Gchil3303.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3303.t1
Unique NameGchil3303.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:86035..86619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3303Gchil3303Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 86035..86619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3303.t1Gchil3303.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 86035..86619 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3303.t1.start1Gchil3303.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 86035..86037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3303.t1.CDS1Gchil3303.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 86035..86091 +
Gchil3303.t1.CDS2Gchil3303.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 86196..86327 +
Gchil3303.t1.CDS3Gchil3303.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 86410..86619 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3303.t1.exon1Gchil3303.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 86035..86091 +
Gchil3303.t1.exon2Gchil3303.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 86196..86327 +
Gchil3303.t1.exon3Gchil3303.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 86410..86619 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3303.t1.intron1Gchil3303.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 86092..86195 +
Gchil3303.t1.intron2Gchil3303.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 86328..86409 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3303.t1.stop1Gchil3303.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 86617..86619 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3303.t1 ID=Gchil3303.t1|Name=Gchil3303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=133bp
MENICLFNANVGRSRCDYGLMWSAIGLVILTVTIAWYCIEYCTRFNLPGR
AEVLIFSWLALWWLVGSITLTVTKSSRAPMIALIPIIFAWMLFAFCLTSV
FVASRSPIRKTSSRAQQTETPQPDGVEVATSS*
back to top

spliced messenger RNA

>Gchil3303.t1 ID=Gchil3303.t1|Name=Gchil3303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000168_pilon:86035..86619+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACATATGCCTTTTCAATGCGAACGTCGGAAGAAGTCGTTGTGA
TTATGGGCTCATGTGGTCTGCGATTGGTCTCGTTATTCTCACAGTCACGA
TTGCGTGGTATTGTATCGAGTATTGTACTCGTTTCAATTTACCAGGACGT
GCCGAGGTGCTGATCTTTTCATGGCTTGCACTCTGGTGGCTTGTTGGAAG
TATAACTCTCACAGTTACAAAGTCGAGCAGAGCTCCAATGATCGCATTGA
TTCCGATCATCTTCGCATGGATGCTTTTTGCCTTTTGTCTTACGTCTGTA
TTTGTCGCCAGTCGTAGTCCCATTCGTAAAACATCATCTCGGGCCCAGCA
AACAGAAACCCCGCAGCCCGATGGCGTGGAAGTAGCTACATCCTCGTAG
back to top

protein sequence of Gchil3303.t1

>Gchil3303.t1 ID=Gchil3303.t1|Name=Gchil3303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=133bp
MENICLFNANVGRSRCDYGLMWSAIGLVILTVTIAWYCIEYCTRFNLPGR
AEVLIFSWLALWWLVGSITLTVTKSSRAPMIALIPIIFAWMLFAFCLTSV
FVASRSPIRKTSSRAQQTETPQPDGVEVATSS*
back to top

mRNA from alignment at tig00000168_pilon:86035..86619+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3303.t1 ID=Gchil3303.t1|Name=Gchil3303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000168_pilon:86035..86619+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACATATGCCTTTTCAATGCGAACGTCGGAAGAAGTCGTTGTGA
TTATGGGGTCCGTTCTGATACCCTTCCTTAACGCAATGAAACCAGTGAAG
ATCGGGAAGCTTCCCATGACTGACGACTTTTTTGCAAACCGCGCTCAACT
TTGATATGAAGCTCATGTGGTCTGCGATTGGTCTCGTTATTCTCACAGTC
ACGATTGCGTGGTATTGTATCGAGTATTGTACTCGTTTCAATTTACCAGG
ACGTGCCGAGGTGCTGATCTTTTCATGGCTTGCACTCTGGTGGGTAAGTT
TCTGTGTTCTAGAGAAAACGCCTTCACCTATCTTTCTGCAAAGGAAAAGC
CACTTACTAACAATACCACATATAGCTTGTTGGAAGTATAACTCTCACAG
TTACAAAGTCGAGCAGAGCTCCAATGATCGCATTGATTCCGATCATCTTC
GCATGGATGCTTTTTGCCTTTTGTCTTACGTCTGTATTTGTCGCCAGTCG
TAGTCCCATTCGTAAAACATCATCTCGGGCCCAGCAAACAGAAACCCCGC
AGCCCGATGGCGTGGAAGTAGCTACATCCTCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:86035..86619+

>Gchil3303.t1 ID=Gchil3303.t1|Name=Gchil3303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00000168_pilon:86035..86619+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACATATGCCTTTTCAATGCGAACGTCGGAAGAAGTCGTTGTGA
TTATGGGCTCATGTGGTCTGCGATTGGTCTCGTTATTCTCACAGTCACGA
TTGCGTGGTATTGTATCGAGTATTGTACTCGTTTCAATTTACCAGGACGT
GCCGAGGTGCTGATCTTTTCATGGCTTGCACTCTGGTGGCTTGTTGGAAG
TATAACTCTCACAGTTACAAAGTCGAGCAGAGCTCCAATGATCGCATTGA
TTCCGATCATCTTCGCATGGATGCTTTTTGCCTTTTGTCTTACGTCTGTA
TTTGTCGCCAGTCGTAGTCCCATTCGTAAAACATCATCTCGGGCCCAGCA
AACAGAAACCCCGCAGCCCGATGGCGTGGAAGTAGCTACATCCTCGTAG
back to top