Gchil3342.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3342.t1
Unique NameGchil3342.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:285233..286660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RAM6
PFAMsLdh_2
Max annot lvl2836|Bacillariophyta
Evalue5.05e-151
EggNOG OGsCOG2055@1|root,2QRW5@2759|Eukaryota,2XDGM@2836|Bacillariophyta
DescriptionMalate/L-lactate dehydrogenase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3342Gchil3342Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 285233..286660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3342.t1Gchil3342.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 285233..286660 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3342.t1.stop1Gchil3342.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 285233..285235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3342.t1.CDS1Gchil3342.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 285233..285630 -
Gchil3342.t1.CDS2Gchil3342.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 285718..286660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3342.t1.exon1Gchil3342.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 285233..285630 -
Gchil3342.t1.exon2Gchil3342.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 285718..286660 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3342.t1.intron1Gchil3342.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 285631..285717 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3342.t1.start1Gchil3342.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 286658..286660 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3342.t1 ID=Gchil3342.t1|Name=Gchil3342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp
MNHTVPPINMPSVVPESESLRAKLSSLAKRLSGDDAIIVNQLLEKWDQGN
LPSAKGDVAQATVKPNDAAPTIKYAKVEMPFLKQFMEDALVAAGVPSEEA
SVASEVLEWADLHAVTTHGIGRLKPIYIDRINSGILKPTAPFDIVNETET
TAVVDGHGGLGLLIGPKCMDICIEKAKKHGLAMVVARNSTHYGAAGYYVD
KAQKHGCIGITGTNARPSIAPTYGVQPMLGTNPLTVGMPSDDGFPFVLDC
ATSVNQRGKIEKYEREGKPTPPGQVVDRDGNVRTDTAQILKDLQTGYCSL
APLGGVGAEMGGYKGYGYATVVELLSSALQDGLNSPQLSGVNKETGEKIP
MLLGHFFIAIDVERFIPLQAFKANVGKFLRAMRDSEKDPKGPGRIYTAGE
LENEGSLECERAGGIQIPEPLMKDMKAIRELYSSIRAKYAKFSFEE*
back to top

spliced messenger RNA

>Gchil3342.t1 ID=Gchil3342.t1|Name=Gchil3342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000168_pilon:285233..286660- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCATACTGTGCCTCCAATAAATATGCCGTCCGTTGTCCCAGAATC
CGAATCTCTTCGCGCGAAGCTGTCATCGCTCGCCAAGCGTTTGTCGGGAG
ATGATGCCATTATTGTCAACCAGCTGTTGGAGAAGTGGGATCAAGGCAAT
CTCCCGTCTGCCAAGGGAGACGTTGCCCAGGCAACTGTGAAGCCGAATGA
TGCTGCACCCACGATTAAGTACGCCAAGGTTGAGATGCCCTTCCTGAAAC
AGTTTATGGAAGATGCGTTGGTAGCAGCGGGCGTTCCATCGGAGGAAGCT
TCTGTCGCGTCCGAGGTTCTGGAATGGGCTGATCTTCATGCTGTCACCAC
TCACGGCATTGGTCGCCTTAAACCGATTTACATCGATCGAATTAACAGCG
GCATTCTCAAGCCTACTGCCCCGTTTGACATTGTCAACGAGACTGAAACC
ACTGCTGTCGTTGACGGTCATGGTGGTCTCGGTCTCCTTATCGGTCCAAA
GTGCATGGATATTTGTATCGAAAAGGCAAAGAAGCACGGACTGGCAATGG
TCGTCGCAAGAAATAGCACTCATTACGGGGCCGCTGGGTATTACGTTGAC
AAGGCACAAAAGCATGGTTGTATTGGCATTACTGGCACCAATGCTCGCCC
TTCAATCGCTCCTACTTATGGTGTTCAACCTATGCTTGGCACCAACCCCT
TGACTGTTGGAATGCCAAGTGACGATGGATTTCCGTTTGTTTTGGACTGT
GCCACCTCAGTGAATCAGCGTGGTAAGATTGAAAAGTATGAACGAGAAGG
TAAACCGACACCACCAGGCCAGGTTGTTGATCGAGATGGAAATGTCAGAA
CAGATACTGCTCAGATTTTGAAGGACTTGCAAACTGGTTATTGCTCACTG
GCGCCTTTAGGTGGCGTCGGTGCTGAAATGGGGGGCTACAAGGGATACGG
ATATGCTACGGTTGTAGAGTTGTTGTCCTCTGCACTTCAAGATGGTTTGA
ACAGTCCGCAACTTAGCGGTGTCAATAAGGAAACAGGGGAGAAGATTCCC
ATGTTATTGGGGCATTTCTTCATTGCCATTGACGTGGAACGGTTTATACC
GCTGCAAGCATTCAAGGCGAACGTTGGGAAGTTCTTACGTGCAATGCGAG
ATTCTGAAAAAGATCCAAAAGGACCGGGTCGCATTTATACCGCTGGTGAG
CTGGAAAACGAAGGATCTTTGGAATGTGAAAGGGCTGGTGGAATTCAAAT
TCCGGAGCCTTTGATGAAGGACATGAAGGCTATTCGAGAGCTTTACTCCT
CCATTCGTGCTAAATATGCGAAGTTTAGCTTCGAGGAATAG
back to top

protein sequence of Gchil3342.t1

>Gchil3342.t1 ID=Gchil3342.t1|Name=Gchil3342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=447bp
MNHTVPPINMPSVVPESESLRAKLSSLAKRLSGDDAIIVNQLLEKWDQGN
LPSAKGDVAQATVKPNDAAPTIKYAKVEMPFLKQFMEDALVAAGVPSEEA
SVASEVLEWADLHAVTTHGIGRLKPIYIDRINSGILKPTAPFDIVNETET
TAVVDGHGGLGLLIGPKCMDICIEKAKKHGLAMVVARNSTHYGAAGYYVD
KAQKHGCIGITGTNARPSIAPTYGVQPMLGTNPLTVGMPSDDGFPFVLDC
ATSVNQRGKIEKYEREGKPTPPGQVVDRDGNVRTDTAQILKDLQTGYCSL
APLGGVGAEMGGYKGYGYATVVELLSSALQDGLNSPQLSGVNKETGEKIP
MLLGHFFIAIDVERFIPLQAFKANVGKFLRAMRDSEKDPKGPGRIYTAGE
LENEGSLECERAGGIQIPEPLMKDMKAIRELYSSIRAKYAKFSFEE*
back to top

mRNA from alignment at tig00000168_pilon:285233..286660-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3342.t1 ID=Gchil3342.t1|Name=Gchil3342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000168_pilon:285233..286660- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCATACTGTGCCTCCAATAAATATGCCGTCCGTTGTCCCAGAATC
CGAATCTCTTCGCGCGAAGCTGTCATCGCTCGCCAAGCGTTTGTCGGGAG
ATGATGCCATTATTGTCAACCAGCTGTTGGAGAAGTGGGATCAAGGCAAT
CTCCCGTCTGCCAAGGGAGACGTTGCCCAGGCAACTGTGAAGCCGAATGA
TGCTGCACCCACGATTAAGTACGCCAAGGTTGAGATGCCCTTCCTGAAAC
AGTTTATGGAAGATGCGTTGGTAGCAGCGGGCGTTCCATCGGAGGAAGCT
TCTGTCGCGTCCGAGGTTCTGGAATGGGCTGATCTTCATGCTGTCACCAC
TCACGGCATTGGTCGCCTTAAACCGATTTACATCGATCGAATTAACAGCG
GCATTCTCAAGCCTACTGCCCCGTTTGACATTGTCAACGAGACTGAAACC
ACTGCTGTCGTTGACGGTCATGGTGGTCTCGGTCTCCTTATCGGTCCAAA
GTGCATGGATATTTGTATCGAAAAGGCAAAGAAGCACGGACTGGCAATGG
TCGTCGCAAGAAATAGCACTCATTACGGGGCCGCTGGGTATTACGTTGAC
AAGGCACAAAAGCATGGTTGTATTGGCATTACTGGCACCAATGCTCGCCC
TTCAATCGCTCCTACTTATGGTGTTCAACCTATGCTTGGCACCAACCCCT
TGACTGTTGGAATGCCAAGTGACGATGGATTTCCGTTTGTTTTGGACTGT
GCCACCTCAGTGAATCAGCGTGGTAAGATTGAAAAGTATGAACGAGAAGG
TAAACCGACACCACCAGGCCAGGTTGTTGATCGAGATGGAAATGTCAGAA
CAGATACTGCTCAGATTTTGAAGGACTTGCAAACTGGTTATTGCTCACTG
GCGCCTTTAGGTGGCGTCGGTGCTGAAATGGGGGGCTACAAGGGTAAGTT
TAACAAATCTGCGCAAGTGGGTTGAAAACGACACTAACGATTTTAACTCA
AATGAAAACTTAATCTGCTCTGTAAAACAGGATACGGATATGCTACGGTT
GTAGAGTTGTTGTCCTCTGCACTTCAAGATGGTTTGAACAGTCCGCAACT
TAGCGGTGTCAATAAGGAAACAGGGGAGAAGATTCCCATGTTATTGGGGC
ATTTCTTCATTGCCATTGACGTGGAACGGTTTATACCGCTGCAAGCATTC
AAGGCGAACGTTGGGAAGTTCTTACGTGCAATGCGAGATTCTGAAAAAGA
TCCAAAAGGACCGGGTCGCATTTATACCGCTGGTGAGCTGGAAAACGAAG
GATCTTTGGAATGTGAAAGGGCTGGTGGAATTCAAATTCCGGAGCCTTTG
ATGAAGGACATGAAGGCTATTCGAGAGCTTTACTCCTCCATTCGTGCTAA
ATATGCGAAGTTTAGCTTCGAGGAATAG
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:285233..286660-

>Gchil3342.t1 ID=Gchil3342.t1|Name=Gchil3342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000168_pilon:285233..286660- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCATACTGTGCCTCCAATAAATATGCCGTCCGTTGTCCCAGAATC
CGAATCTCTTCGCGCGAAGCTGTCATCGCTCGCCAAGCGTTTGTCGGGAG
ATGATGCCATTATTGTCAACCAGCTGTTGGAGAAGTGGGATCAAGGCAAT
CTCCCGTCTGCCAAGGGAGACGTTGCCCAGGCAACTGTGAAGCCGAATGA
TGCTGCACCCACGATTAAGTACGCCAAGGTTGAGATGCCCTTCCTGAAAC
AGTTTATGGAAGATGCGTTGGTAGCAGCGGGCGTTCCATCGGAGGAAGCT
TCTGTCGCGTCCGAGGTTCTGGAATGGGCTGATCTTCATGCTGTCACCAC
TCACGGCATTGGTCGCCTTAAACCGATTTACATCGATCGAATTAACAGCG
GCATTCTCAAGCCTACTGCCCCGTTTGACATTGTCAACGAGACTGAAACC
ACTGCTGTCGTTGACGGTCATGGTGGTCTCGGTCTCCTTATCGGTCCAAA
GTGCATGGATATTTGTATCGAAAAGGCAAAGAAGCACGGACTGGCAATGG
TCGTCGCAAGAAATAGCACTCATTACGGGGCCGCTGGGTATTACGTTGAC
AAGGCACAAAAGCATGGTTGTATTGGCATTACTGGCACCAATGCTCGCCC
TTCAATCGCTCCTACTTATGGTGTTCAACCTATGCTTGGCACCAACCCCT
TGACTGTTGGAATGCCAAGTGACGATGGATTTCCGTTTGTTTTGGACTGT
GCCACCTCAGTGAATCAGCGTGGTAAGATTGAAAAGTATGAACGAGAAGG
TAAACCGACACCACCAGGCCAGGTTGTTGATCGAGATGGAAATGTCAGAA
CAGATACTGCTCAGATTTTGAAGGACTTGCAAACTGGTTATTGCTCACTG
GCGCCTTTAGGTGGCGTCGGTGCTGAAATGGGGGGCTACAAGGGATACGG
ATATGCTACGGTTGTAGAGTTGTTGTCCTCTGCACTTCAAGATGGTTTGA
ACAGTCCGCAACTTAGCGGTGTCAATAAGGAAACAGGGGAGAAGATTCCC
ATGTTATTGGGGCATTTCTTCATTGCCATTGACGTGGAACGGTTTATACC
GCTGCAAGCATTCAAGGCGAACGTTGGGAAGTTCTTACGTGCAATGCGAG
ATTCTGAAAAAGATCCAAAAGGACCGGGTCGCATTTATACCGCTGGTGAG
CTGGAAAACGAAGGATCTTTGGAATGTGAAAGGGCTGGTGGAATTCAAAT
TCCGGAGCCTTTGATGAAGGACATGAAGGCTATTCGAGAGCTTTACTCCT
CCATTCGTGCTAAATATGCGAAGTTTAGCTTCGAGGAATAG
back to top