Gchil3295.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3295.t1
Unique NameGchil3295.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:60973..61865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3295Gchil3295Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 60973..61865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3295.t1Gchil3295.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 60973..61865 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3295.t1.stop1Gchil3295.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 60973..60975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3295.t1.CDS1Gchil3295.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 60973..61683 -
Gchil3295.t1.CDS2Gchil3295.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 61788..61865 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3295.t1.exon1Gchil3295.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 60973..61683 -
Gchil3295.t1.exon2Gchil3295.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 61788..61865 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3295.t1.intron1Gchil3295.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 61684..61787 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3295.t1.start1Gchil3295.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 61863..61865 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3295.t1 ID=Gchil3295.t1|Name=Gchil3295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=263bp
MAVDLTPAFQVTLYLVFLESLLFFAVIMQAKSVEPGTHSGVARYFGTIFL
FQAGASLFLGLSEQTYQGYFSLYLAIVCVICTVIAVGFCIPAAVVVAVPE
PDKNGHRAAAYLLAISNVLVASFIFSSQLEATPDIPYINRLLRRELLGAV
IGAMCVLVVACLVRMARRLKGRNGAYILLSGLVLIAIFGLLWTYLEPICR
VASPEQEWPSKCPVPRILDHNFMMTLLIVIANVLTAEGVLRLMAAGTGVE
DYVEIVPIINTT*
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spliced messenger RNA

>Gchil3295.t1 ID=Gchil3295.t1|Name=Gchil3295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000168_pilon:60973..61865- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCGATCTCACGCCCGCCTTTCAGGTCACCTTGTACCTCGTGTT
TCTGGAAAGCTTGTTGTTCTTCGCGGTTATCATGCAGGCGAAATCCGTTG
AACCGGGAACTCACTCCGGAGTGGCGCGATACTTTGGAACAATCTTTCTC
TTTCAAGCCGGAGCGTCCTTGTTTCTTGGCCTGTCCGAACAAACATATCA
GGGTTATTTTTCGTTATATCTGGCGATTGTATGCGTTATTTGCACCGTTA
TTGCCGTCGGGTTTTGCATTCCTGCCGCAGTTGTGGTCGCTGTACCTGAA
CCGGACAAAAACGGTCACCGAGCTGCAGCGTACTTGCTAGCCATTTCAAA
CGTGCTTGTTGCATCCTTTATCTTTTCGTCGCAGTTAGAGGCTACACCAG
ATATTCCGTACATCAATCGTTTGTTACGTCGCGAACTGCTTGGCGCTGTC
ATTGGCGCCATGTGTGTACTAGTGGTTGCGTGTTTGGTACGCATGGCGAG
GAGACTCAAAGGCAGAAATGGCGCTTACATTCTACTTTCCGGATTGGTGC
TGATCGCTATCTTTGGGTTGCTATGGACGTATTTGGAACCTATTTGTCGA
GTAGCTTCTCCTGAACAAGAATGGCCATCAAAGTGTCCCGTGCCAAGAAT
TTTGGATCACAACTTCATGATGACACTGCTCATTGTGATCGCAAATGTGC
TCACTGCAGAGGGTGTTCTGAGATTGATGGCGGCTGGCACGGGTGTGGAA
GACTATGTAGAAATCGTTCCGATTATCAACACAACATAG
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protein sequence of Gchil3295.t1

>Gchil3295.t1 ID=Gchil3295.t1|Name=Gchil3295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=263bp
MAVDLTPAFQVTLYLVFLESLLFFAVIMQAKSVEPGTHSGVARYFGTIFL
FQAGASLFLGLSEQTYQGYFSLYLAIVCVICTVIAVGFCIPAAVVVAVPE
PDKNGHRAAAYLLAISNVLVASFIFSSQLEATPDIPYINRLLRRELLGAV
IGAMCVLVVACLVRMARRLKGRNGAYILLSGLVLIAIFGLLWTYLEPICR
VASPEQEWPSKCPVPRILDHNFMMTLLIVIANVLTAEGVLRLMAAGTGVE
DYVEIVPIINTT*
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mRNA from alignment at tig00000168_pilon:60973..61865-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3295.t1 ID=Gchil3295.t1|Name=Gchil3295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=893bp|location=Sequence derived from alignment at tig00000168_pilon:60973..61865- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTCGATCTCACGCCCGCCTTTCAGGTCACCTTGTACCTCGTGTT
TCTGGAAAGCTTGTTGTTCTTCGCGGTTGTACGTTACCATCCCCTTTGCT
TCAACTGCGTTGCTCCGTTTATCAAAGTTACTAACACGTCGTGCGTCGCC
CGTTGCCCGCAATTTGCGTTTCCGTACTACAGATCATGCAGGCGAAATCC
GTTGAACCGGGAACTCACTCCGGAGTGGCGCGATACTTTGGAACAATCTT
TCTCTTTCAAGCCGGAGCGTCCTTGTTTCTTGGCCTGTCCGAACAAACAT
ATCAGGGTTATTTTTCGTTATATCTGGCGATTGTATGCGTTATTTGCACC
GTTATTGCCGTCGGGTTTTGCATTCCTGCCGCAGTTGTGGTCGCTGTACC
TGAACCGGACAAAAACGGTCACCGAGCTGCAGCGTACTTGCTAGCCATTT
CAAACGTGCTTGTTGCATCCTTTATCTTTTCGTCGCAGTTAGAGGCTACA
CCAGATATTCCGTACATCAATCGTTTGTTACGTCGCGAACTGCTTGGCGC
TGTCATTGGCGCCATGTGTGTACTAGTGGTTGCGTGTTTGGTACGCATGG
CGAGGAGACTCAAAGGCAGAAATGGCGCTTACATTCTACTTTCCGGATTG
GTGCTGATCGCTATCTTTGGGTTGCTATGGACGTATTTGGAACCTATTTG
TCGAGTAGCTTCTCCTGAACAAGAATGGCCATCAAAGTGTCCCGTGCCAA
GAATTTTGGATCACAACTTCATGATGACACTGCTCATTGTGATCGCAAAT
GTGCTCACTGCAGAGGGTGTTCTGAGATTGATGGCGGCTGGCACGGGTGT
GGAAGACTATGTAGAAATCGTTCCGATTATCAACACAACATAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:60973..61865-

>Gchil3295.t1 ID=Gchil3295.t1|Name=Gchil3295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000168_pilon:60973..61865- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTCGATCTCACGCCCGCCTTTCAGGTCACCTTGTACCTCGTGTT
TCTGGAAAGCTTGTTGTTCTTCGCGGTTATCATGCAGGCGAAATCCGTTG
AACCGGGAACTCACTCCGGAGTGGCGCGATACTTTGGAACAATCTTTCTC
TTTCAAGCCGGAGCGTCCTTGTTTCTTGGCCTGTCCGAACAAACATATCA
GGGTTATTTTTCGTTATATCTGGCGATTGTATGCGTTATTTGCACCGTTA
TTGCCGTCGGGTTTTGCATTCCTGCCGCAGTTGTGGTCGCTGTACCTGAA
CCGGACAAAAACGGTCACCGAGCTGCAGCGTACTTGCTAGCCATTTCAAA
CGTGCTTGTTGCATCCTTTATCTTTTCGTCGCAGTTAGAGGCTACACCAG
ATATTCCGTACATCAATCGTTTGTTACGTCGCGAACTGCTTGGCGCTGTC
ATTGGCGCCATGTGTGTACTAGTGGTTGCGTGTTTGGTACGCATGGCGAG
GAGACTCAAAGGCAGAAATGGCGCTTACATTCTACTTTCCGGATTGGTGC
TGATCGCTATCTTTGGGTTGCTATGGACGTATTTGGAACCTATTTGTCGA
GTAGCTTCTCCTGAACAAGAATGGCCATCAAAGTGTCCCGTGCCAAGAAT
TTTGGATCACAACTTCATGATGACACTGCTCATTGTGATCGCAAATGTGC
TCACTGCAGAGGGTGTTCTGAGATTGATGGCGGCTGGCACGGGTGTGGAA
GACTATGTAGAAATCGTTCCGATTATCAACACAACATAG
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