Gchil3276.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3276.t1
Unique NameGchil3276.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1301620..1303273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3276Gchil3276Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1301620..1303273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3276.t1Gchil3276.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1301620..1303273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3276.t1.stop1Gchil3276.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1301620..1301622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3276.t1.CDS1Gchil3276.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1301620..1302542 -
Gchil3276.t1.CDS2Gchil3276.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1302649..1303273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3276.t1.exon1Gchil3276.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1301620..1302542 -
Gchil3276.t1.exon2Gchil3276.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1302649..1303273 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3276.t1.intron1Gchil3276.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1302543..1302648 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3276.t1.start1Gchil3276.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1303271..1303273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3276.t1 ID=Gchil3276.t1|Name=Gchil3276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=516bp
MQALSTRVQRHAVPLKPVDVSDSYGFKTALYVVNALSKRTGESAYTEQEA
RVKVANLIQDSDVERLSLLLRQWYSEDYDEAVLKQLLPELANRILTNDVS
RYDQRAIVNDIEWSALATAFKCCIAVKMVRSESTKGNGWKIAVPTPQIFG
QSATRADEDTQCVFVVCQVVHGISRYVALIPNSQPIFKPGRALVASKSAY
EARTGKQKVETAISTNTETSEVREVNEATEAKSESEEPQSYQHPIRLQRL
QTRRDRSFKMERKVSFNDESRTSGESFRKVEAHAKTAGAAATGAAAEEAA
ADSAAAGNATAVKAATERAAAEKAAAEKAAAEKAAAEKAAAEKAASEKAA
AERAASEKAAAERAASEDAAAADATGVRAAAVEETSMEVTTGQATTGQAA
ALKAAGTDTTATQGGTETDGEDGTVTEPASSEGGSEAGDSSKVPIKAVGY
IDEQLLLNMDDLKLLSGHISLASEGERSANMEPSFSEGSAMYEMRLLFQK
AFPETTRRGGANFLN*
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spliced messenger RNA

>Gchil3276.t1 ID=Gchil3276.t1|Name=Gchil3276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00004382_pilon:1301620..1303273- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCATTATCGACTCGAGTGCAACGCCATGCCGTCCCGTTGAAACC
TGTAGATGTGTCCGATAGTTATGGCTTCAAGACTGCACTCTACGTGGTTA
ATGCTCTCAGCAAGCGAACTGGAGAATCCGCGTACACGGAGCAAGAAGCA
CGAGTGAAAGTGGCAAATTTGATCCAAGACAGCGACGTGGAAAGGCTATC
GTTGCTGCTTCGTCAATGGTACTCAGAAGACTACGATGAGGCGGTGCTCA
AGCAACTGCTGCCCGAGTTGGCAAACCGCATTCTAACTAACGACGTGTCG
AGATATGATCAACGAGCCATTGTGAATGACATTGAATGGAGCGCGCTGGC
AACGGCTTTCAAGTGCTGCATTGCGGTCAAGATGGTGAGGAGCGAATCTA
CAAAGGGAAACGGATGGAAGATTGCAGTGCCAACTCCTCAGATATTCGGA
CAAAGCGCCACAAGAGCAGATGAAGACACGCAGTGCGTGTTCGTGGTGTG
CCAAGTGGTGCATGGGATTTCAAGGTATGTGGCACTGATTCCGAACAGCC
AGCCGATTTTTAAGCCCGGGCGTGCTCTCGTAGCCAGCAAGTCGGCGTAC
GAAGCGAGAACTGGGAAGCAAAAAGTGGAAACTGCAATTTCGACGAACAC
TGAAACGAGCGAAGTGAGGGAGGTGAACGAGGCCACTGAAGCTAAGAGTG
AAAGCGAGGAGCCTCAGTCCTACCAGCATCCGATCCGTCTGCAGCGGCTT
CAGACGCGACGGGATAGGTCGTTCAAGATGGAGAGAAAGGTTTCATTCAA
CGATGAGAGCAGAACGAGTGGCGAGAGCTTCCGCAAGGTTGAGGCGCACG
CCAAAACCGCAGGCGCAGCAGCTACGGGCGCAGCCGCCGAGGAAGCAGCA
GCCGACAGTGCCGCAGCAGGGAACGCCACAGCCGTGAAAGCCGCCACCGA
GAGGGCTGCAGCCGAGAAGGCCGCAGCCGAGAAGGCCGCAGCCGAGAAGG
CCGCAGCCGAGAAGGCCGCAGCCGAGAAGGCCGCATCCGAGAAGGCTGCA
GCCGAGAGGGCCGCATCCGAGAAGGCTGCAGCCGAGAGGGCCGCATCCGA
GGACGCAGCAGCTGCAGACGCGACAGGCGTGAGGGCAGCAGCTGTGGAGG
AGACAAGTATGGAGGTGACAACTGGGCAGGCGACAACTGGGCAAGCTGCA
GCTTTGAAGGCAGCAGGCACGGACACGACAGCCACTCAAGGCGGGACAGA
GACGGACGGGGAGGATGGGACGGTAACAGAGCCGGCAAGCAGCGAGGGTG
GATCGGAAGCGGGCGACAGCAGCAAGGTGCCGATAAAGGCGGTGGGGTAC
ATAGACGAGCAGCTTCTGCTCAACATGGACGACCTCAAGCTACTGAGCGG
ACACATCTCGCTGGCAAGCGAGGGCGAGCGCAGCGCCAACATGGAGCCGT
CCTTCAGCGAGGGGTCGGCGATGTATGAGATGCGGCTCCTGTTCCAGAAA
GCATTCCCGGAGACGACACGTCGGGGCGGCGCCAATTTCCTTAACTAA
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protein sequence of Gchil3276.t1

>Gchil3276.t1 ID=Gchil3276.t1|Name=Gchil3276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=516bp
MQALSTRVQRHAVPLKPVDVSDSYGFKTALYVVNALSKRTGESAYTEQEA
RVKVANLIQDSDVERLSLLLRQWYSEDYDEAVLKQLLPELANRILTNDVS
RYDQRAIVNDIEWSALATAFKCCIAVKMVRSESTKGNGWKIAVPTPQIFG
QSATRADEDTQCVFVVCQVVHGISRYVALIPNSQPIFKPGRALVASKSAY
EARTGKQKVETAISTNTETSEVREVNEATEAKSESEEPQSYQHPIRLQRL
QTRRDRSFKMERKVSFNDESRTSGESFRKVEAHAKTAGAAATGAAAEEAA
ADSAAAGNATAVKAATERAAAEKAAAEKAAAEKAAAEKAAAEKAASEKAA
AERAASEKAAAERAASEDAAAADATGVRAAAVEETSMEVTTGQATTGQAA
ALKAAGTDTTATQGGTETDGEDGTVTEPASSEGGSEAGDSSKVPIKAVGY
IDEQLLLNMDDLKLLSGHISLASEGERSANMEPSFSEGSAMYEMRLLFQK
AFPETTRRGGANFLN*
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mRNA from alignment at tig00004382_pilon:1301620..1303273-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3276.t1 ID=Gchil3276.t1|Name=Gchil3276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1654bp|location=Sequence derived from alignment at tig00004382_pilon:1301620..1303273- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGCATTATCGACTCGAGTGCAACGCCATGCCGTCCCGTTGAAACC
TGTAGATGTGTCCGATAGTTATGGCTTCAAGACTGCACTCTACGTGGTTA
ATGCTCTCAGCAAGCGAACTGGAGAATCCGCGTACACGGAGCAAGAAGCA
CGAGTGAAAGTGGCAAATTTGATCCAAGACAGCGACGTGGAAAGGCTATC
GTTGCTGCTTCGTCAATGGTACTCAGAAGACTACGATGAGGCGGTGCTCA
AGCAACTGCTGCCCGAGTTGGCAAACCGCATTCTAACTAACGACGTGTCG
AGATATGATCAACGAGCCATTGTGAATGACATTGAATGGAGCGCGCTGGC
AACGGCTTTCAAGTGCTGCATTGCGGTCAAGATGGTGAGGAGCGAATCTA
CAAAGGGAAACGGATGGAAGATTGCAGTGCCAACTCCTCAGATATTCGGA
CAAAGCGCCACAAGAGCAGATGAAGACACGCAGTGCGTGTTCGTGGTGTG
CCAAGTGGTGCATGGGATTTCAAGGTATGTGGCACTGATTCCGAACAGCC
AGCCGATTTTTAAGCCCGGGCGTGCTCTCGTAGCCAGCAAGTCGGCGTAC
GAAGCGAGAACTGGGAAGCAAAAAGGTAAGCAATTGGTGTGTGCGATGTT
GAGCGAAAAGATGCGTGCGTCGCAAGAATGGATCGAGTGAACTGACAAAG
CTGTGGACTTTGGATGCGTGTTGTGACACAGTGGAAACTGCAATTTCGAC
GAACACTGAAACGAGCGAAGTGAGGGAGGTGAACGAGGCCACTGAAGCTA
AGAGTGAAAGCGAGGAGCCTCAGTCCTACCAGCATCCGATCCGTCTGCAG
CGGCTTCAGACGCGACGGGATAGGTCGTTCAAGATGGAGAGAAAGGTTTC
ATTCAACGATGAGAGCAGAACGAGTGGCGAGAGCTTCCGCAAGGTTGAGG
CGCACGCCAAAACCGCAGGCGCAGCAGCTACGGGCGCAGCCGCCGAGGAA
GCAGCAGCCGACAGTGCCGCAGCAGGGAACGCCACAGCCGTGAAAGCCGC
CACCGAGAGGGCTGCAGCCGAGAAGGCCGCAGCCGAGAAGGCCGCAGCCG
AGAAGGCCGCAGCCGAGAAGGCCGCAGCCGAGAAGGCCGCATCCGAGAAG
GCTGCAGCCGAGAGGGCCGCATCCGAGAAGGCTGCAGCCGAGAGGGCCGC
ATCCGAGGACGCAGCAGCTGCAGACGCGACAGGCGTGAGGGCAGCAGCTG
TGGAGGAGACAAGTATGGAGGTGACAACTGGGCAGGCGACAACTGGGCAA
GCTGCAGCTTTGAAGGCAGCAGGCACGGACACGACAGCCACTCAAGGCGG
GACAGAGACGGACGGGGAGGATGGGACGGTAACAGAGCCGGCAAGCAGCG
AGGGTGGATCGGAAGCGGGCGACAGCAGCAAGGTGCCGATAAAGGCGGTG
GGGTACATAGACGAGCAGCTTCTGCTCAACATGGACGACCTCAAGCTACT
GAGCGGACACATCTCGCTGGCAAGCGAGGGCGAGCGCAGCGCCAACATGG
AGCCGTCCTTCAGCGAGGGGTCGGCGATGTATGAGATGCGGCTCCTGTTC
CAGAAAGCATTCCCGGAGACGACACGTCGGGGCGGCGCCAATTTCCTTAA
CTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1301620..1303273-

>Gchil3276.t1 ID=Gchil3276.t1|Name=Gchil3276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00004382_pilon:1301620..1303273- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGCATTATCGACTCGAGTGCAACGCCATGCCGTCCCGTTGAAACC
TGTAGATGTGTCCGATAGTTATGGCTTCAAGACTGCACTCTACGTGGTTA
ATGCTCTCAGCAAGCGAACTGGAGAATCCGCGTACACGGAGCAAGAAGCA
CGAGTGAAAGTGGCAAATTTGATCCAAGACAGCGACGTGGAAAGGCTATC
GTTGCTGCTTCGTCAATGGTACTCAGAAGACTACGATGAGGCGGTGCTCA
AGCAACTGCTGCCCGAGTTGGCAAACCGCATTCTAACTAACGACGTGTCG
AGATATGATCAACGAGCCATTGTGAATGACATTGAATGGAGCGCGCTGGC
AACGGCTTTCAAGTGCTGCATTGCGGTCAAGATGGTGAGGAGCGAATCTA
CAAAGGGAAACGGATGGAAGATTGCAGTGCCAACTCCTCAGATATTCGGA
CAAAGCGCCACAAGAGCAGATGAAGACACGCAGTGCGTGTTCGTGGTGTG
CCAAGTGGTGCATGGGATTTCAAGGTATGTGGCACTGATTCCGAACAGCC
AGCCGATTTTTAAGCCCGGGCGTGCTCTCGTAGCCAGCAAGTCGGCGTAC
GAAGCGAGAACTGGGAAGCAAAAAGTGGAAACTGCAATTTCGACGAACAC
TGAAACGAGCGAAGTGAGGGAGGTGAACGAGGCCACTGAAGCTAAGAGTG
AAAGCGAGGAGCCTCAGTCCTACCAGCATCCGATCCGTCTGCAGCGGCTT
CAGACGCGACGGGATAGGTCGTTCAAGATGGAGAGAAAGGTTTCATTCAA
CGATGAGAGCAGAACGAGTGGCGAGAGCTTCCGCAAGGTTGAGGCGCACG
CCAAAACCGCAGGCGCAGCAGCTACGGGCGCAGCCGCCGAGGAAGCAGCA
GCCGACAGTGCCGCAGCAGGGAACGCCACAGCCGTGAAAGCCGCCACCGA
GAGGGCTGCAGCCGAGAAGGCCGCAGCCGAGAAGGCCGCAGCCGAGAAGG
CCGCAGCCGAGAAGGCCGCAGCCGAGAAGGCCGCATCCGAGAAGGCTGCA
GCCGAGAGGGCCGCATCCGAGAAGGCTGCAGCCGAGAGGGCCGCATCCGA
GGACGCAGCAGCTGCAGACGCGACAGGCGTGAGGGCAGCAGCTGTGGAGG
AGACAAGTATGGAGGTGACAACTGGGCAGGCGACAACTGGGCAAGCTGCA
GCTTTGAAGGCAGCAGGCACGGACACGACAGCCACTCAAGGCGGGACAGA
GACGGACGGGGAGGATGGGACGGTAACAGAGCCGGCAAGCAGCGAGGGTG
GATCGGAAGCGGGCGACAGCAGCAAGGTGCCGATAAAGGCGGTGGGGTAC
ATAGACGAGCAGCTTCTGCTCAACATGGACGACCTCAAGCTACTGAGCGG
ACACATCTCGCTGGCAAGCGAGGGCGAGCGCAGCGCCAACATGGAGCCGT
CCTTCAGCGAGGGGTCGGCGATGTATGAGATGCGGCTCCTGTTCCAGAAA
GCATTCCCGGAGACGACACGTCGGGGCGGCGCCAATTTCCTTAACTAA
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