Gchil3375.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3375.t1
Unique NameGchil3375.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length756
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:627991..630258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000006516
Preferred namePLCD4
PFAMsC2,EF-hand_10,EF-hand_like,PH,PI-PLC-X,PI-PLC-Y
Max annot lvl33208|Metazoa
KEGG rclassRC00017,RC00425
KEGG koko:K05857
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004435,GO:0004620,GO:0004629,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006066,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0007338,GO:0007340,GO:0008081,GO:0008150,GO:0008152,GO:0009566,GO:0009987,GO:0012505,GO:0016020,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0019751,GO:0019953,GO:0022414,GO:0023052,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0035556,GO:0042175,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043647,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046486,GO:0046488,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0098827,GO:1901615
Evalue2.6e-78
EggNOG OGsKOG0169@1|root,KOG0169@2759|Eukaryota,38BAR@33154|Opisthokonta,3BDCE@33208|Metazoa,3CRFD@33213|Bilateria,481HT@7711|Chordata,492N0@7742|Vertebrata,49ZFR@7898|Actinopterygii
EC3.1.4.11
Description1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3375Gchil3375Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 627991..630258 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3375.t1.start1Gchil3375.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 627991..627993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3375.t1.CDS1Gchil3375.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 627991..630258 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3375.t1.exon1Gchil3375.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 627991..630258 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3375.t1.stop1Gchil3375.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 630256..630258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3375.t1Gchil3375.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 627991..630258 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3375.t1 ID=Gchil3375.t1|Name=Gchil3375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp
MTDLADHIASLQSDVEKLTGSRHWLRRMTKKRRWKRKILTLTSEAVLNYR
DLHSHHIKTFVLLPASAKPATTQEHIDNRRSHIFILTAVPISQVTSITAD
RHIFYFAIRDCKQAADWIFMANKLAAQRVASTHAPLTPFNAPFLAAWGHV
PRLPLSQIPSVAKSLCLKLSVEDFQNTARRAGSPIDGHHVSFADFASVMA
YSANTEVTSTIFQTISTDGNPVGPDALGSLLRCTPSRALELLKHHGVEKC
SPQLLAAVLHHPMNSIVDPLLVKEKHDMTRPLNQYLISSSHNTYLESDQL
RGDSTAQMYHIVLKRGCRCVEIDMWDGDDDKPVVTHGHTMTSEVSLEKVL
NTIREHAFSHGTDYPLILSLENHLSHRQQIKAASLICEILGDYLYRPDFP
GMHVDVLPSPEKLRGRVLLKAKTGHSIYIESKPSELSNIEDEDSDEPEES
PRTVKSGGDEPSSSSSGSEKASKANQTSNIADEIAQLVYLAGGNRNILME
LWNKGASGKDKFIASSCVSINEKKIAEVWENGTQSVNAIRDYNSHGLTRV
YPKGSRVDSSNYTPTLAHHMGCQIVALNWQKHDNGMAVNEARFLANNGCG
YVLSESVRNPLSLPPQTLHVQLLSAFMLPKPKSSNNRDMIDPYCVIKLYD
ENFSDENEYSSAKFDSQPIRSNGFSPIWKETALLEVKNRALAVIVLKVYD
HDRTSDDDLIGYCAVPTSLLREGYRCFPLSSKEGEALTLPSTDLCPSVLC
NVIWT*
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spliced messenger RNA

>Gchil3375.t1 ID=Gchil3375.t1|Name=Gchil3375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000168_pilon:627991..630258+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACCTCGCAGACCATATCGCTTCGCTGCAATCTGACGTGGAGAA
GCTCACCGGTTCCCGCCACTGGCTTCGTCGCATGACCAAGAAGCGTCGCT
GGAAGCGAAAAATTCTCACTCTCACCTCGGAAGCTGTCTTGAACTATCGT
GACTTGCACAGTCATCACATAAAGACTTTTGTTCTATTGCCTGCCTCCGC
CAAACCAGCCACTACTCAGGAGCATATCGATAACCGTCGCTCACACATCT
TCATTCTCACAGCTGTTCCCATTTCACAAGTCACGAGTATCACCGCCGAT
CGTCACATTTTCTACTTCGCTATTCGGGACTGCAAACAAGCTGCCGATTG
GATCTTCATGGCAAACAAGCTCGCAGCGCAGCGTGTGGCCTCAACACATG
CGCCACTTACCCCATTCAATGCTCCTTTTCTCGCCGCATGGGGTCATGTT
CCGCGCCTACCGCTCTCTCAAATACCAAGTGTGGCGAAATCACTCTGTCT
CAAGCTTAGTGTCGAAGACTTTCAGAATACTGCTCGTCGAGCTGGCAGCC
CTATCGATGGTCATCATGTTTCGTTCGCGGATTTCGCTAGTGTCATGGCT
TATTCCGCCAACACTGAAGTCACTTCCACTATCTTTCAGACCATATCAAC
GGACGGAAATCCGGTGGGACCCGATGCGCTTGGTTCCTTGTTGCGTTGCA
CACCATCTCGAGCGCTGGAACTTCTCAAACACCACGGCGTCGAGAAATGT
TCTCCACAGCTGTTAGCCGCTGTGCTACATCATCCAATGAACTCCATCGT
TGACCCGCTTCTGGTCAAAGAAAAGCACGATATGACTCGTCCTCTCAACC
AATACCTCATATCATCCTCCCACAACACATATTTGGAATCTGATCAGCTT
AGAGGCGATAGTACCGCTCAAATGTATCACATTGTGCTAAAAAGAGGTTG
TCGATGTGTGGAGATTGATATGTGGGACGGCGATGACGACAAACCCGTCG
TCACCCATGGTCACACTATGACTTCAGAGGTTTCTCTTGAAAAAGTCCTA
AACACCATCCGGGAACATGCCTTCTCACATGGAACCGACTATCCTCTCAT
ACTTAGTTTGGAAAACCACCTTAGCCATCGCCAGCAAATCAAGGCGGCGT
CCCTCATATGCGAAATCTTGGGTGATTACCTCTACAGGCCAGATTTTCCA
GGCATGCATGTGGACGTACTTCCGAGTCCCGAAAAACTCAGAGGCAGAGT
TTTACTGAAGGCAAAGACTGGTCATTCCATATATATTGAGTCGAAGCCGT
CCGAGCTTTCGAACATAGAAGACGAAGACTCAGATGAACCTGAGGAATCT
CCGAGAACAGTGAAGTCAGGGGGCGATGAGCCTTCCTCGTCATCCTCAGG
TTCAGAGAAGGCCTCAAAGGCGAACCAAACAAGCAATATTGCAGATGAAA
TTGCACAGCTTGTCTATCTCGCAGGTGGCAACCGAAATATATTAATGGAA
TTGTGGAACAAAGGCGCATCTGGCAAAGATAAGTTCATTGCATCTTCATG
TGTGTCCATTAATGAAAAGAAGATTGCTGAAGTTTGGGAGAATGGAACTC
AAAGCGTCAATGCGATTCGTGATTATAACTCCCACGGGCTGACAAGAGTT
TATCCGAAAGGCTCGAGAGTTGACTCATCCAACTACACACCTACCCTTGC
TCATCACATGGGATGCCAAATCGTTGCTCTTAATTGGCAGAAACACGACA
ACGGGATGGCCGTCAATGAAGCACGGTTCCTGGCCAACAACGGATGTGGA
TATGTTCTGTCAGAAAGTGTTCGCAATCCCCTCTCTTTGCCGCCCCAGAC
TTTGCACGTACAGCTCCTCTCTGCTTTTATGCTCCCGAAACCGAAATCGT
CAAACAATCGGGATATGATTGACCCCTACTGTGTGATCAAACTCTATGAC
GAAAACTTCTCTGACGAAAATGAGTATTCTTCGGCCAAGTTCGATTCACA
ACCAATTCGCTCAAATGGGTTTTCCCCAATATGGAAGGAAACCGCCTTGC
TAGAAGTCAAGAATCGTGCGCTCGCCGTTATCGTCCTGAAAGTCTATGAT
CATGACCGCACTTCCGACGATGATTTGATAGGATACTGCGCAGTGCCAAC
ATCGCTACTACGTGAAGGTTACAGGTGCTTTCCTTTGTCTTCAAAGGAAG
GCGAAGCTCTAACATTACCCAGTACGGATTTATGCCCCTCAGTTCTTTGC
AATGTTATATGGACTTGA
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protein sequence of Gchil3375.t1

>Gchil3375.t1 ID=Gchil3375.t1|Name=Gchil3375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=756bp
MTDLADHIASLQSDVEKLTGSRHWLRRMTKKRRWKRKILTLTSEAVLNYR
DLHSHHIKTFVLLPASAKPATTQEHIDNRRSHIFILTAVPISQVTSITAD
RHIFYFAIRDCKQAADWIFMANKLAAQRVASTHAPLTPFNAPFLAAWGHV
PRLPLSQIPSVAKSLCLKLSVEDFQNTARRAGSPIDGHHVSFADFASVMA
YSANTEVTSTIFQTISTDGNPVGPDALGSLLRCTPSRALELLKHHGVEKC
SPQLLAAVLHHPMNSIVDPLLVKEKHDMTRPLNQYLISSSHNTYLESDQL
RGDSTAQMYHIVLKRGCRCVEIDMWDGDDDKPVVTHGHTMTSEVSLEKVL
NTIREHAFSHGTDYPLILSLENHLSHRQQIKAASLICEILGDYLYRPDFP
GMHVDVLPSPEKLRGRVLLKAKTGHSIYIESKPSELSNIEDEDSDEPEES
PRTVKSGGDEPSSSSSGSEKASKANQTSNIADEIAQLVYLAGGNRNILME
LWNKGASGKDKFIASSCVSINEKKIAEVWENGTQSVNAIRDYNSHGLTRV
YPKGSRVDSSNYTPTLAHHMGCQIVALNWQKHDNGMAVNEARFLANNGCG
YVLSESVRNPLSLPPQTLHVQLLSAFMLPKPKSSNNRDMIDPYCVIKLYD
ENFSDENEYSSAKFDSQPIRSNGFSPIWKETALLEVKNRALAVIVLKVYD
HDRTSDDDLIGYCAVPTSLLREGYRCFPLSSKEGEALTLPSTDLCPSVLC
NVIWT*
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mRNA from alignment at tig00000168_pilon:627991..630258+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3375.t1 ID=Gchil3375.t1|Name=Gchil3375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000168_pilon:627991..630258+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGACCTCGCAGACCATATCGCTTCGCTGCAATCTGACGTGGAGAA GCTCACCGGTTCCCGCCACTGGCTTCGTCGCATGACCAAGAAGCGTCGCT GGAAGCGAAAAATTCTCACTCTCACCTCGGAAGCTGTCTTGAACTATCGT GACTTGCACAGTCATCACATAAAGACTTTTGTTCTATTGCCTGCCTCCGC CAAACCAGCCACTACTCAGGAGCATATCGATAACCGTCGCTCACACATCT TCATTCTCACAGCTGTTCCCATTTCACAAGTCACGAGTATCACCGCCGAT CGTCACATTTTCTACTTCGCTATTCGGGACTGCAAACAAGCTGCCGATTG GATCTTCATGGCAAACAAGCTCGCAGCGCAGCGTGTGGCCTCAACACATG CGCCACTTACCCCATTCAATGCTCCTTTTCTCGCCGCATGGGGTCATGTT CCGCGCCTACCGCTCTCTCAAATACCAAGTGTGGCGAAATCACTCTGTCT CAAGCTTAGTGTCGAAGACTTTCAGAATACTGCTCGTCGAGCTGGCAGCC CTATCGATGGTCATCATGTTTCGTTCGCGGATTTCGCTAGTGTCATGGCT TATTCCGCCAACACTGAAGTCACTTCCACTATCTTTCAGACCATATCAAC GGACGGAAATCCGGTGGGACCCGATGCGCTTGGTTCCTTGTTGCGTTGCA CACCATCTCGAGCGCTGGAACTTCTCAAACACCACGGCGTCGAGAAATGT TCTCCACAGCTGTTAGCCGCTGTGCTACATCATCCAATGAACTCCATCGT TGACCCGCTTCTGGTCAAAGAAAAGCACGATATGACTCGTCCTCTCAACC AATACCTCATATCATCCTCCCACAACACATATTTGGAATCTGATCAGCTT AGAGGCGATAGTACCGCTCAAATGTATCACATTGTGCTAAAAAGAGGTTG TCGATGTGTGGAGATTGATATGTGGGACGGCGATGACGACAAACCCGTCG TCACCCATGGTCACACTATGACTTCAGAGGTTTCTCTTGAAAAAGTCCTA AACACCATCCGGGAACATGCCTTCTCACATGGAACCGACTATCCTCTCAT ACTTAGTTTGGAAAACCACCTTAGCCATCGCCAGCAAATCAAGGCGGCGT CCCTCATATGCGAAATCTTGGGTGATTACCTCTACAGGCCAGATTTTCCA GGCATGCATGTGGACGTACTTCCGAGTCCCGAAAAACTCAGAGGCAGAGT TTTACTGAAGGCAAAGACTGGTCATTCCATATATATTGAGTCGAAGCCGT CCGAGCTTTCGAACATAGAAGACGAAGACTCAGATGAACCTGAGGAATCT CCGAGAACAGTGAAGTCAGGGGGCGATGAGCCTTCCTCGTCATCCTCAGG TTCAGAGAAGGCCTCAAAGGCGAACCAAACAAGCAATATTGCAGATGAAA TTGCACAGCTTGTCTATCTCGCAGGTGGCAACCGAAATATATTAATGGAA TTGTGGAACAAAGGCGCATCTGGCAAAGATAAGTTCATTGCATCTTCATG TGTGTCCATTAATGAAAAGAAGATTGCTGAAGTTTGGGAGAATGGAACTC AAAGCGTCAATGCGATTCGTGATTATAACTCCCACGGGCTGACAAGAGTT TATCCGAAAGGCTCGAGAGTTGACTCATCCAACTACACACCTACCCTTGC TCATCACATGGGATGCCAAATCGTTGCTCTTAATTGGCAGAAACACGACA ACGGGATGGCCGTCAATGAAGCACGGTTCCTGGCCAACAACGGATGTGGA TATGTTCTGTCAGAAAGTGTTCGCAATCCCCTCTCTTTGCCGCCCCAGAC TTTGCACGTACAGCTCCTCTCTGCTTTTATGCTCCCGAAACCGAAATCGT CAAACAATCGGGATATGATTGACCCCTACTGTGTGATCAAACTCTATGAC GAAAACTTCTCTGACGAAAATGAGTATTCTTCGGCCAAGTTCGATTCACA ACCAATTCGCTCAAATGGGTTTTCCCCAATATGGAAGGAAACCGCCTTGC TAGAAGTCAAGAATCGTGCGCTCGCCGTTATCGTCCTGAAAGTCTATGAT CATGACCGCACTTCCGACGATGATTTGATAGGATACTGCGCAGTGCCAAC ATCGCTACTACGTGAAGGTTACAGGTGCTTTCCTTTGTCTTCAAAGGAAG GCGAAGCTCTAACATTACCCAGTACGGATTTATGCCCCTCAGTTCTTTGC AATGTTATATGGACTTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:627991..630258+

>Gchil3375.t1 ID=Gchil3375.t1|Name=Gchil3375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2268bp|location=Sequence derived from alignment at tig00000168_pilon:627991..630258+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGACCTCGCAGACCATATCGCTTCGCTGCAATCTGACGTGGAGAA
GCTCACCGGTTCCCGCCACTGGCTTCGTCGCATGACCAAGAAGCGTCGCT
GGAAGCGAAAAATTCTCACTCTCACCTCGGAAGCTGTCTTGAACTATCGT
GACTTGCACAGTCATCACATAAAGACTTTTGTTCTATTGCCTGCCTCCGC
CAAACCAGCCACTACTCAGGAGCATATCGATAACCGTCGCTCACACATCT
TCATTCTCACAGCTGTTCCCATTTCACAAGTCACGAGTATCACCGCCGAT
CGTCACATTTTCTACTTCGCTATTCGGGACTGCAAACAAGCTGCCGATTG
GATCTTCATGGCAAACAAGCTCGCAGCGCAGCGTGTGGCCTCAACACATG
CGCCACTTACCCCATTCAATGCTCCTTTTCTCGCCGCATGGGGTCATGTT
CCGCGCCTACCGCTCTCTCAAATACCAAGTGTGGCGAAATCACTCTGTCT
CAAGCTTAGTGTCGAAGACTTTCAGAATACTGCTCGTCGAGCTGGCAGCC
CTATCGATGGTCATCATGTTTCGTTCGCGGATTTCGCTAGTGTCATGGCT
TATTCCGCCAACACTGAAGTCACTTCCACTATCTTTCAGACCATATCAAC
GGACGGAAATCCGGTGGGACCCGATGCGCTTGGTTCCTTGTTGCGTTGCA
CACCATCTCGAGCGCTGGAACTTCTCAAACACCACGGCGTCGAGAAATGT
TCTCCACAGCTGTTAGCCGCTGTGCTACATCATCCAATGAACTCCATCGT
TGACCCGCTTCTGGTCAAAGAAAAGCACGATATGACTCGTCCTCTCAACC
AATACCTCATATCATCCTCCCACAACACATATTTGGAATCTGATCAGCTT
AGAGGCGATAGTACCGCTCAAATGTATCACATTGTGCTAAAAAGAGGTTG
TCGATGTGTGGAGATTGATATGTGGGACGGCGATGACGACAAACCCGTCG
TCACCCATGGTCACACTATGACTTCAGAGGTTTCTCTTGAAAAAGTCCTA
AACACCATCCGGGAACATGCCTTCTCACATGGAACCGACTATCCTCTCAT
ACTTAGTTTGGAAAACCACCTTAGCCATCGCCAGCAAATCAAGGCGGCGT
CCCTCATATGCGAAATCTTGGGTGATTACCTCTACAGGCCAGATTTTCCA
GGCATGCATGTGGACGTACTTCCGAGTCCCGAAAAACTCAGAGGCAGAGT
TTTACTGAAGGCAAAGACTGGTCATTCCATATATATTGAGTCGAAGCCGT
CCGAGCTTTCGAACATAGAAGACGAAGACTCAGATGAACCTGAGGAATCT
CCGAGAACAGTGAAGTCAGGGGGCGATGAGCCTTCCTCGTCATCCTCAGG
TTCAGAGAAGGCCTCAAAGGCGAACCAAACAAGCAATATTGCAGATGAAA
TTGCACAGCTTGTCTATCTCGCAGGTGGCAACCGAAATATATTAATGGAA
TTGTGGAACAAAGGCGCATCTGGCAAAGATAAGTTCATTGCATCTTCATG
TGTGTCCATTAATGAAAAGAAGATTGCTGAAGTTTGGGAGAATGGAACTC
AAAGCGTCAATGCGATTCGTGATTATAACTCCCACGGGCTGACAAGAGTT
TATCCGAAAGGCTCGAGAGTTGACTCATCCAACTACACACCTACCCTTGC
TCATCACATGGGATGCCAAATCGTTGCTCTTAATTGGCAGAAACACGACA
ACGGGATGGCCGTCAATGAAGCACGGTTCCTGGCCAACAACGGATGTGGA
TATGTTCTGTCAGAAAGTGTTCGCAATCCCCTCTCTTTGCCGCCCCAGAC
TTTGCACGTACAGCTCCTCTCTGCTTTTATGCTCCCGAAACCGAAATCGT
CAAACAATCGGGATATGATTGACCCCTACTGTGTGATCAAACTCTATGAC
GAAAACTTCTCTGACGAAAATGAGTATTCTTCGGCCAAGTTCGATTCACA
ACCAATTCGCTCAAATGGGTTTTCCCCAATATGGAAGGAAACCGCCTTGC
TAGAAGTCAAGAATCGTGCGCTCGCCGTTATCGTCCTGAAAGTCTATGAT
CATGACCGCACTTCCGACGATGATTTGATAGGATACTGCGCAGTGCCAAC
ATCGCTACTACGTGAAGGTTACAGGTGCTTTCCTTTGTCTTCAAAGGAAG
GCGAAGCTCTAACATTACCCAGTACGGATTTATGCCCCTCAGTTCTTTGC
AATGTTATATGGACTTGA
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