Gchil3290.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3290.t1
Unique NameGchil3290.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:34284..35714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3290Gchil3290Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 34284..35714 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3290.t1.stop1Gchil3290.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 34284..34286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3290.t1.CDS1Gchil3290.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 34284..35714 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3290.t1.exon1Gchil3290.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 34284..35714 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3290.t1.start1Gchil3290.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 35712..35714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3290.t1Gchil3290.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 34284..35714 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3290.t1 ID=Gchil3290.t1|Name=Gchil3290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp
MRVCAASRFEHVATAAEAATRALQPIRVVLFVTRLDASRVAGADADMEWL
ACVRHVFTDAVLPRLLFVLLHAGSLPPRALSFAEFVRLRCDLLHALLRRV
FPPVHIAGGVGIAHAPQLVRDHQRRLRHDGHAHAHAAFSPLSPPLSPSSS
SSSSSSSSSSPPPLTEKALAELEARITRDWLRQKPPPQVDRLHACLVNDE
STDAASASALSDSLIHHVHRSGVYPLDRRVFVDPPRPPVFILHLREPASD
AAAFSQSIPPHPFVVSVPALIDATLRVARRPLSDAQPSHNMRCAPPPPDT
ATSSGRRARALRRLYHAFVRGGAKTMVVTFALTYAALVVYARLIDRHRAW
KKARCDDEALLLELDDAEYERLTTPDPGSDGSLTLESAPPPPPPPPQHRQ
QKPTLSDAETHFFGPDGQSHSTPPSPSQSPRTFAAPNSTKGGDDDSDWHK
LADGERIYKQSFTLENKHRWQHLDTD*
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spliced messenger RNA

>Gchil3290.t1 ID=Gchil3290.t1|Name=Gchil3290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000168_pilon:34284..35714- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGTGCGCGGCGAGTCGCTTCGAGCACGTGGCGACGGCGGCGGA
GGCAGCCACGCGCGCGCTGCAGCCCATTCGCGTAGTGTTGTTCGTCACGC
GCTTGGACGCGTCGCGCGTGGCGGGTGCCGACGCCGACATGGAGTGGCTC
GCGTGCGTACGTCATGTGTTTACGGATGCCGTGCTGCCGCGTCTGCTCTT
CGTGTTGCTACACGCCGGGTCGTTGCCGCCGCGCGCCCTGTCGTTTGCTG
AGTTTGTACGCTTGCGTTGCGATTTGCTGCACGCGTTGCTGCGTCGTGTG
TTTCCGCCCGTGCACATCGCCGGCGGCGTGGGCATTGCGCACGCCCCGCA
GCTCGTGCGCGACCATCAGCGCCGCCTGCGCCATGATGGCCACGCGCACG
CGCACGCTGCATTCTCGCCCTTGTCGCCCCCGCTGTCGCCGTCGTCCTCG
TCGTCGTCCTCGTCGTCGTCCTCGTCGTCGCCGCCGCCGCTGACGGAGAA
GGCGCTTGCGGAGCTGGAGGCGCGCATCACGCGCGACTGGCTGCGGCAGA
AACCGCCCCCGCAGGTGGACCGACTGCACGCCTGTCTGGTCAACGACGAG
TCCACGGATGCCGCGAGCGCGTCCGCGCTCTCCGACTCGCTCATACACCA
TGTGCATCGCAGCGGTGTATACCCGCTAGACCGCCGCGTCTTCGTGGACC
CGCCGCGTCCGCCCGTCTTCATCCTGCACCTACGCGAGCCCGCGAGCGAC
GCCGCTGCCTTCTCGCAATCAATCCCGCCGCACCCCTTCGTCGTCTCCGT
CCCCGCCCTCATCGACGCCACTCTGCGCGTCGCGCGCCGCCCCCTTTCAG
ACGCCCAACCGTCGCACAACATGCGCTGCGCCCCGCCCCCGCCCGACACC
GCCACGTCTTCTGGTCGTCGTGCGCGCGCGCTGCGTCGCCTGTATCACGC
TTTTGTGCGCGGCGGTGCCAAAACTATGGTCGTCACGTTTGCGCTCACGT
ACGCGGCGTTGGTCGTGTATGCGCGTCTTATCGACCGCCATCGCGCGTGG
AAAAAGGCGCGCTGCGATGATGAGGCGCTGCTGCTCGAGCTGGACGACGC
CGAGTACGAGCGCCTCACCACGCCGGATCCCGGCTCCGACGGCTCGCTCA
CGCTGGAGAGCGCCCCGCCGCCGCCGCCGCCGCCGCCGCAGCACCGCCAG
CAGAAACCTACCTTGTCCGACGCCGAAACGCACTTTTTCGGGCCCGACGG
CCAGAGCCACTCAACGCCGCCGTCGCCGTCGCAGTCGCCGCGCACGTTCG
CCGCCCCGAATAGCACCAAGGGGGGCGACGATGACTCGGACTGGCACAAG
CTCGCCGACGGCGAACGCATCTACAAGCAGAGCTTTACGCTTGAAAACAA
GCACCGCTGGCAGCACCTTGACACTGATTAG
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protein sequence of Gchil3290.t1

>Gchil3290.t1 ID=Gchil3290.t1|Name=Gchil3290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=477bp
MRVCAASRFEHVATAAEAATRALQPIRVVLFVTRLDASRVAGADADMEWL
ACVRHVFTDAVLPRLLFVLLHAGSLPPRALSFAEFVRLRCDLLHALLRRV
FPPVHIAGGVGIAHAPQLVRDHQRRLRHDGHAHAHAAFSPLSPPLSPSSS
SSSSSSSSSSPPPLTEKALAELEARITRDWLRQKPPPQVDRLHACLVNDE
STDAASASALSDSLIHHVHRSGVYPLDRRVFVDPPRPPVFILHLREPASD
AAAFSQSIPPHPFVVSVPALIDATLRVARRPLSDAQPSHNMRCAPPPPDT
ATSSGRRARALRRLYHAFVRGGAKTMVVTFALTYAALVVYARLIDRHRAW
KKARCDDEALLLELDDAEYERLTTPDPGSDGSLTLESAPPPPPPPPQHRQ
QKPTLSDAETHFFGPDGQSHSTPPSPSQSPRTFAAPNSTKGGDDDSDWHK
LADGERIYKQSFTLENKHRWQHLDTD*
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mRNA from alignment at tig00000168_pilon:34284..35714-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3290.t1 ID=Gchil3290.t1|Name=Gchil3290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000168_pilon:34284..35714- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTGTGCGCGGCGAGTCGCTTCGAGCACGTGGCGACGGCGGCGGA
GGCAGCCACGCGCGCGCTGCAGCCCATTCGCGTAGTGTTGTTCGTCACGC
GCTTGGACGCGTCGCGCGTGGCGGGTGCCGACGCCGACATGGAGTGGCTC
GCGTGCGTACGTCATGTGTTTACGGATGCCGTGCTGCCGCGTCTGCTCTT
CGTGTTGCTACACGCCGGGTCGTTGCCGCCGCGCGCCCTGTCGTTTGCTG
AGTTTGTACGCTTGCGTTGCGATTTGCTGCACGCGTTGCTGCGTCGTGTG
TTTCCGCCCGTGCACATCGCCGGCGGCGTGGGCATTGCGCACGCCCCGCA
GCTCGTGCGCGACCATCAGCGCCGCCTGCGCCATGATGGCCACGCGCACG
CGCACGCTGCATTCTCGCCCTTGTCGCCCCCGCTGTCGCCGTCGTCCTCG
TCGTCGTCCTCGTCGTCGTCCTCGTCGTCGCCGCCGCCGCTGACGGAGAA
GGCGCTTGCGGAGCTGGAGGCGCGCATCACGCGCGACTGGCTGCGGCAGA
AACCGCCCCCGCAGGTGGACCGACTGCACGCCTGTCTGGTCAACGACGAG
TCCACGGATGCCGCGAGCGCGTCCGCGCTCTCCGACTCGCTCATACACCA
TGTGCATCGCAGCGGTGTATACCCGCTAGACCGCCGCGTCTTCGTGGACC
CGCCGCGTCCGCCCGTCTTCATCCTGCACCTACGCGAGCCCGCGAGCGAC
GCCGCTGCCTTCTCGCAATCAATCCCGCCGCACCCCTTCGTCGTCTCCGT
CCCCGCCCTCATCGACGCCACTCTGCGCGTCGCGCGCCGCCCCCTTTCAG
ACGCCCAACCGTCGCACAACATGCGCTGCGCCCCGCCCCCGCCCGACACC
GCCACGTCTTCTGGTCGTCGTGCGCGCGCGCTGCGTCGCCTGTATCACGC
TTTTGTGCGCGGCGGTGCCAAAACTATGGTCGTCACGTTTGCGCTCACGT
ACGCGGCGTTGGTCGTGTATGCGCGTCTTATCGACCGCCATCGCGCGTGG
AAAAAGGCGCGCTGCGATGATGAGGCGCTGCTGCTCGAGCTGGACGACGC
CGAGTACGAGCGCCTCACCACGCCGGATCCCGGCTCCGACGGCTCGCTCA
CGCTGGAGAGCGCCCCGCCGCCGCCGCCGCCGCCGCCGCAGCACCGCCAG
CAGAAACCTACCTTGTCCGACGCCGAAACGCACTTTTTCGGGCCCGACGG
CCAGAGCCACTCAACGCCGCCGTCGCCGTCGCAGTCGCCGCGCACGTTCG
CCGCCCCGAATAGCACCAAGGGGGGCGACGATGACTCGGACTGGCACAAG
CTCGCCGACGGCGAACGCATCTACAAGCAGAGCTTTACGCTTGAAAACAA
GCACCGCTGGCAGCACCTTGACACTGATTAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:34284..35714-

>Gchil3290.t1 ID=Gchil3290.t1|Name=Gchil3290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00000168_pilon:34284..35714- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTGTGCGCGGCGAGTCGCTTCGAGCACGTGGCGACGGCGGCGGA
GGCAGCCACGCGCGCGCTGCAGCCCATTCGCGTAGTGTTGTTCGTCACGC
GCTTGGACGCGTCGCGCGTGGCGGGTGCCGACGCCGACATGGAGTGGCTC
GCGTGCGTACGTCATGTGTTTACGGATGCCGTGCTGCCGCGTCTGCTCTT
CGTGTTGCTACACGCCGGGTCGTTGCCGCCGCGCGCCCTGTCGTTTGCTG
AGTTTGTACGCTTGCGTTGCGATTTGCTGCACGCGTTGCTGCGTCGTGTG
TTTCCGCCCGTGCACATCGCCGGCGGCGTGGGCATTGCGCACGCCCCGCA
GCTCGTGCGCGACCATCAGCGCCGCCTGCGCCATGATGGCCACGCGCACG
CGCACGCTGCATTCTCGCCCTTGTCGCCCCCGCTGTCGCCGTCGTCCTCG
TCGTCGTCCTCGTCGTCGTCCTCGTCGTCGCCGCCGCCGCTGACGGAGAA
GGCGCTTGCGGAGCTGGAGGCGCGCATCACGCGCGACTGGCTGCGGCAGA
AACCGCCCCCGCAGGTGGACCGACTGCACGCCTGTCTGGTCAACGACGAG
TCCACGGATGCCGCGAGCGCGTCCGCGCTCTCCGACTCGCTCATACACCA
TGTGCATCGCAGCGGTGTATACCCGCTAGACCGCCGCGTCTTCGTGGACC
CGCCGCGTCCGCCCGTCTTCATCCTGCACCTACGCGAGCCCGCGAGCGAC
GCCGCTGCCTTCTCGCAATCAATCCCGCCGCACCCCTTCGTCGTCTCCGT
CCCCGCCCTCATCGACGCCACTCTGCGCGTCGCGCGCCGCCCCCTTTCAG
ACGCCCAACCGTCGCACAACATGCGCTGCGCCCCGCCCCCGCCCGACACC
GCCACGTCTTCTGGTCGTCGTGCGCGCGCGCTGCGTCGCCTGTATCACGC
TTTTGTGCGCGGCGGTGCCAAAACTATGGTCGTCACGTTTGCGCTCACGT
ACGCGGCGTTGGTCGTGTATGCGCGTCTTATCGACCGCCATCGCGCGTGG
AAAAAGGCGCGCTGCGATGATGAGGCGCTGCTGCTCGAGCTGGACGACGC
CGAGTACGAGCGCCTCACCACGCCGGATCCCGGCTCCGACGGCTCGCTCA
CGCTGGAGAGCGCCCCGCCGCCGCCGCCGCCGCCGCCGCAGCACCGCCAG
CAGAAACCTACCTTGTCCGACGCCGAAACGCACTTTTTCGGGCCCGACGG
CCAGAGCCACTCAACGCCGCCGTCGCCGTCGCAGTCGCCGCGCACGTTCG
CCGCCCCGAATAGCACCAAGGGGGGCGACGATGACTCGGACTGGCACAAG
CTCGCCGACGGCGAACGCATCTACAAGCAGAGCTTTACGCTTGAAAACAA
GCACCGCTGGCAGCACCTTGACACTGATTAG
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