Gchil3324.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3324.t1
Unique NameGchil3324.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:152982..153251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37682.EMT05250
PFAMsNB-ARC
Max annot lvl35493|Streptophyta
Evalue1.81e-06
EggNOG OGs2CMJU@1|root,2QQKK@2759|Eukaryota,37SXC@33090|Viridiplantae,3GCHR@35493|Streptophyta,3KRTG@4447|Liliopsida,3I4BT@38820|Poales
DescriptionATPases associated with a variety of cellular activities
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3324Gchil3324Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 152982..153251 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3324.t1.start1Gchil3324.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 152982..152984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3324.t1.CDS1Gchil3324.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 152982..153251 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3324.t1.exon1Gchil3324.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 152982..153251 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3324.t1.stop1Gchil3324.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 153249..153251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3324.t1Gchil3324.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 152982..153251 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3324.t1 ID=Gchil3324.t1|Name=Gchil3324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=90bp
MEKAYFSSHMSANMCTEQEFERRRRMPHAIPEKTREAVVGYDPYFVCNND
AVGLKGVLTDIKILISLREMCYGDGNDRVASEFKVSEAT*
back to top

spliced messenger RNA

>Gchil3324.t1 ID=Gchil3324.t1|Name=Gchil3324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp|location=Sequence derived from alignment at tig00000168_pilon:152982..153251+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGGCCTACTTCTCTTCGCATATGAGCGCGAACATGTGCACAGA
ACAGGAATTTGAGAGGCGTCGCCGGATGCCGCATGCTATTCCCGAGAAAA
CTCGTGAGGCTGTTGTTGGCTACGATCCGTACTTTGTTTGCAACAACGAC
GCGGTTGGATTGAAAGGTGTACTCACTGACATTAAGATTTTAATTTCTTT
GCGTGAGATGTGCTATGGTGATGGTAACGATCGTGTCGCAAGCGAGTTCA
AGGTGTCAGAGGCAACATAG
back to top

protein sequence of Gchil3324.t1

>Gchil3324.t1 ID=Gchil3324.t1|Name=Gchil3324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=90bp
MEKAYFSSHMSANMCTEQEFERRRRMPHAIPEKTREAVVGYDPYFVCNND
AVGLKGVLTDIKILISLREMCYGDGNDRVASEFKVSEAT*
back to top

mRNA from alignment at tig00000168_pilon:152982..153251+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3324.t1 ID=Gchil3324.t1|Name=Gchil3324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp|location=Sequence derived from alignment at tig00000168_pilon:152982..153251+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAAGGCCTACTTCTCTTCGCATATGAGCGCGAACATGTGCACAGA
ACAGGAATTTGAGAGGCGTCGCCGGATGCCGCATGCTATTCCCGAGAAAA
CTCGTGAGGCTGTTGTTGGCTACGATCCGTACTTTGTTTGCAACAACGAC
GCGGTTGGATTGAAAGGTGTACTCACTGACATTAAGATTTTAATTTCTTT
GCGTGAGATGTGCTATGGTGATGGTAACGATCGTGTCGCAAGCGAGTTCA
AGGTGTCAGAGGCAACATAG
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:152982..153251+

>Gchil3324.t1 ID=Gchil3324.t1|Name=Gchil3324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=270bp|location=Sequence derived from alignment at tig00000168_pilon:152982..153251+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAAGGCCTACTTCTCTTCGCATATGAGCGCGAACATGTGCACAGA
ACAGGAATTTGAGAGGCGTCGCCGGATGCCGCATGCTATTCCCGAGAAAA
CTCGTGAGGCTGTTGTTGGCTACGATCCGTACTTTGTTTGCAACAACGAC
GCGGTTGGATTGAAAGGTGTACTCACTGACATTAAGATTTTAATTTCTTT
GCGTGAGATGTGCTATGGTGATGGTAACGATCGTGTCGCAAGCGAGTTCA
AGGTGTCAGAGGCAACATAG
back to top