Gchil3299.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3299.t1
Unique Name	Gchil3299.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:72112..73950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1430440.MGMSRv2_3580
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	204441\|Rhodospirillales
KEGG ko	ko:K06147
KEGG TC	3.A.1.106,3.A.1.109,3.A.1.21
Evalue	1.74e-128
EggNOG OGs	COG5265@1\|root,COG5265@2\|Bacteria,1NSKS@1224\|Proteobacteria,2UQAG@28211\|Alphaproteobacteria,2JR6D@204441\|Rhodospirillales
Description	COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components
COG category	V
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3299	Gchil3299	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 72112..73950 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3299.t1.start1	Gchil3299.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 72112..72114 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3299.t1.CDS1	Gchil3299.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 72112..73950 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3299.t1.exon1	Gchil3299.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 72112..73950 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3299.t1.stop1	Gchil3299.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 73948..73950 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3299.t1	Gchil3299.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 72112..73950 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:72112..73950+
coding sequence from alignment at tig00000168_pilon:72112..73950+

mRNA sequence

>Gchil3299.t1 ID=Gchil3299.t1|Name=Gchil3299.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=613bp
MGFCLPFIVPNTFSLKLYSFLCILCVTGYKACLLVPGLSMKIVVDALASS
DPEVRAHRPIFGLLLFLGGRALGGVLGQGQELAQEYCGSHLSKVFAVRSF
SHIQSLSLSYHTTKNTGETTSILGRGIGSITSLLRLVVFNLGPTIIEAIF
VSGIFFRLGSPLIALVTLVTVVGYVIFTGYMTQWRVRCGRELREAQNKAW
SCATETIVNFGTVKSFGMEKAEVSRYSSLWEVAQQIAVRSTGILTGFKFG
QTFIVHLGTFFGLVIAAVHASRGVITIGDFTMIQAYIGQLFGPLLWFGNS
YGQVVSALTNLEQVMELFEKESEVQDAPNAEELHIDVKEGKPKGGEIVFD
NVSFAYGGKQQTEYGPSVKRGGQVERVNFRVPAGKMVALVGPSGAGKSTL
VKLLLRLYDTQEGRVLIDGKDVKLLKQDSLRHAIGLVAQETTLFNDTLEK
NIKFGRPDATDDELWSAIRLASLEEFVLKQPLGLKTGVGDQGLRLSGGER
QRVGIARAVLKDPAIMLLDEATSALSTIDERRIQKNLQQLCQDRTTVAVA
HRLSTVMMADEILVVNNGRIVERGSHDELVQKKGLYGHMWAIQAGMVNGG
GTEDGIEPTHQY*

spliced messenger RNA

>Gchil3299.t1 ID=Gchil3299.t1|Name=Gchil3299.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000168_pilon:72112..73950+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTCTGCTTACCATTTATTGTACCGAATACCTTCTCCCTAAAGCT
ATATTCGTTTCTGTGCATTCTTTGTGTAACCGGATACAAGGCATGCTTGC
TTGTCCCGGGCCTGTCCATGAAAATTGTTGTGGATGCATTGGCGAGCAGT
GATCCAGAAGTCAGGGCTCATCGACCAATATTTGGATTATTACTGTTCTT
AGGTGGACGTGCACTTGGCGGCGTTCTTGGCCAAGGTCAAGAACTAGCTC
AAGAATACTGCGGTTCTCACCTTTCAAAGGTATTTGCAGTTCGATCCTTT
AGTCACATTCAATCGCTTTCATTGTCATATCATACCACTAAGAACACTGG
TGAGACGACCTCTATTCTTGGGCGTGGCATTGGATCCATAACCAGCCTCT
TACGGCTGGTCGTGTTCAATCTCGGACCTACTATTATTGAGGCCATTTTC
GTTTCCGGTATATTCTTTCGGCTCGGTTCCCCACTTATAGCACTGGTAAC
ACTGGTGACAGTAGTCGGATACGTCATCTTCACTGGCTACATGACACAAT
GGAGAGTTAGATGTGGACGCGAACTTCGAGAGGCACAAAACAAGGCGTGG
TCGTGTGCAACGGAGACTATTGTAAACTTTGGAACCGTCAAGTCTTTTGG
GATGGAGAAGGCCGAAGTTTCAAGATACTCATCCTTGTGGGAAGTCGCCC
AACAAATCGCCGTAAGGTCCACTGGAATCCTCACGGGATTCAAGTTTGGA
CAAACGTTCATTGTACATTTGGGTACTTTCTTTGGGCTTGTTATTGCCGC
CGTTCACGCCTCAAGGGGTGTGATTACCATTGGCGACTTCACCATGATCC
AAGCGTATATTGGTCAGTTGTTTGGCCCACTTTTGTGGTTTGGAAACTCT
TATGGACAGGTTGTATCGGCTCTGACAAACCTTGAGCAAGTTATGGAGCT
TTTTGAGAAAGAAAGCGAAGTGCAAGACGCGCCAAATGCTGAAGAATTGC
ACATCGACGTGAAAGAAGGAAAACCCAAAGGCGGAGAAATCGTTTTCGAC
AACGTTTCCTTCGCCTATGGCGGGAAACAACAAACAGAGTATGGTCCTTC
TGTTAAGCGAGGAGGGCAAGTGGAGCGTGTAAACTTCCGAGTTCCTGCCG
GGAAAATGGTGGCGTTGGTGGGTCCCTCAGGTGCTGGCAAATCTACGTTG
GTAAAACTGCTTCTCCGCCTATACGATACACAAGAAGGGCGCGTCCTTAT
TGACGGGAAGGACGTAAAACTGCTCAAACAAGACTCCCTGCGCCACGCTA
TTGGGCTTGTAGCCCAAGAAACCACTCTGTTTAACGACACTCTGGAAAAG
AACATCAAGTTTGGCAGACCAGATGCGACTGATGATGAACTTTGGAGCGC
AATTCGCCTAGCCTCTCTGGAAGAATTCGTATTAAAACAACCACTTGGGC
TCAAGACGGGCGTCGGTGACCAAGGACTGCGACTATCCGGGGGGGAAAGA
CAGCGAGTAGGCATTGCACGCGCGGTGTTGAAAGATCCTGCGATTATGCT
GTTGGATGAAGCTACGTCGGCGTTGTCAACAATTGATGAGCGCCGGATTC
AGAAGAACCTGCAACAGCTTTGCCAGGATCGTACAACGGTGGCGGTGGCT
CATCGCTTATCAACTGTCATGATGGCAGATGAGATATTGGTGGTGAACAA
CGGTCGAATAGTTGAACGTGGTTCACACGATGAGTTAGTGCAAAAGAAGG
GATTGTACGGGCATATGTGGGCCATTCAGGCTGGAATGGTCAACGGAGGT
GGCACTGAGGATGGCATAGAACCCACGCACCAATATTAA

protein sequence of Gchil3299.t1

>Gchil3299.t1 ID=Gchil3299.t1|Name=Gchil3299.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=613bp
MGFCLPFIVPNTFSLKLYSFLCILCVTGYKACLLVPGLSMKIVVDALASS
DPEVRAHRPIFGLLLFLGGRALGGVLGQGQELAQEYCGSHLSKVFAVRSF
SHIQSLSLSYHTTKNTGETTSILGRGIGSITSLLRLVVFNLGPTIIEAIF
VSGIFFRLGSPLIALVTLVTVVGYVIFTGYMTQWRVRCGRELREAQNKAW
SCATETIVNFGTVKSFGMEKAEVSRYSSLWEVAQQIAVRSTGILTGFKFG
QTFIVHLGTFFGLVIAAVHASRGVITIGDFTMIQAYIGQLFGPLLWFGNS
YGQVVSALTNLEQVMELFEKESEVQDAPNAEELHIDVKEGKPKGGEIVFD
NVSFAYGGKQQTEYGPSVKRGGQVERVNFRVPAGKMVALVGPSGAGKSTL
VKLLLRLYDTQEGRVLIDGKDVKLLKQDSLRHAIGLVAQETTLFNDTLEK
NIKFGRPDATDDELWSAIRLASLEEFVLKQPLGLKTGVGDQGLRLSGGER
QRVGIARAVLKDPAIMLLDEATSALSTIDERRIQKNLQQLCQDRTTVAVA
HRLSTVMMADEILVVNNGRIVERGSHDELVQKKGLYGHMWAIQAGMVNGG
GTEDGIEPTHQY*

mRNA from alignment at tig00000168_pilon:72112..73950+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3299.t1 ID=Gchil3299.t1|Name=Gchil3299.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000168_pilon:72112..73950+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTTCTGCTTACCATTTATTGTACCGAATACCTTCTCCCTAAAGCT
ATATTCGTTTCTGTGCATTCTTTGTGTAACCGGATACAAGGCATGCTTGC
TTGTCCCGGGCCTGTCCATGAAAATTGTTGTGGATGCATTGGCGAGCAGT
GATCCAGAAGTCAGGGCTCATCGACCAATATTTGGATTATTACTGTTCTT
AGGTGGACGTGCACTTGGCGGCGTTCTTGGCCAAGGTCAAGAACTAGCTC
AAGAATACTGCGGTTCTCACCTTTCAAAGGTATTTGCAGTTCGATCCTTT
AGTCACATTCAATCGCTTTCATTGTCATATCATACCACTAAGAACACTGG
TGAGACGACCTCTATTCTTGGGCGTGGCATTGGATCCATAACCAGCCTCT
TACGGCTGGTCGTGTTCAATCTCGGACCTACTATTATTGAGGCCATTTTC
GTTTCCGGTATATTCTTTCGGCTCGGTTCCCCACTTATAGCACTGGTAAC
ACTGGTGACAGTAGTCGGATACGTCATCTTCACTGGCTACATGACACAAT
GGAGAGTTAGATGTGGACGCGAACTTCGAGAGGCACAAAACAAGGCGTGG
TCGTGTGCAACGGAGACTATTGTAAACTTTGGAACCGTCAAGTCTTTTGG
GATGGAGAAGGCCGAAGTTTCAAGATACTCATCCTTGTGGGAAGTCGCCC
AACAAATCGCCGTAAGGTCCACTGGAATCCTCACGGGATTCAAGTTTGGA
CAAACGTTCATTGTACATTTGGGTACTTTCTTTGGGCTTGTTATTGCCGC
CGTTCACGCCTCAAGGGGTGTGATTACCATTGGCGACTTCACCATGATCC
AAGCGTATATTGGTCAGTTGTTTGGCCCACTTTTGTGGTTTGGAAACTCT
TATGGACAGGTTGTATCGGCTCTGACAAACCTTGAGCAAGTTATGGAGCT
TTTTGAGAAAGAAAGCGAAGTGCAAGACGCGCCAAATGCTGAAGAATTGC
ACATCGACGTGAAAGAAGGAAAACCCAAAGGCGGAGAAATCGTTTTCGAC
AACGTTTCCTTCGCCTATGGCGGGAAACAACAAACAGAGTATGGTCCTTC
TGTTAAGCGAGGAGGGCAAGTGGAGCGTGTAAACTTCCGAGTTCCTGCCG
GGAAAATGGTGGCGTTGGTGGGTCCCTCAGGTGCTGGCAAATCTACGTTG
GTAAAACTGCTTCTCCGCCTATACGATACACAAGAAGGGCGCGTCCTTAT
TGACGGGAAGGACGTAAAACTGCTCAAACAAGACTCCCTGCGCCACGCTA
TTGGGCTTGTAGCCCAAGAAACCACTCTGTTTAACGACACTCTGGAAAAG
AACATCAAGTTTGGCAGACCAGATGCGACTGATGATGAACTTTGGAGCGC
AATTCGCCTAGCCTCTCTGGAAGAATTCGTATTAAAACAACCACTTGGGC
TCAAGACGGGCGTCGGTGACCAAGGACTGCGACTATCCGGGGGGGAAAGA
CAGCGAGTAGGCATTGCACGCGCGGTGTTGAAAGATCCTGCGATTATGCT
GTTGGATGAAGCTACGTCGGCGTTGTCAACAATTGATGAGCGCCGGATTC
AGAAGAACCTGCAACAGCTTTGCCAGGATCGTACAACGGTGGCGGTGGCT
CATCGCTTATCAACTGTCATGATGGCAGATGAGATATTGGTGGTGAACAA
CGGTCGAATAGTTGAACGTGGTTCACACGATGAGTTAGTGCAAAAGAAGG
GATTGTACGGGCATATGTGGGCCATTCAGGCTGGAATGGTCAACGGAGGT
GGCACTGAGGATGGCATAGAACCCACGCACCAATATTAA

Coding sequence (CDS) from alignment at tig00000168_pilon:72112..73950+

>Gchil3299.t1 ID=Gchil3299.t1|Name=Gchil3299.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00000168_pilon:72112..73950+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTTCTGCTTACCATTTATTGTACCGAATACCTTCTCCCTAAAGCT
ATATTCGTTTCTGTGCATTCTTTGTGTAACCGGATACAAGGCATGCTTGC
TTGTCCCGGGCCTGTCCATGAAAATTGTTGTGGATGCATTGGCGAGCAGT
GATCCAGAAGTCAGGGCTCATCGACCAATATTTGGATTATTACTGTTCTT
AGGTGGACGTGCACTTGGCGGCGTTCTTGGCCAAGGTCAAGAACTAGCTC
AAGAATACTGCGGTTCTCACCTTTCAAAGGTATTTGCAGTTCGATCCTTT
AGTCACATTCAATCGCTTTCATTGTCATATCATACCACTAAGAACACTGG
TGAGACGACCTCTATTCTTGGGCGTGGCATTGGATCCATAACCAGCCTCT
TACGGCTGGTCGTGTTCAATCTCGGACCTACTATTATTGAGGCCATTTTC
GTTTCCGGTATATTCTTTCGGCTCGGTTCCCCACTTATAGCACTGGTAAC
ACTGGTGACAGTAGTCGGATACGTCATCTTCACTGGCTACATGACACAAT
GGAGAGTTAGATGTGGACGCGAACTTCGAGAGGCACAAAACAAGGCGTGG
TCGTGTGCAACGGAGACTATTGTAAACTTTGGAACCGTCAAGTCTTTTGG
GATGGAGAAGGCCGAAGTTTCAAGATACTCATCCTTGTGGGAAGTCGCCC
AACAAATCGCCGTAAGGTCCACTGGAATCCTCACGGGATTCAAGTTTGGA
CAAACGTTCATTGTACATTTGGGTACTTTCTTTGGGCTTGTTATTGCCGC
CGTTCACGCCTCAAGGGGTGTGATTACCATTGGCGACTTCACCATGATCC
AAGCGTATATTGGTCAGTTGTTTGGCCCACTTTTGTGGTTTGGAAACTCT
TATGGACAGGTTGTATCGGCTCTGACAAACCTTGAGCAAGTTATGGAGCT
TTTTGAGAAAGAAAGCGAAGTGCAAGACGCGCCAAATGCTGAAGAATTGC
ACATCGACGTGAAAGAAGGAAAACCCAAAGGCGGAGAAATCGTTTTCGAC
AACGTTTCCTTCGCCTATGGCGGGAAACAACAAACAGAGTATGGTCCTTC
TGTTAAGCGAGGAGGGCAAGTGGAGCGTGTAAACTTCCGAGTTCCTGCCG
GGAAAATGGTGGCGTTGGTGGGTCCCTCAGGTGCTGGCAAATCTACGTTG
GTAAAACTGCTTCTCCGCCTATACGATACACAAGAAGGGCGCGTCCTTAT
TGACGGGAAGGACGTAAAACTGCTCAAACAAGACTCCCTGCGCCACGCTA
TTGGGCTTGTAGCCCAAGAAACCACTCTGTTTAACGACACTCTGGAAAAG
AACATCAAGTTTGGCAGACCAGATGCGACTGATGATGAACTTTGGAGCGC
AATTCGCCTAGCCTCTCTGGAAGAATTCGTATTAAAACAACCACTTGGGC
TCAAGACGGGCGTCGGTGACCAAGGACTGCGACTATCCGGGGGGGAAAGA
CAGCGAGTAGGCATTGCACGCGCGGTGTTGAAAGATCCTGCGATTATGCT
GTTGGATGAAGCTACGTCGGCGTTGTCAACAATTGATGAGCGCCGGATTC
AGAAGAACCTGCAACAGCTTTGCCAGGATCGTACAACGGTGGCGGTGGCT
CATCGCTTATCAACTGTCATGATGGCAGATGAGATATTGGTGGTGAACAA
CGGTCGAATAGTTGAACGTGGTTCACACGATGAGTTAGTGCAAAAGAAGG
GATTGTACGGGCATATGTGGGCCATTCAGGCTGGAATGGTCAACGGAGGT
GGCACTGAGGATGGCATAGAACCCACGCACCAATATTAA