Gchil3284.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3284.t1
Unique Name	Gchil3284.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:11893..13089 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7237.FBpp0300597
PFAMs	Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K08957
KEGG Pathway	ko04310,ko04340,ko04341,ko05165,ko05224,ko05225,ko05226,map04310,map04340,map04341,map05165,map05224,map05225,map05226
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0008150,GO:0008152,GO:0008360,GO:0009987,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0022603,GO:0022604,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0065007,GO:0065008,GO:0071704,GO:0098657,GO:0140096,GO:1901564
Evalue	1.27e-40
EggNOG OGs	KOG1164@1\|root,KOG1163@2759\|Eukaryota,39KVS@33154\|Opisthokonta,3CNVH@33208\|Metazoa,3E51W@33213\|Bilateria,41UC5@6656\|Arthropoda,3SHFG@50557\|Insecta,44YCV@7147\|Diptera,45T07@7214\|Drosophilidae
EC	2.7.11.1
Description	It is involved in the biological process described with protein phosphorylation
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3284	Gchil3284	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 11893..13089 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3284.t1.start1	Gchil3284.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 11893..11895 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3284.t1.CDS1	Gchil3284.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 11893..13089 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3284.t1.exon1	Gchil3284.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 11893..13089 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3284.t1.stop1	Gchil3284.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 13087..13089 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3284.t1	Gchil3284.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 11893..13089 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:11893..13089+
coding sequence from alignment at tig00000168_pilon:11893..13089+

mRNA sequence

>Gchil3284.t1 ID=Gchil3284.t1|Name=Gchil3284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp
MEVGAVIADRFTIVQKLVAGGCGILFLVCDPNHKVYVLKAEEASMECCSV
KREIAVYVALGHSFIDSPVLGIPRIFYHGTHRENGLEFYVIVMEYLERSL
GDRMIDNGGTLSLKSVLMVGIQILRILEDIHDRGFVHRDVKPDNILTGLA
ATDCSSLFLCDFGMAKYIPFHSQEESNAKCVYGTLDFASRRALQSKEQGR
CDDLESLGYTLIFLKYGSLPWQGIPFPPDGKQSAAVRGIYYDYIWKDLPP
EMKMFVEYVKTLDVREKPDYDYLRSLLNVPLASAGMTNDGQFEWSPVAEY
LPYSEEDGQMKHRDGVLEEVPGEQTIEQNDPNEDNETDLPSLIPPIASDA
EEEDKFSPVSRTEQHRSSRGVSAALGGKRRTFMRYFSKTIGKLLAVCA*

spliced messenger RNA

>Gchil3284.t1 ID=Gchil3284.t1|Name=Gchil3284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000168_pilon:11893..13089+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTGGGGGCAGTCATTGCTGATCGCTTTACAATTGTTCAAAAGCT
TGTGGCAGGGGGATGCGGGATATTATTCCTAGTGTGCGATCCGAACCACA
AGGTGTATGTCTTGAAAGCAGAAGAGGCAAGCATGGAATGTTGTTCCGTC
AAGAGAGAGATAGCGGTCTACGTCGCCCTAGGACACAGTTTCATCGATTC
ACCTGTGTTGGGTATTCCAAGAATCTTCTACCATGGTACTCATAGAGAAA
ACGGGCTTGAGTTCTACGTCATCGTCATGGAGTACTTGGAACGATCGCTC
GGCGACCGAATGATTGACAACGGAGGGACTTTATCTCTCAAGAGTGTTTT
AATGGTAGGGATTCAAATTCTGCGAATTCTCGAAGATATCCATGACAGAG
GTTTTGTTCACAGAGACGTAAAGCCGGACAACATTCTCACGGGTCTTGCT
GCCACCGACTGCTCATCTCTCTTTCTTTGTGATTTTGGTATGGCAAAATA
TATACCGTTTCACTCCCAAGAAGAATCAAATGCCAAGTGCGTGTACGGAA
CACTCGATTTTGCTTCCAGAAGAGCTTTGCAAAGCAAGGAACAAGGACGG
TGTGATGATCTAGAATCATTGGGATATACCCTCATCTTTCTCAAGTATGG
TTCGCTCCCATGGCAAGGCATTCCATTTCCCCCAGACGGAAAACAAAGCG
CAGCGGTTCGCGGAATATACTATGACTACATTTGGAAAGATCTTCCCCCG
GAAATGAAGATGTTTGTTGAGTATGTCAAAACTCTGGATGTAAGAGAAAA
GCCAGATTACGATTACTTGAGATCTCTCCTGAATGTACCATTAGCTTCAG
CAGGAATGACGAATGATGGACAGTTTGAATGGTCTCCGGTAGCGGAATAT
CTTCCATATTCAGAAGAGGATGGCCAAATGAAGCACCGCGATGGGGTACT
TGAGGAAGTTCCTGGTGAACAAACTATTGAGCAAAACGATCCCAATGAAG
ACAATGAGACGGATTTGCCGTCACTCATACCTCCAATTGCATCTGATGCC
GAAGAAGAGGACAAATTCTCTCCTGTTTCACGCACGGAGCAGCACAGGAG
TTCTCGAGGTGTGAGCGCTGCGCTTGGTGGTAAGCGACGTACATTTATGA
GGTATTTTTCGAAAACCATCGGTAAGCTTCTCGCGGTTTGTGCCTGA

protein sequence of Gchil3284.t1

>Gchil3284.t1 ID=Gchil3284.t1|Name=Gchil3284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=399bp
MEVGAVIADRFTIVQKLVAGGCGILFLVCDPNHKVYVLKAEEASMECCSV
KREIAVYVALGHSFIDSPVLGIPRIFYHGTHRENGLEFYVIVMEYLERSL
GDRMIDNGGTLSLKSVLMVGIQILRILEDIHDRGFVHRDVKPDNILTGLA
ATDCSSLFLCDFGMAKYIPFHSQEESNAKCVYGTLDFASRRALQSKEQGR
CDDLESLGYTLIFLKYGSLPWQGIPFPPDGKQSAAVRGIYYDYIWKDLPP
EMKMFVEYVKTLDVREKPDYDYLRSLLNVPLASAGMTNDGQFEWSPVAEY
LPYSEEDGQMKHRDGVLEEVPGEQTIEQNDPNEDNETDLPSLIPPIASDA
EEEDKFSPVSRTEQHRSSRGVSAALGGKRRTFMRYFSKTIGKLLAVCA*

mRNA from alignment at tig00000168_pilon:11893..13089+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3284.t1 ID=Gchil3284.t1|Name=Gchil3284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000168_pilon:11893..13089+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGTGGGGGCAGTCATTGCTGATCGCTTTACAATTGTTCAAAAGCT
TGTGGCAGGGGGATGCGGGATATTATTCCTAGTGTGCGATCCGAACCACA
AGGTGTATGTCTTGAAAGCAGAAGAGGCAAGCATGGAATGTTGTTCCGTC
AAGAGAGAGATAGCGGTCTACGTCGCCCTAGGACACAGTTTCATCGATTC
ACCTGTGTTGGGTATTCCAAGAATCTTCTACCATGGTACTCATAGAGAAA
ACGGGCTTGAGTTCTACGTCATCGTCATGGAGTACTTGGAACGATCGCTC
GGCGACCGAATGATTGACAACGGAGGGACTTTATCTCTCAAGAGTGTTTT
AATGGTAGGGATTCAAATTCTGCGAATTCTCGAAGATATCCATGACAGAG
GTTTTGTTCACAGAGACGTAAAGCCGGACAACATTCTCACGGGTCTTGCT
GCCACCGACTGCTCATCTCTCTTTCTTTGTGATTTTGGTATGGCAAAATA
TATACCGTTTCACTCCCAAGAAGAATCAAATGCCAAGTGCGTGTACGGAA
CACTCGATTTTGCTTCCAGAAGAGCTTTGCAAAGCAAGGAACAAGGACGG
TGTGATGATCTAGAATCATTGGGATATACCCTCATCTTTCTCAAGTATGG
TTCGCTCCCATGGCAAGGCATTCCATTTCCCCCAGACGGAAAACAAAGCG
CAGCGGTTCGCGGAATATACTATGACTACATTTGGAAAGATCTTCCCCCG
GAAATGAAGATGTTTGTTGAGTATGTCAAAACTCTGGATGTAAGAGAAAA
GCCAGATTACGATTACTTGAGATCTCTCCTGAATGTACCATTAGCTTCAG
CAGGAATGACGAATGATGGACAGTTTGAATGGTCTCCGGTAGCGGAATAT
CTTCCATATTCAGAAGAGGATGGCCAAATGAAGCACCGCGATGGGGTACT
TGAGGAAGTTCCTGGTGAACAAACTATTGAGCAAAACGATCCCAATGAAG
ACAATGAGACGGATTTGCCGTCACTCATACCTCCAATTGCATCTGATGCC
GAAGAAGAGGACAAATTCTCTCCTGTTTCACGCACGGAGCAGCACAGGAG
TTCTCGAGGTGTGAGCGCTGCGCTTGGTGGTAAGCGACGTACATTTATGA
GGTATTTTTCGAAAACCATCGGTAAGCTTCTCGCGGTTTGTGCCTGA

Coding sequence (CDS) from alignment at tig00000168_pilon:11893..13089+

>Gchil3284.t1 ID=Gchil3284.t1|Name=Gchil3284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000168_pilon:11893..13089+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGTGGGGGCAGTCATTGCTGATCGCTTTACAATTGTTCAAAAGCT
TGTGGCAGGGGGATGCGGGATATTATTCCTAGTGTGCGATCCGAACCACA
AGGTGTATGTCTTGAAAGCAGAAGAGGCAAGCATGGAATGTTGTTCCGTC
AAGAGAGAGATAGCGGTCTACGTCGCCCTAGGACACAGTTTCATCGATTC
ACCTGTGTTGGGTATTCCAAGAATCTTCTACCATGGTACTCATAGAGAAA
ACGGGCTTGAGTTCTACGTCATCGTCATGGAGTACTTGGAACGATCGCTC
GGCGACCGAATGATTGACAACGGAGGGACTTTATCTCTCAAGAGTGTTTT
AATGGTAGGGATTCAAATTCTGCGAATTCTCGAAGATATCCATGACAGAG
GTTTTGTTCACAGAGACGTAAAGCCGGACAACATTCTCACGGGTCTTGCT
GCCACCGACTGCTCATCTCTCTTTCTTTGTGATTTTGGTATGGCAAAATA
TATACCGTTTCACTCCCAAGAAGAATCAAATGCCAAGTGCGTGTACGGAA
CACTCGATTTTGCTTCCAGAAGAGCTTTGCAAAGCAAGGAACAAGGACGG
TGTGATGATCTAGAATCATTGGGATATACCCTCATCTTTCTCAAGTATGG
TTCGCTCCCATGGCAAGGCATTCCATTTCCCCCAGACGGAAAACAAAGCG
CAGCGGTTCGCGGAATATACTATGACTACATTTGGAAAGATCTTCCCCCG
GAAATGAAGATGTTTGTTGAGTATGTCAAAACTCTGGATGTAAGAGAAAA
GCCAGATTACGATTACTTGAGATCTCTCCTGAATGTACCATTAGCTTCAG
CAGGAATGACGAATGATGGACAGTTTGAATGGTCTCCGGTAGCGGAATAT
CTTCCATATTCAGAAGAGGATGGCCAAATGAAGCACCGCGATGGGGTACT
TGAGGAAGTTCCTGGTGAACAAACTATTGAGCAAAACGATCCCAATGAAG
ACAATGAGACGGATTTGCCGTCACTCATACCTCCAATTGCATCTGATGCC
GAAGAAGAGGACAAATTCTCTCCTGTTTCACGCACGGAGCAGCACAGGAG
TTCTCGAGGTGTGAGCGCTGCGCTTGGTGGTAAGCGACGTACATTTATGA
GGTATTTTTCGAAAACCATCGGTAAGCTTCTCGCGGTTTGTGCCTGA