Gchil3372.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3372.t1
Unique NameGchil3372.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length107
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:547481..548024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173029.JH980292_gene1288
Preferred namefkpA
PFAMsFKBP_C
Max annot lvl1117|Cyanobacteria
KEGG koko:K01802,ko:K03772
Evalue3.25e-25
EggNOG OGsCOG0545@1|root,COG0545@2|Bacteria,1G5T1@1117|Cyanobacteria,1HAQ3@1150|Oscillatoriales
EC5.2.1.8
DescriptionPFAM FKBP-type peptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3372Gchil3372Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 547481..548024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3372.t1Gchil3372.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 547481..548024 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3372.t1.stop1Gchil3372.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 547481..547483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3372.t1.CDS1Gchil3372.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 547481..547515 -
Gchil3372.t1.CDS2Gchil3372.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 547636..547757 -
Gchil3372.t1.CDS3Gchil3372.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 547861..548024 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3372.t1.exon1Gchil3372.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 547481..547515 -
Gchil3372.t1.exon2Gchil3372.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 547636..547757 -
Gchil3372.t1.exon3Gchil3372.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 547861..548024 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3372.t1.intron1Gchil3372.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 547516..547635 -
Gchil3372.t1.intron2Gchil3372.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 547758..547860 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3372.t1.start1Gchil3372.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 548022..548024 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3372.t1 ID=Gchil3372.t1|Name=Gchil3372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=107bp
MSAAGAEVQKEDLVVGTGAGLRPEDNVHVHYTLTLGGFDSEQVIDSSRSR
GRPFQFRYDTGAVIKGWDLGIAGMKEGGRRRLVIPSELGYGTRGAGKSRV
HLRAVQ*
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spliced messenger RNA

>Gchil3372.t1 ID=Gchil3372.t1|Name=Gchil3372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000168_pilon:547481..548024- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGGCCGGAGCAGAGGTCCAGAAGGAAGATCTGGTGGTAGGCAC
TGGGGCGGGGCTCAGGCCTGAGGACAATGTTCATGTGCACTACACCTTGA
CTCTGGGCGGGTTTGACAGCGAGCAGGTGATCGACAGTTCCAGATCGCGT
GGAAGGCCATTCCAGTTTCGATACGACACGGGAGCGGTGATCAAGGGTTG
GGACCTTGGCATTGCAGGTATGAAAGAGGGCGGTCGCAGGCGCCTGGTGA
TTCCTTCGGAATTGGGTTACGGGACGAGAGGGGCTGGAAAAAGTCGAGTG
CATTTAAGGGCAGTGCAATGA
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protein sequence of Gchil3372.t1

>Gchil3372.t1 ID=Gchil3372.t1|Name=Gchil3372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=107bp
MSAAGAEVQKEDLVVGTGAGLRPEDNVHVHYTLTLGGFDSEQVIDSSRSR
GRPFQFRYDTGAVIKGWDLGIAGMKEGGRRRLVIPSELGYGTRGAGKSRV
HLRAVQ*
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mRNA from alignment at tig00000168_pilon:547481..548024-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3372.t1 ID=Gchil3372.t1|Name=Gchil3372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=544bp|location=Sequence derived from alignment at tig00000168_pilon:547481..548024- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCGGCCGGAGCAGAGGTCCAGAAGGAAGATCTGGTGGTAGGCAC
TGGGGCGGGGCTCAGGCCTGAGGACAATGTTCATGTGCACTACACCTTGA
CTCTGGGCGGGTTTGACAGCGAGCAGGTGATCGACAGTTCCAGATCGCGT
GGAAGGCCATTCCAGTAAGTAATTTGCAACTGTTTTGAGCAATGCCTTTG
GGCGTTATCGTGCATATCTAACAAGTGTGACGAGTGTGCGTGACGTTTTT
GGAATGACTTGTGGTAGGTTTCGATACGACACGGGAGCGGTGATCAAGGG
TTGGGACCTTGGCATTGCAGGTATGAAAGAGGGCGGTCGCAGGCGCCTGG
TGATTCCTTCGGAATTGGGTTACGGGACGAGAGGGGCTGGTGCGTTGATT
CCTCCAAATTCTACGTTATACTTTGACGTTGAACTTATCAAGGTGGGCTG
GTAGGCTTTTGGATACGCGTTCTAATGCTGAGCATGTTTATGTGCTGTGG
CGTTTGTAGGAAAAAGTCGAGTGCATTTAAGGGCAGTGCAATGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:547481..548024-

>Gchil3372.t1 ID=Gchil3372.t1|Name=Gchil3372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=321bp|location=Sequence derived from alignment at tig00000168_pilon:547481..548024- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCGGCCGGAGCAGAGGTCCAGAAGGAAGATCTGGTGGTAGGCAC
TGGGGCGGGGCTCAGGCCTGAGGACAATGTTCATGTGCACTACACCTTGA
CTCTGGGCGGGTTTGACAGCGAGCAGGTGATCGACAGTTCCAGATCGCGT
GGAAGGCCATTCCAGTTTCGATACGACACGGGAGCGGTGATCAAGGGTTG
GGACCTTGGCATTGCAGGTATGAAAGAGGGCGGTCGCAGGCGCCTGGTGA
TTCCTTCGGAATTGGGTTACGGGACGAGAGGGGCTGGAAAAAGTCGAGTG
CATTTAAGGGCAGTGCAATGA
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