Gchil3280.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3280.t1
Unique NameGchil3280.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1308833..1309488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_004002-tr
Preferred nameNAA30
PFAMsAcetyltransf_1
Max annot lvl33208|Metazoa
KEGG koko:K00670
GOsGO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010467,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018205,GO:0018206,GO:0018393,GO:0018394,GO:0019538,GO:0031248,GO:0031365,GO:0031414,GO:0031417,GO:0032501,GO:0032502,GO:0032991,GO:0034212,GO:0036211,GO:0040024,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0051276,GO:0051604,GO:0071704,GO:0071840,GO:1901564,GO:1902493,GO:1902494,GO:1990234
Evalue9.77e-60
EggNOG OGsCOG0456@1|root,KOG3139@2759|Eukaryota,38I1W@33154|Opisthokonta,3BKJ9@33208|Metazoa,3CV14@33213|Bilateria
EC2.3.1.256
DescriptionN-alpha-acetyltransferase 30, NatC catalytic subunit
COG categoryS
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3280Gchil3280Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1308833..1309488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3280.t1Gchil3280.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1308833..1309488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3280.t1.stop1Gchil3280.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1308833..1308835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3280.t1.CDS1Gchil3280.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1308833..1309138 -
Gchil3280.t1.CDS2Gchil3280.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1309223..1309388 -
Gchil3280.t1.CDS3Gchil3280.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1309457..1309488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3280.t1.exon1Gchil3280.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1308833..1309138 -
Gchil3280.t1.exon2Gchil3280.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1309223..1309388 -
Gchil3280.t1.exon3Gchil3280.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1309457..1309488 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3280.t1.intron1Gchil3280.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1309139..1309222 -
Gchil3280.t1.intron2Gchil3280.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1309389..1309456 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3280.t1.start1Gchil3280.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1309486..1309488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3280.t1 ID=Gchil3280.t1|Name=Gchil3280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MEAADQVLIIPYHDENHLALIQPLIDKDLSEPYSIFTYRYFISQWPHLCF
LAMRDQQCVGAIVCKLESHKRTIMRGYIAMLVVRHDCRKLGLGSRLVSTA
IDAMITHDCHEVTLEAEVTNKGALRLYQNLGFIRDKRLEKYYLNGNDAFR
LRLKLRATPPVATTKYL*
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spliced messenger RNA

>Gchil3280.t1 ID=Gchil3280.t1|Name=Gchil3280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004382_pilon:1308833..1309488- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCGCGGACCAGGTGCTGATCATCCCATATCACGACGAGAACCA
TCTCGCACTCATACAGCCGCTTATCGACAAAGATCTATCTGAGCCGTACT
CCATCTTCACCTATCGTTATTTCATTTCACAATGGCCCCATCTCTGCTTC
CTTGCCATGCGCGACCAGCAGTGTGTCGGCGCAATAGTGTGCAAACTGGA
ATCGCACAAGCGCACTATTATGCGCGGCTACATAGCAATGCTCGTCGTGC
GCCATGACTGTCGCAAACTTGGACTGGGCTCAAGACTGGTTTCGACAGCG
ATCGACGCAATGATAACCCATGACTGTCATGAAGTGACGCTAGAGGCTGA
AGTGACCAACAAAGGCGCCTTGCGACTCTATCAAAACCTCGGCTTCATCA
GAGACAAGCGTCTCGAAAAGTATTACTTGAACGGCAATGATGCATTCCGT
CTCAGATTGAAGCTCAGGGCTACCCCTCCTGTAGCAACAACTAAATATCT
GTAG
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protein sequence of Gchil3280.t1

>Gchil3280.t1 ID=Gchil3280.t1|Name=Gchil3280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MEAADQVLIIPYHDENHLALIQPLIDKDLSEPYSIFTYRYFISQWPHLCF
LAMRDQQCVGAIVCKLESHKRTIMRGYIAMLVVRHDCRKLGLGSRLVSTA
IDAMITHDCHEVTLEAEVTNKGALRLYQNLGFIRDKRLEKYYLNGNDAFR
LRLKLRATPPVATTKYL*
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mRNA from alignment at tig00004382_pilon:1308833..1309488-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3280.t1 ID=Gchil3280.t1|Name=Gchil3280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=656bp|location=Sequence derived from alignment at tig00004382_pilon:1308833..1309488- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGCCGCGGACCAGGTGCTGATCATCCCGTACGTTTCTTTTTCCTA
CTTGTCCTCCAACTGAGTTTACGCGCGTCTCCACTAACCGTCGCCCAAAG
ATATCACGACGAGAACCATCTCGCACTCATACAGCCGCTTATCGACAAAG
ATCTATCTGAGCCGTACTCCATCTTCACCTATCGTTATTTCATTTCACAA
TGGCCCCATCTCTGCTTCCTTGCCATGCGCGACCAGCAGTGTGTCGGCGC
AATAGTGTGCAAACTGGTAAGATTTGATACCTGTACAGCGAACGCACCCT
CTGGGCTTCCTCGCACCCACATCACCTACTGACATGACTACTGAACGAAG
GAATCGCACAAGCGCACTATTATGCGCGGCTACATAGCAATGCTCGTCGT
GCGCCATGACTGTCGCAAACTTGGACTGGGCTCAAGACTGGTTTCGACAG
CGATCGACGCAATGATAACCCATGACTGTCATGAAGTGACGCTAGAGGCT
GAAGTGACCAACAAAGGCGCCTTGCGACTCTATCAAAACCTCGGCTTCAT
CAGAGACAAGCGTCTCGAAAAGTATTACTTGAACGGCAATGATGCATTCC
GTCTCAGATTGAAGCTCAGGGCTACCCCTCCTGTAGCAACAACTAAATAT
CTGTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:1308833..1309488-

>Gchil3280.t1 ID=Gchil3280.t1|Name=Gchil3280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00004382_pilon:1308833..1309488- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGCCGCGGACCAGGTGCTGATCATCCCATATCACGACGAGAACCA
TCTCGCACTCATACAGCCGCTTATCGACAAAGATCTATCTGAGCCGTACT
CCATCTTCACCTATCGTTATTTCATTTCACAATGGCCCCATCTCTGCTTC
CTTGCCATGCGCGACCAGCAGTGTGTCGGCGCAATAGTGTGCAAACTGGA
ATCGCACAAGCGCACTATTATGCGCGGCTACATAGCAATGCTCGTCGTGC
GCCATGACTGTCGCAAACTTGGACTGGGCTCAAGACTGGTTTCGACAGCG
ATCGACGCAATGATAACCCATGACTGTCATGAAGTGACGCTAGAGGCTGA
AGTGACCAACAAAGGCGCCTTGCGACTCTATCAAAACCTCGGCTTCATCA
GAGACAAGCGTCTCGAAAAGTATTACTTGAACGGCAATGATGCATTCCGT
CTCAGATTGAAGCTCAGGGCTACCCCTCCTGTAGCAACAACTAAATATCT
GTAG
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