Gchil3320.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3320.t1
Unique NameGchil3320.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:129821..130308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_05403T0
Preferred nameRPL31B
PFAMsRibosomal_L31e
Max annot lvl4751|Fungi
KEGG koko:K02910
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006450,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue7.24e-46
EggNOG OGsCOG2097@1|root,KOG0893@2759|Eukaryota,3A3JD@33154|Opisthokonta,3P4B8@4751|Fungi
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3320Gchil3320Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 129821..130308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3320.t1Gchil3320.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 129821..130308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3320.t1.CDS1Gchil3320.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 129821..129823 +
Gchil3320.t1.CDS2Gchil3320.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 129955..130308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3320.t1.exon1Gchil3320.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 129821..129823 +
Gchil3320.t1.exon2Gchil3320.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 129955..130308 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3320.t1.start1Gchil3320.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 129821..129823 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3320.t1.intron1Gchil3320.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 129824..129954 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3320.t1.stop1Gchil3320.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 130306..130308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3320.t1 ID=Gchil3320.t1|Name=Gchil3320.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=119bp
MVKDRKPRGSEVVTRDYTIHLHKRLYRYGFKRKAPRAIKVIREFATRTMG
TSDVRVDPKLNKEIWRTGVRNVPYRIRVRLSRKRNDDEDAKEPLYTLASF
VPVSNPHCKGLQTTTIEE*
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spliced messenger RNA

>Gchil3320.t1 ID=Gchil3320.t1|Name=Gchil3320.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000168_pilon:129821..130308+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAAAGACCGAAAGCCACGCGGATCGGAGGTGGTCACCCGCGACTA
CACCATCCACTTGCACAAGCGACTATACCGATATGGTTTCAAGAGGAAAG
CCCCTCGTGCAATCAAAGTGATTCGCGAGTTCGCCACTAGGACTATGGGA
ACATCTGATGTGCGCGTCGATCCGAAGCTCAACAAAGAGATCTGGAGGAC
GGGTGTCCGCAACGTTCCATACCGTATTCGTGTTCGCCTGTCCCGAAAGC
GTAACGACGATGAAGATGCGAAGGAACCTCTTTACACCCTTGCTTCTTTC
GTTCCTGTTTCCAACCCCCATTGCAAGGGATTGCAGACCACTACTATCGA
GGAGTAA
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protein sequence of Gchil3320.t1

>Gchil3320.t1 ID=Gchil3320.t1|Name=Gchil3320.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=119bp
MVKDRKPRGSEVVTRDYTIHLHKRLYRYGFKRKAPRAIKVIREFATRTMG
TSDVRVDPKLNKEIWRTGVRNVPYRIRVRLSRKRNDDEDAKEPLYTLASF
VPVSNPHCKGLQTTTIEE*
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mRNA from alignment at tig00000168_pilon:129821..130308+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3320.t1 ID=Gchil3320.t1|Name=Gchil3320.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=488bp|location=Sequence derived from alignment at tig00000168_pilon:129821..130308+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGTCCCGGCGATCGTGATCCCCGAAATATTCTTCCAGCGCGATT
GATGCAGACGAAGGTTTCGTTCCCATCTGCGATCTTATGAGACAACGGCA
CGTTCTAACAACGAACATCCGTCACTAAACCCAGGTTAAAGACCGAAAGC
CACGCGGATCGGAGGTGGTCACCCGCGACTACACCATCCACTTGCACAAG
CGACTATACCGATATGGTTTCAAGAGGAAAGCCCCTCGTGCAATCAAAGT
GATTCGCGAGTTCGCCACTAGGACTATGGGAACATCTGATGTGCGCGTCG
ATCCGAAGCTCAACAAAGAGATCTGGAGGACGGGTGTCCGCAACGTTCCA
TACCGTATTCGTGTTCGCCTGTCCCGAAAGCGTAACGACGATGAAGATGC
GAAGGAACCTCTTTACACCCTTGCTTCTTTCGTTCCTGTTTCCAACCCCC
ATTGCAAGGGATTGCAGACCACTACTATCGAGGAGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:129821..130308+

>Gchil3320.t1 ID=Gchil3320.t1|Name=Gchil3320.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000168_pilon:129821..130308+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTAAAGACCGAAAGCCACGCGGATCGGAGGTGGTCACCCGCGACTA
CACCATCCACTTGCACAAGCGACTATACCGATATGGTTTCAAGAGGAAAG
CCCCTCGTGCAATCAAAGTGATTCGCGAGTTCGCCACTAGGACTATGGGA
ACATCTGATGTGCGCGTCGATCCGAAGCTCAACAAAGAGATCTGGAGGAC
GGGTGTCCGCAACGTTCCATACCGTATTCGTGTTCGCCTGTCCCGAAAGC
GTAACGACGATGAAGATGCGAAGGAACCTCTTTACACCCTTGCTTCTTTC
GTTCCTGTTTCCAACCCCCATTGCAAGGGATTGCAGACCACTACTATCGA
GGAGTAA
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