Gchil3369.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3369.t1
Unique NameGchil3369.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:541390..542517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708602.1
PFAMsPALP
Max annot lvl2759|Eukaryota
Evalue1.05e-76
EggNOG OGsCOG1171@1|root,KOG1250@2759|Eukaryota
DescriptionL-threonine ammonia-lyase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3369Gchil3369Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 541390..542517 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3369.t1.stop1Gchil3369.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 541390..541392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3369.t1.CDS1Gchil3369.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 541390..542517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3369.t1.exon1Gchil3369.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 541390..542517 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3369.t1.start1Gchil3369.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 542515..542517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3369.t1Gchil3369.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 541390..542517 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3369.t1 ID=Gchil3369.t1|Name=Gchil3369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=376bp
MFGQPPETGVFSLFEEDPKGGATSAFRATLSWNGQLSCAQHFAALCTTAQ
RTLQNHRRRNPGAVLWTPMLRSYSLGSSVFVKLESEQVTNSFKVRGAINR
VQNAGAKHIVAASTGNHALAVVHAINLLALEGTMFLPQNVSQNKLSALQR
FAEGGKCEIQLTGKDCLEAELAASNFAKQREAVYVSPYNDELVIAGQGTI
GFEILEYLRMSYPLYAGRKKCCYVTIGGGGLVAGVSAVLKANQPGQWRVV
GCLPQNSPVMFECMKTGRICAVPCKETLSDGSAGQIEQNAITFEACSHLV
DAWAIVSEEEIRLAMRDVLAFEHKLVEGSAGVAVAGMRRDSKWRDANDCV
ASVVIACGGNVSVDTILKVTMGTPG*
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spliced messenger RNA

>Gchil3369.t1 ID=Gchil3369.t1|Name=Gchil3369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000168_pilon:541390..542517- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGGCCAGCCGCCTGAAACTGGAGTCTTTTCTCTTTTCGAAGAAGA
TCCCAAGGGAGGTGCAACGTCAGCGTTTAGAGCAACACTCTCGTGGAATG
GCCAGCTTAGCTGTGCGCAACATTTCGCTGCATTATGCACCACAGCTCAA
CGGACGTTGCAGAACCACCGGAGGCGAAACCCCGGCGCTGTCCTCTGGAC
TCCGATGCTACGCTCTTACTCTCTCGGCTCATCGGTGTTTGTCAAGCTCG
AGAGCGAACAAGTCACCAACTCATTCAAGGTACGAGGAGCAATTAACCGC
GTACAAAACGCTGGGGCGAAGCATATCGTGGCGGCCTCAACAGGAAATCA
CGCCTTGGCAGTGGTACACGCCATAAATCTGCTCGCCTTGGAAGGGACAA
TGTTTCTACCACAGAATGTTTCACAAAACAAACTTAGTGCCCTGCAACGC
TTCGCGGAGGGAGGCAAATGCGAGATTCAACTTACAGGGAAGGACTGTCT
CGAAGCTGAACTAGCAGCCTCTAATTTCGCCAAACAACGTGAAGCAGTTT
ATGTGTCGCCATATAATGATGAGCTCGTCATAGCAGGTCAAGGGACTATA
GGGTTCGAGATCTTGGAATACTTAAGGATGTCATACCCGTTATATGCAGG
CCGTAAAAAATGTTGCTACGTCACCATTGGTGGAGGGGGGCTTGTTGCAG
GTGTTTCAGCCGTTTTGAAAGCGAATCAGCCCGGGCAATGGCGCGTTGTG
GGCTGTCTGCCTCAGAATTCTCCGGTGATGTTTGAATGTATGAAGACCGG
CCGAATATGTGCGGTTCCCTGCAAGGAAACGCTCTCAGATGGAAGTGCCG
GTCAAATAGAGCAAAATGCAATCACGTTCGAGGCTTGCTCTCACTTGGTT
GATGCATGGGCTATTGTGTCTGAAGAAGAAATCAGACTTGCGATGCGCGA
CGTTCTTGCGTTCGAGCACAAGCTGGTAGAAGGCTCAGCTGGCGTGGCTG
TCGCAGGTATGCGACGAGACTCCAAATGGCGAGACGCGAATGATTGCGTC
GCATCCGTTGTAATAGCCTGTGGCGGGAATGTAAGCGTTGATACAATTCT
TAAGGTAACAATGGGCACACCCGGATAG
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protein sequence of Gchil3369.t1

>Gchil3369.t1 ID=Gchil3369.t1|Name=Gchil3369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MFGQPPETGVFSLFEEDPKGGATSAFRATLSWNGQLSCAQHFAALCTTAQ
RTLQNHRRRNPGAVLWTPMLRSYSLGSSVFVKLESEQVTNSFKVRGAINR
VQNAGAKHIVAASTGNHALAVVHAINLLALEGTMFLPQNVSQNKLSALQR
FAEGGKCEIQLTGKDCLEAELAASNFAKQREAVYVSPYNDELVIAGQGTI
GFEILEYLRMSYPLYAGRKKCCYVTIGGGGLVAGVSAVLKANQPGQWRVV
GCLPQNSPVMFECMKTGRICAVPCKETLSDGSAGQIEQNAITFEACSHLV
DAWAIVSEEEIRLAMRDVLAFEHKLVEGSAGVAVAGMRRDSKWRDANDCV
ASVVIACGGNVSVDTILKVTMGTPG*
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mRNA from alignment at tig00000168_pilon:541390..542517-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3369.t1 ID=Gchil3369.t1|Name=Gchil3369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000168_pilon:541390..542517- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGGCCAGCCGCCTGAAACTGGAGTCTTTTCTCTTTTCGAAGAAGA
TCCCAAGGGAGGTGCAACGTCAGCGTTTAGAGCAACACTCTCGTGGAATG
GCCAGCTTAGCTGTGCGCAACATTTCGCTGCATTATGCACCACAGCTCAA
CGGACGTTGCAGAACCACCGGAGGCGAAACCCCGGCGCTGTCCTCTGGAC
TCCGATGCTACGCTCTTACTCTCTCGGCTCATCGGTGTTTGTCAAGCTCG
AGAGCGAACAAGTCACCAACTCATTCAAGGTACGAGGAGCAATTAACCGC
GTACAAAACGCTGGGGCGAAGCATATCGTGGCGGCCTCAACAGGAAATCA
CGCCTTGGCAGTGGTACACGCCATAAATCTGCTCGCCTTGGAAGGGACAA
TGTTTCTACCACAGAATGTTTCACAAAACAAACTTAGTGCCCTGCAACGC
TTCGCGGAGGGAGGCAAATGCGAGATTCAACTTACAGGGAAGGACTGTCT
CGAAGCTGAACTAGCAGCCTCTAATTTCGCCAAACAACGTGAAGCAGTTT
ATGTGTCGCCATATAATGATGAGCTCGTCATAGCAGGTCAAGGGACTATA
GGGTTCGAGATCTTGGAATACTTAAGGATGTCATACCCGTTATATGCAGG
CCGTAAAAAATGTTGCTACGTCACCATTGGTGGAGGGGGGCTTGTTGCAG
GTGTTTCAGCCGTTTTGAAAGCGAATCAGCCCGGGCAATGGCGCGTTGTG
GGCTGTCTGCCTCAGAATTCTCCGGTGATGTTTGAATGTATGAAGACCGG
CCGAATATGTGCGGTTCCCTGCAAGGAAACGCTCTCAGATGGAAGTGCCG
GTCAAATAGAGCAAAATGCAATCACGTTCGAGGCTTGCTCTCACTTGGTT
GATGCATGGGCTATTGTGTCTGAAGAAGAAATCAGACTTGCGATGCGCGA
CGTTCTTGCGTTCGAGCACAAGCTGGTAGAAGGCTCAGCTGGCGTGGCTG
TCGCAGGTATGCGACGAGACTCCAAATGGCGAGACGCGAATGATTGCGTC
GCATCCGTTGTAATAGCCTGTGGCGGGAATGTAAGCGTTGATACAATTCT
TAAGGTAACAATGGGCACACCCGGATAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:541390..542517-

>Gchil3369.t1 ID=Gchil3369.t1|Name=Gchil3369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000168_pilon:541390..542517- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGGCCAGCCGCCTGAAACTGGAGTCTTTTCTCTTTTCGAAGAAGA
TCCCAAGGGAGGTGCAACGTCAGCGTTTAGAGCAACACTCTCGTGGAATG
GCCAGCTTAGCTGTGCGCAACATTTCGCTGCATTATGCACCACAGCTCAA
CGGACGTTGCAGAACCACCGGAGGCGAAACCCCGGCGCTGTCCTCTGGAC
TCCGATGCTACGCTCTTACTCTCTCGGCTCATCGGTGTTTGTCAAGCTCG
AGAGCGAACAAGTCACCAACTCATTCAAGGTACGAGGAGCAATTAACCGC
GTACAAAACGCTGGGGCGAAGCATATCGTGGCGGCCTCAACAGGAAATCA
CGCCTTGGCAGTGGTACACGCCATAAATCTGCTCGCCTTGGAAGGGACAA
TGTTTCTACCACAGAATGTTTCACAAAACAAACTTAGTGCCCTGCAACGC
TTCGCGGAGGGAGGCAAATGCGAGATTCAACTTACAGGGAAGGACTGTCT
CGAAGCTGAACTAGCAGCCTCTAATTTCGCCAAACAACGTGAAGCAGTTT
ATGTGTCGCCATATAATGATGAGCTCGTCATAGCAGGTCAAGGGACTATA
GGGTTCGAGATCTTGGAATACTTAAGGATGTCATACCCGTTATATGCAGG
CCGTAAAAAATGTTGCTACGTCACCATTGGTGGAGGGGGGCTTGTTGCAG
GTGTTTCAGCCGTTTTGAAAGCGAATCAGCCCGGGCAATGGCGCGTTGTG
GGCTGTCTGCCTCAGAATTCTCCGGTGATGTTTGAATGTATGAAGACCGG
CCGAATATGTGCGGTTCCCTGCAAGGAAACGCTCTCAGATGGAAGTGCCG
GTCAAATAGAGCAAAATGCAATCACGTTCGAGGCTTGCTCTCACTTGGTT
GATGCATGGGCTATTGTGTCTGAAGAAGAAATCAGACTTGCGATGCGCGA
CGTTCTTGCGTTCGAGCACAAGCTGGTAGAAGGCTCAGCTGGCGTGGCTG
TCGCAGGTATGCGACGAGACTCCAAATGGCGAGACGCGAATGATTGCGTC
GCATCCGTTGTAATAGCCTGTGGCGGGAATGTAAGCGTTGATACAATTCT
TAAGGTAACAATGGGCACACCCGGATAG
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