Gchil3277.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3277.t1
Unique NameGchil3277.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1304151..1305039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3277Gchil3277Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1304151..1305039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3277.t1Gchil3277.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1304151..1305039 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3277.t1.start1Gchil3277.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1304151..1304153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3277.t1.CDS1Gchil3277.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1304151..1304876 +
Gchil3277.t1.CDS2Gchil3277.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1304971..1305039 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3277.t1.exon1Gchil3277.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1304151..1304876 +
Gchil3277.t1.exon2Gchil3277.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1304971..1305039 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3277.t1.intron1Gchil3277.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1304877..1304970 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3277.t1.stop1Gchil3277.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1305037..1305039 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3277.t1 ID=Gchil3277.t1|Name=Gchil3277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=265bp
MDSSGTVRRMSSSDIVPAFEDPPSAHTQKEIISDGFRMITRTLREPFFEL
YCEAELESSQFIVQFDVFPFSAGGQRLAFQGRMLERLENGRLKSHMPVVV
KLQMATSDYLGRSLSERTQVCDVEADNTVRKHDITSSVLEKWCALGTNKK
VDVLPAAKIVVTRECSVDQISQERFPMLQHLFKKLSLDAVLYSGAVGTVE
EYMEGRFTKFLNNDGENNSRVRANFPAAFAHWSWVDSGGTIMTLGLWGWK
NSLRNTGATDCATT*
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spliced messenger RNA

>Gchil3277.t1 ID=Gchil3277.t1|Name=Gchil3277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004382_pilon:1304151..1305039+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCATCCGGTACGGTAAGAAGAATGTCGTCGTCGGATATTGTTCC
AGCTTTTGAGGACCCTCCATCTGCACACACTCAAAAAGAAATCATCAGCG
ATGGGTTCCGCATGATAACCAGAACGTTGCGCGAACCGTTTTTCGAACTG
TACTGCGAGGCTGAACTAGAATCATCACAATTTATTGTACAGTTTGATGT
GTTTCCTTTCTCTGCTGGGGGGCAACGACTGGCATTTCAGGGACGCATGC
TCGAGCGGCTGGAGAATGGGCGGCTGAAGAGCCATATGCCGGTGGTAGTG
AAGCTTCAAATGGCAACGAGCGACTACTTGGGCCGTTCTTTGAGCGAAAG
GACACAAGTATGTGACGTGGAAGCAGACAACACAGTGCGCAAACATGACA
TAACGTCGAGCGTACTTGAGAAGTGGTGCGCTCTGGGGACCAACAAGAAG
GTAGATGTGCTGCCCGCGGCGAAGATAGTGGTGACTCGGGAGTGCAGCGT
GGATCAGATATCGCAGGAAAGATTTCCCATGCTTCAGCACTTATTCAAGA
AGCTCTCGTTGGACGCTGTGCTGTACAGCGGCGCGGTGGGTACGGTGGAA
GAATACATGGAAGGGCGGTTTACCAAGTTCTTGAATAACGACGGTGAAAA
CAACAGTCGTGTGCGCGCGAATTTTCCGGCGGCGTTTGCACACTGGTCGT
GGGTTGACTCCGGCGGAACGATTATGACCTTGGGATTATGGGGGTGGAAG
AATTCTTTGCGAAACACAGGTGCAACGGACTGTGCAACGACTTGA
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protein sequence of Gchil3277.t1

>Gchil3277.t1 ID=Gchil3277.t1|Name=Gchil3277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MDSSGTVRRMSSSDIVPAFEDPPSAHTQKEIISDGFRMITRTLREPFFEL
YCEAELESSQFIVQFDVFPFSAGGQRLAFQGRMLERLENGRLKSHMPVVV
KLQMATSDYLGRSLSERTQVCDVEADNTVRKHDITSSVLEKWCALGTNKK
VDVLPAAKIVVTRECSVDQISQERFPMLQHLFKKLSLDAVLYSGAVGTVE
EYMEGRFTKFLNNDGENNSRVRANFPAAFAHWSWVDSGGTIMTLGLWGWK
NSLRNTGATDCATT*
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mRNA from alignment at tig00004382_pilon:1304151..1305039+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3277.t1 ID=Gchil3277.t1|Name=Gchil3277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=889bp|location=Sequence derived from alignment at tig00004382_pilon:1304151..1305039+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCATCCGGTACGGTAAGAAGAATGTCGTCGTCGGATATTGTTCC
AGCTTTTGAGGACCCTCCATCTGCACACACTCAAAAAGAAATCATCAGCG
ATGGGTTCCGCATGATAACCAGAACGTTGCGCGAACCGTTTTTCGAACTG
TACTGCGAGGCTGAACTAGAATCATCACAATTTATTGTACAGTTTGATGT
GTTTCCTTTCTCTGCTGGGGGGCAACGACTGGCATTTCAGGGACGCATGC
TCGAGCGGCTGGAGAATGGGCGGCTGAAGAGCCATATGCCGGTGGTAGTG
AAGCTTCAAATGGCAACGAGCGACTACTTGGGCCGTTCTTTGAGCGAAAG
GACACAAGTATGTGACGTGGAAGCAGACAACACAGTGCGCAAACATGACA
TAACGTCGAGCGTACTTGAGAAGTGGTGCGCTCTGGGGACCAACAAGAAG
GTAGATGTGCTGCCCGCGGCGAAGATAGTGGTGACTCGGGAGTGCAGCGT
GGATCAGATATCGCAGGAAAGATTTCCCATGCTTCAGCACTTATTCAAGA
AGCTCTCGTTGGACGCTGTGCTGTACAGCGGCGCGGTGGGTACGGTGGAA
GAATACATGGAAGGGCGGTTTACCAAGTTCTTGAATAACGACGGTGAAAA
CAACAGTCGTGTGCGCGCGAATTTTCCGGCGGCGTTTGCACACTGGTCGT
GGGTTGACTCCGGCGGAACGATTATGGTAAGTGACATTCAGGGGGTGCGC
ACTGGGAACGGATACGTGCTGACCGACCCGTGCGTGCACTCTATAAGCGG
AGCGACATACGGGGCAACAGACCTTGGGATTATGGGGGTGGAAGAATTCT
TTGCGAAACACAGGTGCAACGGACTGTGCAACGACTTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1304151..1305039+

>Gchil3277.t1 ID=Gchil3277.t1|Name=Gchil3277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00004382_pilon:1304151..1305039+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCATCCGGTACGGTAAGAAGAATGTCGTCGTCGGATATTGTTCC
AGCTTTTGAGGACCCTCCATCTGCACACACTCAAAAAGAAATCATCAGCG
ATGGGTTCCGCATGATAACCAGAACGTTGCGCGAACCGTTTTTCGAACTG
TACTGCGAGGCTGAACTAGAATCATCACAATTTATTGTACAGTTTGATGT
GTTTCCTTTCTCTGCTGGGGGGCAACGACTGGCATTTCAGGGACGCATGC
TCGAGCGGCTGGAGAATGGGCGGCTGAAGAGCCATATGCCGGTGGTAGTG
AAGCTTCAAATGGCAACGAGCGACTACTTGGGCCGTTCTTTGAGCGAAAG
GACACAAGTATGTGACGTGGAAGCAGACAACACAGTGCGCAAACATGACA
TAACGTCGAGCGTACTTGAGAAGTGGTGCGCTCTGGGGACCAACAAGAAG
GTAGATGTGCTGCCCGCGGCGAAGATAGTGGTGACTCGGGAGTGCAGCGT
GGATCAGATATCGCAGGAAAGATTTCCCATGCTTCAGCACTTATTCAAGA
AGCTCTCGTTGGACGCTGTGCTGTACAGCGGCGCGGTGGGTACGGTGGAA
GAATACATGGAAGGGCGGTTTACCAAGTTCTTGAATAACGACGGTGAAAA
CAACAGTCGTGTGCGCGCGAATTTTCCGGCGGCGTTTGCACACTGGTCGT
GGGTTGACTCCGGCGGAACGATTATGACCTTGGGATTATGGGGGTGGAAG
AATTCTTTGCGAAACACAGGTGCAACGGACTGTGCAACGACTTGA
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