Gchil3364.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3364.t1
Unique NameGchil3364.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:438988..439890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog121225.PHUM361870-PA
PFAMszf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K09228
Evalue3.67e-09
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38BZ9@33154|Opisthokonta,3BA9A@33208|Metazoa,3CT35@33213|Bilateria,4226W@6656|Arthropoda,3SR57@50557|Insecta,3EC0C@33342|Paraneoptera
DescriptionZinc finger protein
COG categoryS
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3364Gchil3364Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 438988..439890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3364.t1Gchil3364.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 438988..439890 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3364.t1.start1Gchil3364.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 438988..438990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3364.t1.CDS1Gchil3364.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 438988..439501 +
Gchil3364.t1.CDS2Gchil3364.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 439584..439594 +
Gchil3364.t1.CDS3Gchil3364.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 439678..439758 +
Gchil3364.t1.CDS4Gchil3364.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 439843..439890 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3364.t1.exon1Gchil3364.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 438988..439501 +
Gchil3364.t1.exon2Gchil3364.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 439584..439594 +
Gchil3364.t1.exon3Gchil3364.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 439678..439758 +
Gchil3364.t1.exon4Gchil3364.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 439843..439890 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3364.t1.intron1Gchil3364.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 439502..439583 +
Gchil3364.t1.intron2Gchil3364.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 439595..439677 +
Gchil3364.t1.intron3Gchil3364.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 439759..439842 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3364.t1.stop1Gchil3364.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 439888..439890 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3364.t1 ID=Gchil3364.t1|Name=Gchil3364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=218bp
MDLSNIVHGLKPKSERSGGSSNPSASQASSSDQRTGSSSLTQRPDDHRTT
AASSGNSSSREGASSSQTLSNQSASRPDPIPTPDGISRETILRCDKCSRT
FCSNQQFNQHLSVFHGRSKVASGQREANFLCAYCGKRFSSPSKRTLHINA
THMGLKPYHCKVCSKSFGYKGDLSKHMASHSGERPYSCYICGAKFARNFY
VKRHIETIHEKKGSSSM*
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spliced messenger RNA

>Gchil3364.t1 ID=Gchil3364.t1|Name=Gchil3364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000168_pilon:438988..439890+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTGTCGAACATCGTGCATGGCTTAAAGCCCAAAAGCGAGCGTAG
TGGTGGTTCATCTAATCCCAGTGCATCACAAGCATCATCTTCGGACCAAC
GAACTGGTTCGTCCAGCCTAACCCAAAGGCCCGACGACCATCGAACAACG
GCTGCCTCCTCAGGAAATAGCTCTTCGAGAGAAGGGGCATCGAGCTCTCA
AACCCTGTCGAACCAATCCGCTTCTCGACCTGATCCAATCCCAACACCAG
ATGGCATCTCGAGGGAAACTATTCTACGGTGCGACAAGTGCTCGAGGACT
TTCTGCTCCAACCAGCAATTCAATCAGCATTTGTCTGTGTTCCATGGGCG
TTCAAAAGTGGCATCAGGACAACGAGAAGCAAATTTCTTGTGTGCTTACT
GTGGAAAAAGGTTTTCCTCTCCTTCGAAACGGACCTTGCACATCAATGCA
ACTCACATGGGACTGAAACCCTATCACTGCAAAGTTTGTTCAAAGTCATT
TGGATACAAAGGAGATCTTTCTAAGCATATGGCATCCCATTCCGGAGAAA
GGCCTTATTCTTGTTACATTTGCGGTGCAAAGTTTGCGAGGAACTTCTAT
GTTAAGAGACATATTGAGACGATTCACGAGAAGAAGGGCTCTTCTTCAAT
GTAA
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protein sequence of Gchil3364.t1

>Gchil3364.t1 ID=Gchil3364.t1|Name=Gchil3364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=218bp
MDLSNIVHGLKPKSERSGGSSNPSASQASSSDQRTGSSSLTQRPDDHRTT
AASSGNSSSREGASSSQTLSNQSASRPDPIPTPDGISRETILRCDKCSRT
FCSNQQFNQHLSVFHGRSKVASGQREANFLCAYCGKRFSSPSKRTLHINA
THMGLKPYHCKVCSKSFGYKGDLSKHMASHSGERPYSCYICGAKFARNFY
VKRHIETIHEKKGSSSM*
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mRNA from alignment at tig00000168_pilon:438988..439890+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3364.t1 ID=Gchil3364.t1|Name=Gchil3364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000168_pilon:438988..439890+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTGTCGAACATCGTGCATGGCTTAAAGCCCAAAAGCGAGCGTAG
TGGTGGTTCATCTAATCCCAGTGCATCACAAGCATCATCTTCGGACCAAC
GAACTGGTTCGTCCAGCCTAACCCAAAGGCCCGACGACCATCGAACAACG
GCTGCCTCCTCAGGAAATAGCTCTTCGAGAGAAGGGGCATCGAGCTCTCA
AACCCTGTCGAACCAATCCGCTTCTCGACCTGATCCAATCCCAACACCAG
ATGGCATCTCGAGGGAAACTATTCTACGGTGCGACAAGTGCTCGAGGACT
TTCTGCTCCAACCAGCAATTCAATCAGCATTTGTCTGTGTTCCATGGGCG
TTCAAAAGTGGCATCAGGACAACGAGAAGCAAATTTCTTGTGTGCTTACT
GTGGAAAAAGGTTTTCCTCTCCTTCGAAACGGACCTTGCACATCAATGCA
ACTCACATGGGACTGAAACCCTATCACTGCAAAGTTTGTTCAAAGTCATT
TGGATACAAAGGAGGTAGGCTTGCAACATCCATCCGCCTCATCTTGATCC
CTCACTGACAACTCCAACCCTTTTTGGGAGGTTTTTCCCCTAATAGATCT
TTCTAAGGTTAGTAGCTGCCCTTTTCACACTGCTTTCATTCCGTTTCATG
TCTGCTGTCTCTGACTCCCTTGGGCCCCCGATGAACTCAGCATATGGCAT
CCCATTCCGGAGAAAGGCCTTATTCTTGTTACATTTGCGGTGCAAAGTTT
GCGAGGAACTTCTATGTTAAGGTATGTAACATCAGAAACTCTACAATCAA
ATTGGGTGATGAAGAGAAGCTGCTGACGAAGATTCATATTTTAATTACTT
CGCAGAGACATATTGAGACGATTCACGAGAAGAAGGGCTCTTCTTCAATG
TAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:438988..439890+

>Gchil3364.t1 ID=Gchil3364.t1|Name=Gchil3364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000168_pilon:438988..439890+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTGTCGAACATCGTGCATGGCTTAAAGCCCAAAAGCGAGCGTAG
TGGTGGTTCATCTAATCCCAGTGCATCACAAGCATCATCTTCGGACCAAC
GAACTGGTTCGTCCAGCCTAACCCAAAGGCCCGACGACCATCGAACAACG
GCTGCCTCCTCAGGAAATAGCTCTTCGAGAGAAGGGGCATCGAGCTCTCA
AACCCTGTCGAACCAATCCGCTTCTCGACCTGATCCAATCCCAACACCAG
ATGGCATCTCGAGGGAAACTATTCTACGGTGCGACAAGTGCTCGAGGACT
TTCTGCTCCAACCAGCAATTCAATCAGCATTTGTCTGTGTTCCATGGGCG
TTCAAAAGTGGCATCAGGACAACGAGAAGCAAATTTCTTGTGTGCTTACT
GTGGAAAAAGGTTTTCCTCTCCTTCGAAACGGACCTTGCACATCAATGCA
ACTCACATGGGACTGAAACCCTATCACTGCAAAGTTTGTTCAAAGTCATT
TGGATACAAAGGAGATCTTTCTAAGCATATGGCATCCCATTCCGGAGAAA
GGCCTTATTCTTGTTACATTTGCGGTGCAAAGTTTGCGAGGAACTTCTAT
GTTAAGAGACATATTGAGACGATTCACGAGAAGAAGGGCTCTTCTTCAAT
GTAA
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