCCCATCAACCACATCAA
TATCCTGTGCGGGACGGTCTCCGTCTAGTTCTTGCTCGGCAACGCTCCCA
TTTCCTCCACGAATACCTCCATTTAGTGCTTTGAGCTTTTCTTCCGGACC
GGATTCAACTCATGATTCAGACTTCGAGCAAATGTCCGTGCACCGTTTCT
ACAAAGACCTTATGGCTGAAAAGAAGGCAACTCCTCGCCTCGTGGCCGAC
TGCTCTGAGCAGCAATTGTTGCTTTTTCTTCCCCTTGTAATGCACTCCAT
CCAAAGCCAATTGCCTACCGAGCCTTCGCCACTTTTGCGCCCATTGTTGA
TACGGTTATGTTTATCTAGGCGACTCAAATTGCGCTTCTTGCTGCTCCGA
AAGCATCCCGCTTTTCACAAGTTGCAATCAAGCCTTTCCTTTGTATCACG
CGGATACAATGAGTTTGTTCTTTCCCGTATTTGGTCTTCAACGGAGCCAG
ACTGTGTATCTCCTAAGAACGACATGTTAAGCGGCAAAGTTTTGCGTATA
CCAGTTGATATGGTTGACCTTCAAACAGAAGATTTTTTTCGAAACATCGT
CTTCGAACAACCGCGGAAAGAAAATCATGACTTTGGGTTCCAGCTTATTT
GTCATCCATTTCGTGCTTCGAACGTAATTCAAGAGCCTTCCTTTACTGAA
ACGGATGAGGAAGAATCGCCACTTTTTTCGTCACAGTCTGATGCCATGGA
CGATTATTACCCTGACCAACAGCTCGCAGAATCGGCAACCGTGCACGTAG
AGGAAGATCAAATAGCAATTGAGCTTCGCCATCTATCATATGAGGAAGAC
ATCGTCAGTTATAAGAATATGATACCGCTCCTGCCACGTCTTATCGTTCG
GACAGAAACAAATATGCTCAAAACACAACTTTGCCAAATGATGTTCGTCT
TTTTCAACAGCATATGGTCCGCTCCAAGCCCAAAGTATCCTAATGTTCAT
GCAGCGCCGATATGTGTAACTTTTGATGTAATTGCATCTGGACGAGACCA
AGGTTTAATACGGGCTTTCTGTCATGTGAAGACAATCTCTAGCTTTCGTT
TTGACTTTTGGCAGGACACGCGCGGAAGGGATCCCGTCGTAGTCGATGAA
TTTATTAGGAGTGCTGCCGGTGCATTCACAGCAGCTTACATCTGCGGTAT
CAATACTCTGCAAAAAGACGCATTTTGTGTCAAAGACGGGACTGCTTTTT
TCTTGTATCTTGTTGAGGACATATTTCAGGGCCCAGCACAACCGAAGATA
GGAATCCCGAAAATAATGCGACGATGTTTCATTGACATGGGGAGCTGGGA
TGATTTCCGTGCCTGTTGTATGAGAGCATTTCATAGCCTGAGAGAACGTT
ACAGTGACATATTTTCAATCATGTTGCCATTGTTTTCCGCTCTTTGCGAT
ATGGATGAGAAAAGCATTTGGCTTCATTTATACTCAAAATATTGCTTCAA
TTTGAAAGAGCAAAACCCACGCAAAGCGGCCCATAACTTTGGAAAATGGC
TTGGATGA
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