Gchil3370.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3370.t1
Unique NameGchil3370.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:543669..545204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707431.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue8.31e-94
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3370Gchil3370Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 543669..545204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3370.t1.stop1Gchil3370.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 543669..543671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3370.t1.CDS1Gchil3370.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 543669..545204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3370.t1.exon1Gchil3370.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 543669..545204 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3370.t1.start1Gchil3370.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 545202..545204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3370.t1Gchil3370.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 543669..545204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3370.t1 ID=Gchil3370.t1|Name=Gchil3370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=512bp
MSPIRRRSHAPTSVTATLSSSLPTDTRTASPRHSPFFSLPSDSVILAALT
AVAAVTRFYALSHPKAVVFDEFHFFRFLRHHLQRQFVFDIHPWLGKLTHF
VVASVFRVSPEPSFDIRVGAPYYNNDYVISRFTSALFGVFCVPLMYLIAR
ELTLSRPVSFLAAFMPLCDNLLLMESRYVLLDSQLITYINLTLLCALRLW
RYTRVEYASPRYYRALLYTAVSAALAMSVKWTAAVTPFLIALVCAFGVSF
LDKPIPLLDSMLAAVVALGTYLIPWFVYLRISINSTPYATHMSDAFRHTL
RGNQTFPYRPDHNVTFLQSVFELHWRQFRANQNVRTRHPWESRWYEWPTN
ARGLLLFLDKAPGYTDQNPLVQALYLIQNPAGALWVSMAVVTSILLLLVL
QRYRTLVSPKHRIFKSAVTARFLCAGYILNLVPYMFVERCYFNYHYLPAL
TYGQLLLAVLVDVLPRPVRYPALFLIISTTSAAFVYWSPWIYGTTITFGF
HRQLQWMPRWS*
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spliced messenger RNA

>Gchil3370.t1 ID=Gchil3370.t1|Name=Gchil3370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000168_pilon:543669..545204- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCAATTCGACGAAGGAGCCATGCGCCAACGTCTGTCACCGCCAC
CCTGTCCTCGTCTCTCCCCACTGATACGCGCACCGCATCCCCTCGCCATA
GCCCCTTCTTCAGCCTGCCGTCCGACTCAGTCATCCTCGCTGCGCTCACC
GCTGTCGCCGCTGTCACCCGCTTTTACGCACTCTCTCATCCCAAGGCCGT
AGTCTTCGACGAGTTTCACTTCTTCCGCTTCTTGCGCCACCACTTGCAGA
GACAGTTTGTGTTTGATATCCATCCTTGGCTTGGAAAGCTCACCCATTTT
GTCGTCGCCTCTGTGTTTCGTGTCTCGCCTGAGCCAAGCTTCGATATCCG
CGTTGGCGCCCCCTACTACAACAACGATTATGTCATTTCTCGCTTTACAT
CAGCGCTGTTTGGCGTCTTCTGCGTACCCCTCATGTATCTTATCGCTCGA
GAGCTCACCTTGTCTCGACCAGTGTCATTTCTAGCCGCATTTATGCCCTT
GTGTGACAATCTCTTACTCATGGAAAGCCGATACGTCCTCCTCGATTCTC
AACTCATAACCTACATTAATTTGACCTTACTCTGCGCTCTACGCCTGTGG
CGCTACACGCGAGTTGAATACGCTTCCCCTCGTTACTACAGAGCTCTATT
GTACACCGCAGTGAGCGCCGCTCTTGCAATGTCAGTCAAGTGGACGGCCG
CCGTCACTCCGTTTCTCATTGCACTAGTCTGCGCATTCGGCGTCAGCTTT
CTCGACAAGCCTATACCTCTACTCGATTCGATGCTCGCAGCCGTCGTTGC
TCTAGGCACCTACCTTATTCCCTGGTTTGTTTATCTCCGTATCTCTATCA
ACAGCACTCCGTATGCAACACACATGTCCGATGCCTTTCGCCATACCTTG
CGCGGCAATCAAACTTTTCCCTATCGCCCCGATCACAACGTCACCTTTCT
ACAATCAGTTTTCGAGCTCCACTGGCGACAGTTTCGCGCCAACCAAAATG
TCCGCACCAGGCATCCATGGGAAAGTCGCTGGTACGAATGGCCGACCAAC
GCCCGAGGCTTGCTTTTGTTTCTTGACAAAGCACCAGGGTATACCGATCA
AAACCCATTGGTTCAAGCGCTGTACCTTATACAAAACCCCGCCGGTGCGC
TCTGGGTGTCCATGGCGGTAGTGACCAGTATTCTTCTCTTACTCGTGTTA
CAGAGGTATCGAACTCTCGTATCACCAAAGCACCGCATTTTTAAATCAGC
TGTCACGGCAAGATTCTTGTGCGCGGGTTATATCTTGAATCTGGTTCCGT
ACATGTTCGTGGAGCGGTGTTATTTCAATTACCACTATTTGCCGGCATTG
ACTTATGGGCAGCTGCTCTTAGCTGTTCTTGTGGATGTTTTGCCTAGGCC
AGTTCGTTATCCTGCACTATTCCTGATCATATCCACAACATCGGCCGCCT
TTGTGTACTGGTCCCCATGGATATATGGCACAACTATTACATTTGGTTTC
CATAGACAACTGCAATGGATGCCGCGGTGGAGTTAA
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protein sequence of Gchil3370.t1

>Gchil3370.t1 ID=Gchil3370.t1|Name=Gchil3370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=512bp
MSPIRRRSHAPTSVTATLSSSLPTDTRTASPRHSPFFSLPSDSVILAALT
AVAAVTRFYALSHPKAVVFDEFHFFRFLRHHLQRQFVFDIHPWLGKLTHF
VVASVFRVSPEPSFDIRVGAPYYNNDYVISRFTSALFGVFCVPLMYLIAR
ELTLSRPVSFLAAFMPLCDNLLLMESRYVLLDSQLITYINLTLLCALRLW
RYTRVEYASPRYYRALLYTAVSAALAMSVKWTAAVTPFLIALVCAFGVSF
LDKPIPLLDSMLAAVVALGTYLIPWFVYLRISINSTPYATHMSDAFRHTL
RGNQTFPYRPDHNVTFLQSVFELHWRQFRANQNVRTRHPWESRWYEWPTN
ARGLLLFLDKAPGYTDQNPLVQALYLIQNPAGALWVSMAVVTSILLLLVL
QRYRTLVSPKHRIFKSAVTARFLCAGYILNLVPYMFVERCYFNYHYLPAL
TYGQLLLAVLVDVLPRPVRYPALFLIISTTSAAFVYWSPWIYGTTITFGF
HRQLQWMPRWS*
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mRNA from alignment at tig00000168_pilon:543669..545204-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3370.t1 ID=Gchil3370.t1|Name=Gchil3370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000168_pilon:543669..545204- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCAATTCGACGAAGGAGCCATGCGCCAACGTCTGTCACCGCCAC
CCTGTCCTCGTCTCTCCCCACTGATACGCGCACCGCATCCCCTCGCCATA
GCCCCTTCTTCAGCCTGCCGTCCGACTCAGTCATCCTCGCTGCGCTCACC
GCTGTCGCCGCTGTCACCCGCTTTTACGCACTCTCTCATCCCAAGGCCGT
AGTCTTCGACGAGTTTCACTTCTTCCGCTTCTTGCGCCACCACTTGCAGA
GACAGTTTGTGTTTGATATCCATCCTTGGCTTGGAAAGCTCACCCATTTT
GTCGTCGCCTCTGTGTTTCGTGTCTCGCCTGAGCCAAGCTTCGATATCCG
CGTTGGCGCCCCCTACTACAACAACGATTATGTCATTTCTCGCTTTACAT
CAGCGCTGTTTGGCGTCTTCTGCGTACCCCTCATGTATCTTATCGCTCGA
GAGCTCACCTTGTCTCGACCAGTGTCATTTCTAGCCGCATTTATGCCCTT
GTGTGACAATCTCTTACTCATGGAAAGCCGATACGTCCTCCTCGATTCTC
AACTCATAACCTACATTAATTTGACCTTACTCTGCGCTCTACGCCTGTGG
CGCTACACGCGAGTTGAATACGCTTCCCCTCGTTACTACAGAGCTCTATT
GTACACCGCAGTGAGCGCCGCTCTTGCAATGTCAGTCAAGTGGACGGCCG
CCGTCACTCCGTTTCTCATTGCACTAGTCTGCGCATTCGGCGTCAGCTTT
CTCGACAAGCCTATACCTCTACTCGATTCGATGCTCGCAGCCGTCGTTGC
TCTAGGCACCTACCTTATTCCCTGGTTTGTTTATCTCCGTATCTCTATCA
ACAGCACTCCGTATGCAACACACATGTCCGATGCCTTTCGCCATACCTTG
CGCGGCAATCAAACTTTTCCCTATCGCCCCGATCACAACGTCACCTTTCT
ACAATCAGTTTTCGAGCTCCACTGGCGACAGTTTCGCGCCAACCAAAATG
TCCGCACCAGGCATCCATGGGAAAGTCGCTGGTACGAATGGCCGACCAAC
GCCCGAGGCTTGCTTTTGTTTCTTGACAAAGCACCAGGGTATACCGATCA
AAACCCATTGGTTCAAGCGCTGTACCTTATACAAAACCCCGCCGGTGCGC
TCTGGGTGTCCATGGCGGTAGTGACCAGTATTCTTCTCTTACTCGTGTTA
CAGAGGTATCGAACTCTCGTATCACCAAAGCACCGCATTTTTAAATCAGC
TGTCACGGCAAGATTCTTGTGCGCGGGTTATATCTTGAATCTGGTTCCGT
ACATGTTCGTGGAGCGGTGTTATTTCAATTACCACTATTTGCCGGCATTG
ACTTATGGGCAGCTGCTCTTAGCTGTTCTTGTGGATGTTTTGCCTAGGCC
AGTTCGTTATCCTGCACTATTCCTGATCATATCCACAACATCGGCCGCCT
TTGTGTACTGGTCCCCATGGATATATGGCACAACTATTACATTTGGTTTC
CATAGACAACTGCAATGGATGCCGCGGTGGAGTTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:543669..545204-

>Gchil3370.t1 ID=Gchil3370.t1|Name=Gchil3370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1536bp|location=Sequence derived from alignment at tig00000168_pilon:543669..545204- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCAATTCGACGAAGGAGCCATGCGCCAACGTCTGTCACCGCCAC
CCTGTCCTCGTCTCTCCCCACTGATACGCGCACCGCATCCCCTCGCCATA
GCCCCTTCTTCAGCCTGCCGTCCGACTCAGTCATCCTCGCTGCGCTCACC
GCTGTCGCCGCTGTCACCCGCTTTTACGCACTCTCTCATCCCAAGGCCGT
AGTCTTCGACGAGTTTCACTTCTTCCGCTTCTTGCGCCACCACTTGCAGA
GACAGTTTGTGTTTGATATCCATCCTTGGCTTGGAAAGCTCACCCATTTT
GTCGTCGCCTCTGTGTTTCGTGTCTCGCCTGAGCCAAGCTTCGATATCCG
CGTTGGCGCCCCCTACTACAACAACGATTATGTCATTTCTCGCTTTACAT
CAGCGCTGTTTGGCGTCTTCTGCGTACCCCTCATGTATCTTATCGCTCGA
GAGCTCACCTTGTCTCGACCAGTGTCATTTCTAGCCGCATTTATGCCCTT
GTGTGACAATCTCTTACTCATGGAAAGCCGATACGTCCTCCTCGATTCTC
AACTCATAACCTACATTAATTTGACCTTACTCTGCGCTCTACGCCTGTGG
CGCTACACGCGAGTTGAATACGCTTCCCCTCGTTACTACAGAGCTCTATT
GTACACCGCAGTGAGCGCCGCTCTTGCAATGTCAGTCAAGTGGACGGCCG
CCGTCACTCCGTTTCTCATTGCACTAGTCTGCGCATTCGGCGTCAGCTTT
CTCGACAAGCCTATACCTCTACTCGATTCGATGCTCGCAGCCGTCGTTGC
TCTAGGCACCTACCTTATTCCCTGGTTTGTTTATCTCCGTATCTCTATCA
ACAGCACTCCGTATGCAACACACATGTCCGATGCCTTTCGCCATACCTTG
CGCGGCAATCAAACTTTTCCCTATCGCCCCGATCACAACGTCACCTTTCT
ACAATCAGTTTTCGAGCTCCACTGGCGACAGTTTCGCGCCAACCAAAATG
TCCGCACCAGGCATCCATGGGAAAGTCGCTGGTACGAATGGCCGACCAAC
GCCCGAGGCTTGCTTTTGTTTCTTGACAAAGCACCAGGGTATACCGATCA
AAACCCATTGGTTCAAGCGCTGTACCTTATACAAAACCCCGCCGGTGCGC
TCTGGGTGTCCATGGCGGTAGTGACCAGTATTCTTCTCTTACTCGTGTTA
CAGAGGTATCGAACTCTCGTATCACCAAAGCACCGCATTTTTAAATCAGC
TGTCACGGCAAGATTCTTGTGCGCGGGTTATATCTTGAATCTGGTTCCGT
ACATGTTCGTGGAGCGGTGTTATTTCAATTACCACTATTTGCCGGCATTG
ACTTATGGGCAGCTGCTCTTAGCTGTTCTTGTGGATGTTTTGCCTAGGCC
AGTTCGTTATCCTGCACTATTCCTGATCATATCCACAACATCGGCCGCCT
TTGTGTACTGGTCCCCATGGATATATGGCACAACTATTACATTTGGTTTC
CATAGACAACTGCAATGGATGCCGCGGTGGAGTTAA
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