Gchil3331.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3331.t1
Unique NameGchil3331.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:206626..208233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313612.L8106_17024
Max annot lvl1117|Cyanobacteria
Evalue1.4e-10
EggNOG OGsCOG3319@1|root,COG3319@2|Bacteria,1G4RE@1117|Cyanobacteria,1H9Z4@1150|Oscillatoriales
Descriptionamino acid activation for nonribosomal peptide biosynthetic process
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3331Gchil3331Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 206626..208233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3331.t1Gchil3331.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 206626..208233 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3331.t1.start1Gchil3331.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 206626..206628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3331.t1.CDS1Gchil3331.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 206626..206932 +
Gchil3331.t1.CDS2Gchil3331.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 207054..207969 +
Gchil3331.t1.CDS3Gchil3331.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 208113..208233 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3331.t1.exon1Gchil3331.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 206626..206932 +
Gchil3331.t1.exon2Gchil3331.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 207054..207969 +
Gchil3331.t1.exon3Gchil3331.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 208113..208233 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3331.t1.intron1Gchil3331.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 206933..207053 +
Gchil3331.t1.intron2Gchil3331.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 207970..208112 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3331.t1.stop1Gchil3331.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 208231..208233 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3331.t1 ID=Gchil3331.t1|Name=Gchil3331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MGGAQSGEEVSEVVYDGDQPSEPIQEGDHGCHEEMSEEMKALLDANTYMP
GDHAKYPYFLIQLAEREEREYDGQLVSDAIVEYIHTHHVTHIFAQTHGWN
TPPDKAVAVPFTEFMGGMQDDRAMPESSDEFRPIFIAFIWPAVPIDFIKT
DDALTKAELLASSERELEGESEIAHACEAAKRAIDNEDPDDDDLKESMRA
LVSQIRDDDDEDDEDPENVIEREREVAREAEYQVTSRRVEDLGDLFKVVM
RPVETFVFGRLMKRGQRVGEVMGAVIGKLMKASEKRMKVCLMANSLGAHV
LVGLLNRSHVLPYKLHTVFFVQGAIAREYFEDGGKFGHVKRIVAGPVVVS
FSEHDLMLRNVFGWFHGIAIGFTGAPTGMTCRMKHISEIDDDPYNFECGE
WNNIDGSEFINEGSPVAGGHGDFKEDETTSLYWSAIKEEVDDSTYDM*
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spliced messenger RNA

>Gchil3331.t1 ID=Gchil3331.t1|Name=Gchil3331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000168_pilon:206626..208233+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGTGCACAGAGCGGAGAGGAAGTGTCTGAAGTCGTTTACGATGG
TGACCAACCTTCTGAACCGATACAGGAAGGAGATCATGGATGTCATGAAG
AGATGTCTGAAGAAATGAAGGCTCTTTTGGATGCCAATACATACATGCCA
GGTGATCATGCTAAGTATCCATATTTTCTTATTCAACTTGCTGAGAGGGA
AGAACGTGAGTATGATGGGCAGTTGGTATCCGATGCTATCGTCGAGTATA
TTCACACCCATCACGTCACTCACATATTCGCACAAACGCATGGATGGAAC
ACACCTCCGGATAAGGCCGTGGCTGTGCCATTTACAGAATTCATGGGAGG
CATGCAGGATGATCGAGCTATGCCCGAATCATCAGACGAATTCCGCCCCA
TTTTCATTGCCTTCATTTGGCCGGCTGTACCGATCGATTTCATTAAGACC
GATGATGCCCTTACGAAAGCCGAATTACTCGCCAGTAGTGAACGTGAGCT
GGAAGGGGAATCTGAAATTGCTCATGCGTGTGAGGCTGCGAAACGCGCCA
TAGACAATGAAGACCCTGATGATGACGATCTGAAAGAATCCATGCGTGCT
TTGGTGAGTCAGATTCGtgatgatgacgatgaagatgatgaagaCCCAGA
AAATGTTATTGAGAGAGAACGAGAAGTGGCACGAGAGGCAGAATATCAAG
TGACCTCAAGAAGGGTTGAAGACTTAGGTGACTTGTTCAAAGTGGTGATG
CGTCCAGTGGAAACTTTTGTGTTCGGGAGACTTATGAAGCGAGGACAGCG
TGTTGGCGAGGTAATGGGTGCCGTGATCGGAAAGCTCATGAAAGCGTCCG
AGAAAAGGATGAAAGTTTGCCTCATGGCGAATTCTCTGGGTGCCCATGTC
TTAGTAGGATTATTGAACAGATCTCACGTTCTTCCGTACAAGTTGCATAC
AGTGTTCTTCGTACAGGGAGCCATTGCTCGTGAATATTTCGAGGATGGTG
GGAAGTTCGGTCACGTCAAAAGAATTGTTGCTGGGCCTGTTGTGGTTTCA
TTCAGCGAACATGACCTGATGCTCCGAAATGTTTTCGGTTGGTTCCATGG
TATTGCCATCGGCTTTACAGGTGCTCCTACTGGAATGACGTGCCGGATGA
AGCACATAAGCGAAATCGATGATGACCCGTACAACTTTGAATGTGGAGAG
TGGAACAACATTGACGGCTCAGAATTCATCAATGAGGGAAGCCCAGTCGC
CGGTGGGCACGGTGATTTCAAAGAGGACGAAACCACAAGCTTGTATTGGT
CTGCCATCAAAGAGGAAGTGGATGATTCGACGTACGACATGTAA
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protein sequence of Gchil3331.t1

>Gchil3331.t1 ID=Gchil3331.t1|Name=Gchil3331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MGGAQSGEEVSEVVYDGDQPSEPIQEGDHGCHEEMSEEMKALLDANTYMP
GDHAKYPYFLIQLAEREEREYDGQLVSDAIVEYIHTHHVTHIFAQTHGWN
TPPDKAVAVPFTEFMGGMQDDRAMPESSDEFRPIFIAFIWPAVPIDFIKT
DDALTKAELLASSERELEGESEIAHACEAAKRAIDNEDPDDDDLKESMRA
LVSQIRDDDDEDDEDPENVIEREREVAREAEYQVTSRRVEDLGDLFKVVM
RPVETFVFGRLMKRGQRVGEVMGAVIGKLMKASEKRMKVCLMANSLGAHV
LVGLLNRSHVLPYKLHTVFFVQGAIAREYFEDGGKFGHVKRIVAGPVVVS
FSEHDLMLRNVFGWFHGIAIGFTGAPTGMTCRMKHISEIDDDPYNFECGE
WNNIDGSEFINEGSPVAGGHGDFKEDETTSLYWSAIKEEVDDSTYDM*
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mRNA from alignment at tig00000168_pilon:206626..208233+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3331.t1 ID=Gchil3331.t1|Name=Gchil3331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000168_pilon:206626..208233+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGGTGCACAGAGCGGAGAGGAAGTGTCTGAAGTCGTTTACGATGG
TGACCAACCTTCTGAACCGATACAGGAAGGAGATCATGGATGTCATGAAG
AGATGTCTGAAGAAATGAAGGCTCTTTTGGATGCCAATACATACATGCCA
GGTGATCATGCTAAGTATCCATATTTTCTTATTCAACTTGCTGAGAGGGA
AGAACGTGAGTATGATGGGCAGTTGGTATCCGATGCTATCGTCGAGTATA
TTCACACCCATCACGTCACTCACATATTCGCACAAACGCATGGATGGAAC
ACACCTCGTGAGTTGAACTACATCCGGCGGTCTAGCTCCTTGTCTTTGAA
TATTACCATTGATCGCGTTAGCTAACCGTTTCTGTTTTTCGAATATTTCA
ATTATATCAATTTCCTGCATTTCTCCAGCGGATAAGGCCGTGGCTGTGCC
ATTTACAGAATTCATGGGAGGCATGCAGGATGATCGAGCTATGCCCGAAT
CATCAGACGAATTCCGCCCCATTTTCATTGCCTTCATTTGGCCGGCTGTA
CCGATCGATTTCATTAAGACCGATGATGCCCTTACGAAAGCCGAATTACT
CGCCAGTAGTGAACGTGAGCTGGAAGGGGAATCTGAAATTGCTCATGCGT
GTGAGGCTGCGAAACGCGCCATAGACAATGAAGACCCTGATGATGACGAT
CTGAAAGAATCCATGCGTGCTTTGGTGAGTCAGATTCGtgatgatgacga
tgaagatgatgaagaCCCAGAAAATGTTATTGAGAGAGAACGAGAAGTGG
CACGAGAGGCAGAATATCAAGTGACCTCAAGAAGGGTTGAAGACTTAGGT
GACTTGTTCAAAGTGGTGATGCGTCCAGTGGAAACTTTTGTGTTCGGGAG
ACTTATGAAGCGAGGACAGCGTGTTGGCGAGGTAATGGGTGCCGTGATCG
GAAAGCTCATGAAAGCGTCCGAGAAAAGGATGAAAGTTTGCCTCATGGCG
AATTCTCTGGGTGCCCATGTCTTAGTAGGATTATTGAACAGATCTCACGT
TCTTCCGTACAAGTTGCATACAGTGTTCTTCGTACAGGGAGCCATTGCTC
GTGAATATTTCGAGGATGGTGGGAAGTTCGGTCACGTCAAAAGAATTGTT
GCTGGGCCTGTTGTGGTTTCATTCAGCGAACATGACCTGATGCTCCGAAA
TGTTTTCGGTTGGTTCCATGGTATTGCCATCGGCTTTACAGGTGCTCCTA
CTGGAATGACGTGCCGGATGAAGCACATAAGCGAAATCGATGATGACCCG
TACAACTTTGAATGTGGAGAGTGGAACAACATTGACGGCTCAGAGTACGT
TCTTATGGTTTTCTTTCTTTTAGCTTTCTTGAGTTCCTAAGCATGTGAGA
CGAAGACATACTAACCCTCATCCTACAATATGGCGCGATGCTCGAAATTT
TACTTCGTGTCTTTCCTTTATCTGGTTCAACTATCAGATTCATCAATGAG
GGAAGCCCAGTCGCCGGTGGGCACGGTGATTTCAAAGAGGACGAAACCAC
AAGCTTGTATTGGTCTGCCATCAAAGAGGAAGTGGATGATTCGACGTACG
ACATGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:206626..208233+

>Gchil3331.t1 ID=Gchil3331.t1|Name=Gchil3331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000168_pilon:206626..208233+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGGTGCACAGAGCGGAGAGGAAGTGTCTGAAGTCGTTTACGATGG
TGACCAACCTTCTGAACCGATACAGGAAGGAGATCATGGATGTCATGAAG
AGATGTCTGAAGAAATGAAGGCTCTTTTGGATGCCAATACATACATGCCA
GGTGATCATGCTAAGTATCCATATTTTCTTATTCAACTTGCTGAGAGGGA
AGAACGTGAGTATGATGGGCAGTTGGTATCCGATGCTATCGTCGAGTATA
TTCACACCCATCACGTCACTCACATATTCGCACAAACGCATGGATGGAAC
ACACCTCCGGATAAGGCCGTGGCTGTGCCATTTACAGAATTCATGGGAGG
CATGCAGGATGATCGAGCTATGCCCGAATCATCAGACGAATTCCGCCCCA
TTTTCATTGCCTTCATTTGGCCGGCTGTACCGATCGATTTCATTAAGACC
GATGATGCCCTTACGAAAGCCGAATTACTCGCCAGTAGTGAACGTGAGCT
GGAAGGGGAATCTGAAATTGCTCATGCGTGTGAGGCTGCGAAACGCGCCA
TAGACAATGAAGACCCTGATGATGACGATCTGAAAGAATCCATGCGTGCT
TTGGTGAGTCAGATTCGtgatgatgacgatgaagatgatgaagaCCCAGA
AAATGTTATTGAGAGAGAACGAGAAGTGGCACGAGAGGCAGAATATCAAG
TGACCTCAAGAAGGGTTGAAGACTTAGGTGACTTGTTCAAAGTGGTGATG
CGTCCAGTGGAAACTTTTGTGTTCGGGAGACTTATGAAGCGAGGACAGCG
TGTTGGCGAGGTAATGGGTGCCGTGATCGGAAAGCTCATGAAAGCGTCCG
AGAAAAGGATGAAAGTTTGCCTCATGGCGAATTCTCTGGGTGCCCATGTC
TTAGTAGGATTATTGAACAGATCTCACGTTCTTCCGTACAAGTTGCATAC
AGTGTTCTTCGTACAGGGAGCCATTGCTCGTGAATATTTCGAGGATGGTG
GGAAGTTCGGTCACGTCAAAAGAATTGTTGCTGGGCCTGTTGTGGTTTCA
TTCAGCGAACATGACCTGATGCTCCGAAATGTTTTCGGTTGGTTCCATGG
TATTGCCATCGGCTTTACAGGTGCTCCTACTGGAATGACGTGCCGGATGA
AGCACATAAGCGAAATCGATGATGACCCGTACAACTTTGAATGTGGAGAG
TGGAACAACATTGACGGCTCAGAATTCATCAATGAGGGAAGCCCAGTCGC
CGGTGGGCACGGTGATTTCAAAGAGGACGAAACCACAAGCTTGTATTGGT
CTGCCATCAAAGAGGAAGTGGATGATTCGACGTACGACATGTAA
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