Gchil3319.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3319.t1
Unique NameGchil3319.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:128510..129238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47332
PFAMsPolyketide_cyc
Max annot lvl2759|Eukaryota
Evalue1.99e-29
EggNOG OGs2CXIA@1|root,2RXSU@2759|Eukaryota
DescriptionPolyketide cyclase / dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3319Gchil3319Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 128510..129238 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3319.t1.stop1Gchil3319.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 128510..128512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3319.t1.CDS1Gchil3319.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 128510..129238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3319.t1.exon1Gchil3319.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 128510..129238 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3319.t1.start1Gchil3319.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 129236..129238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3319.t1Gchil3319.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 128510..129238 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3319.t1 ID=Gchil3319.t1|Name=Gchil3319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp
MSAARNTAAFASSTIYISQPPRFGSGICHTSNRLVLHRVSRRPYPAVYCS
ASDTSTKAVKILEKQVRVNSDLPGDKTNNIFVSIKAENIGGRRRRVSGTV
EVETPLERVWKVITAYDKIHLYMPNILTSNLERRGEAIYLEQTGIISRKL
SLSSRMLLRVSEDISQRSVTFSRVESREFPEFEGRYFLKEGQDHVIVEYD
LVAQPFALFPMWMVERKTVKEIPKMLAAIREEALLGRHIPIA*
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spliced messenger RNA

>Gchil3319.t1 ID=Gchil3319.t1|Name=Gchil3319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000168_pilon:128510..129238- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGGCACGCAATACCGCAGCCTTCGCTTCTTCCACTATCTACAT
CTCCCAACCACCACGGTTTGGCAGTGGTATTTGCCACACATCTAACCGTC
TAGTTCTGCACCGAGTATCACGTCGACCATACCCCGCAGTTTACTGCTCT
GCGAGCGACACCTCAACCAAAGCAGTTAAAATCCTCGAAAAGCAAGTGCG
CGTCAATTCTGATCTACCCGGAGACAAGACAAACAATATATTTGTTTCTA
TAAAGGCAGAGAACATTGGAGGTCGTCGTCGTCGTGTCTCGGGCACAGTT
GAAGTTGAAACGCCTCTGGAAAGAGTATGGAAAGTGATTACTGCCTACGA
TAAGATTCATCTCTACATGCCAAACATATTAACAAGCAATCTCGAAAGAC
GTGGGGAGGCTATATATCTTGAGCAAACTGGAATTATTTCTCGGAAACTT
TCTCTTTCATCAAGGATGTTGCTTCGGGTCTCGGAGGACATTTCACAAAG
AAGCGTTACTTTCTCTCGCGTCGAAAGCCGCGAGTTTCCAGAATTTGAAG
GTCGCTATTTTCTCAAAGAAGGTCAAGACCATGTCATTGTCGAGTATGAT
CTTGTCGCACAGCCGTTTGCCCTTTTTCCCATGTGGATGGTCGAACGGAA
GACTGTGAAGGAAATTCCGAAGATGCTAGCTGCGATTCGCGAAGAAGCTC
TCCTCGGTCGACACATCCCCATCGCATAG
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protein sequence of Gchil3319.t1

>Gchil3319.t1 ID=Gchil3319.t1|Name=Gchil3319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=243bp
MSAARNTAAFASSTIYISQPPRFGSGICHTSNRLVLHRVSRRPYPAVYCS
ASDTSTKAVKILEKQVRVNSDLPGDKTNNIFVSIKAENIGGRRRRVSGTV
EVETPLERVWKVITAYDKIHLYMPNILTSNLERRGEAIYLEQTGIISRKL
SLSSRMLLRVSEDISQRSVTFSRVESREFPEFEGRYFLKEGQDHVIVEYD
LVAQPFALFPMWMVERKTVKEIPKMLAAIREEALLGRHIPIA*
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mRNA from alignment at tig00000168_pilon:128510..129238-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3319.t1 ID=Gchil3319.t1|Name=Gchil3319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000168_pilon:128510..129238- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGGCACGCAATACCGCAGCCTTCGCTTCTTCCACTATCTACAT
CTCCCAACCACCACGGTTTGGCAGTGGTATTTGCCACACATCTAACCGTC
TAGTTCTGCACCGAGTATCACGTCGACCATACCCCGCAGTTTACTGCTCT
GCGAGCGACACCTCAACCAAAGCAGTTAAAATCCTCGAAAAGCAAGTGCG
CGTCAATTCTGATCTACCCGGAGACAAGACAAACAATATATTTGTTTCTA
TAAAGGCAGAGAACATTGGAGGTCGTCGTCGTCGTGTCTCGGGCACAGTT
GAAGTTGAAACGCCTCTGGAAAGAGTATGGAAAGTGATTACTGCCTACGA
TAAGATTCATCTCTACATGCCAAACATATTAACAAGCAATCTCGAAAGAC
GTGGGGAGGCTATATATCTTGAGCAAACTGGAATTATTTCTCGGAAACTT
TCTCTTTCATCAAGGATGTTGCTTCGGGTCTCGGAGGACATTTCACAAAG
AAGCGTTACTTTCTCTCGCGTCGAAAGCCGCGAGTTTCCAGAATTTGAAG
GTCGCTATTTTCTCAAAGAAGGTCAAGACCATGTCATTGTCGAGTATGAT
CTTGTCGCACAGCCGTTTGCCCTTTTTCCCATGTGGATGGTCGAACGGAA
GACTGTGAAGGAAATTCCGAAGATGCTAGCTGCGATTCGCGAAGAAGCTC
TCCTCGGTCGACACATCCCCATCGCATAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:128510..129238-

>Gchil3319.t1 ID=Gchil3319.t1|Name=Gchil3319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000168_pilon:128510..129238- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGGCACGCAATACCGCAGCCTTCGCTTCTTCCACTATCTACAT
CTCCCAACCACCACGGTTTGGCAGTGGTATTTGCCACACATCTAACCGTC
TAGTTCTGCACCGAGTATCACGTCGACCATACCCCGCAGTTTACTGCTCT
GCGAGCGACACCTCAACCAAAGCAGTTAAAATCCTCGAAAAGCAAGTGCG
CGTCAATTCTGATCTACCCGGAGACAAGACAAACAATATATTTGTTTCTA
TAAAGGCAGAGAACATTGGAGGTCGTCGTCGTCGTGTCTCGGGCACAGTT
GAAGTTGAAACGCCTCTGGAAAGAGTATGGAAAGTGATTACTGCCTACGA
TAAGATTCATCTCTACATGCCAAACATATTAACAAGCAATCTCGAAAGAC
GTGGGGAGGCTATATATCTTGAGCAAACTGGAATTATTTCTCGGAAACTT
TCTCTTTCATCAAGGATGTTGCTTCGGGTCTCGGAGGACATTTCACAAAG
AAGCGTTACTTTCTCTCGCGTCGAAAGCCGCGAGTTTCCAGAATTTGAAG
GTCGCTATTTTCTCAAAGAAGGTCAAGACCATGTCATTGTCGAGTATGAT
CTTGTCGCACAGCCGTTTGCCCTTTTTCCCATGTGGATGGTCGAACGGAA
GACTGTGAAGGAAATTCCGAAGATGCTAGCTGCGATTCGCGAAGAAGCTC
TCCTCGGTCGACACATCCCCATCGCATAG
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