Gchil3315.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3315.t1
Unique NameGchil3315.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:121318..122052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog110662.Syncc9605_0447
PFAMsPhycobilisome
Max annot lvl1117|Cyanobacteria
Evalue1.89e-15
EggNOG OGs2C021@1|root,2ZCG9@2|Bacteria,1G50B@1117|Cyanobacteria,1H05F@1129|Synechococcus
DescriptionPhycobilisome protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3315Gchil3315Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 121318..122052 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3315.t1.start1Gchil3315.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 121318..121320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3315.t1.CDS1Gchil3315.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 121318..122052 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3315.t1.exon1Gchil3315.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 121318..122052 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3315.t1.stop1Gchil3315.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 122050..122052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3315.t1Gchil3315.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 121318..122052 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3315.t1 ID=Gchil3315.t1|Name=Gchil3315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MAAYSITAFALSPSPLVRSLRPSNNVAYCRSSSSKRSVQYTAQLPRSAAP
ATPPVATTSVSPRAKQLIEQQIQNPIFDPRLLDNSFGPMFSDLQAQSPPA
FVRSSHVPDTTSLAHRFAIDTIAEHSEEAIEAARAYILRVYPRIDQPGGA
LWPSQRAVACWRDLSAFARVAAYLAICENGLSTRGMHIMQQVYYEMNVPL
DAVRTGVHCIREQLADRAAYNNDSEASKIVRTAFDQLLGYLSTF*
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spliced messenger RNA

>Gchil3315.t1 ID=Gchil3315.t1|Name=Gchil3315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000168_pilon:121318..122052+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTTACTCCATCACCGCCTTCGCTCTTTCACCTTCGCCTCTTGT
TCGCTCGCTGCGGCCGTCGAACAACGTCGCATACTGCCGCAGCTCCAGCT
CCAAAAGAAGCGTACAGTATACTGCCCAATTGCCGCGCAGCGCGGCTCCA
GCAACTCCGCCCGTTGCTACAACATCCGTCTCGCCGAGAGCTAAGCAATT
AATCGAACAACAGATACAAAACCCAATATTCGATCCACGCCTTCTGGACA
ATTCCTTTGGCCCCATGTTTTCCGACTTGCAGGCTCAATCCCCGCCAGCT
TTTGTGCGCTCTTCGCACGTCCCAGATACCACGTCACTAGCCCACCGCTT
CGCAATTGACACCATCGCCGAACACTCGGAGGAAGCCATCGAAGCAGCGC
GCGCCTATATATTGCGCGTCTATCCGCGCATCGATCAGCCGGGTGGAGCT
CTCTGGCCATCTCAGAGAGCCGTCGCTTGTTGGCGCGATCTTTCCGCCTT
TGCCCGTGTAGCAGCATACTTGGCAATTTGTGAAAATGGTCTGTCCACTC
GCGGCATGCACATCATGCAGCAGGTATATTATGAGATGAATGTCCCTTTG
GATGCGGTACGAACCGGTGTGCATTGTATTCGGGAACAACTTGCTGACCG
TGCCGCGTACAACAATGATTCAGAGGCCTCAAAAATTGTGCGAACTGCCT
TTGACCAGTTACTCGGCTACCTCTCTACTTTCTAA
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protein sequence of Gchil3315.t1

>Gchil3315.t1 ID=Gchil3315.t1|Name=Gchil3315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MAAYSITAFALSPSPLVRSLRPSNNVAYCRSSSSKRSVQYTAQLPRSAAP
ATPPVATTSVSPRAKQLIEQQIQNPIFDPRLLDNSFGPMFSDLQAQSPPA
FVRSSHVPDTTSLAHRFAIDTIAEHSEEAIEAARAYILRVYPRIDQPGGA
LWPSQRAVACWRDLSAFARVAAYLAICENGLSTRGMHIMQQVYYEMNVPL
DAVRTGVHCIREQLADRAAYNNDSEASKIVRTAFDQLLGYLSTF*
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mRNA from alignment at tig00000168_pilon:121318..122052+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3315.t1 ID=Gchil3315.t1|Name=Gchil3315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000168_pilon:121318..122052+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCTTACTCCATCACCGCCTTCGCTCTTTCACCTTCGCCTCTTGT
TCGCTCGCTGCGGCCGTCGAACAACGTCGCATACTGCCGCAGCTCCAGCT
CCAAAAGAAGCGTACAGTATACTGCCCAATTGCCGCGCAGCGCGGCTCCA
GCAACTCCGCCCGTTGCTACAACATCCGTCTCGCCGAGAGCTAAGCAATT
AATCGAACAACAGATACAAAACCCAATATTCGATCCACGCCTTCTGGACA
ATTCCTTTGGCCCCATGTTTTCCGACTTGCAGGCTCAATCCCCGCCAGCT
TTTGTGCGCTCTTCGCACGTCCCAGATACCACGTCACTAGCCCACCGCTT
CGCAATTGACACCATCGCCGAACACTCGGAGGAAGCCATCGAAGCAGCGC
GCGCCTATATATTGCGCGTCTATCCGCGCATCGATCAGCCGGGTGGAGCT
CTCTGGCCATCTCAGAGAGCCGTCGCTTGTTGGCGCGATCTTTCCGCCTT
TGCCCGTGTAGCAGCATACTTGGCAATTTGTGAAAATGGTCTGTCCACTC
GCGGCATGCACATCATGCAGCAGGTATATTATGAGATGAATGTCCCTTTG
GATGCGGTACGAACCGGTGTGCATTGTATTCGGGAACAACTTGCTGACCG
TGCCGCGTACAACAATGATTCAGAGGCCTCAAAAATTGTGCGAACTGCCT
TTGACCAGTTACTCGGCTACCTCTCTACTTTCTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:121318..122052+

>Gchil3315.t1 ID=Gchil3315.t1|Name=Gchil3315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000168_pilon:121318..122052+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCTTACTCCATCACCGCCTTCGCTCTTTCACCTTCGCCTCTTGT
TCGCTCGCTGCGGCCGTCGAACAACGTCGCATACTGCCGCAGCTCCAGCT
CCAAAAGAAGCGTACAGTATACTGCCCAATTGCCGCGCAGCGCGGCTCCA
GCAACTCCGCCCGTTGCTACAACATCCGTCTCGCCGAGAGCTAAGCAATT
AATCGAACAACAGATACAAAACCCAATATTCGATCCACGCCTTCTGGACA
ATTCCTTTGGCCCCATGTTTTCCGACTTGCAGGCTCAATCCCCGCCAGCT
TTTGTGCGCTCTTCGCACGTCCCAGATACCACGTCACTAGCCCACCGCTT
CGCAATTGACACCATCGCCGAACACTCGGAGGAAGCCATCGAAGCAGCGC
GCGCCTATATATTGCGCGTCTATCCGCGCATCGATCAGCCGGGTGGAGCT
CTCTGGCCATCTCAGAGAGCCGTCGCTTGTTGGCGCGATCTTTCCGCCTT
TGCCCGTGTAGCAGCATACTTGGCAATTTGTGAAAATGGTCTGTCCACTC
GCGGCATGCACATCATGCAGCAGGTATATTATGAGATGAATGTCCCTTTG
GATGCGGTACGAACCGGTGTGCATTGTATTCGGGAACAACTTGCTGACCG
TGCCGCGTACAACAATGATTCAGAGGCCTCAAAAATTGTGCGAACTGCCT
TTGACCAGTTACTCGGCTACCTCTCTACTTTCTAA
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