Gchil3270.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3270.t1
Unique Name	Gchil3270.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1280557..1281834 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI227CT
Preferred name	CYCB
PFAMs	Cyclin_C,Cyclin_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21770,ko:K21777
KEGG TC	1.I.1.1.3
KEGG Pathway	ko04068,ko04110,ko04114,ko04115,ko04218,ko04914,ko05166,map04068,map04110,map04114,map04115,map04218,map04914,map05166
Evalue	2.28e-69
EggNOG OGs	COG5024@1\|root,KOG0653@2759\|Eukaryota
Description	cell division
COG category	D
BRITE	ko00000,ko00001,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3270	Gchil3270	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1280557..1281834 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3270.t1.start1	Gchil3270.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1280557..1280559 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3270.t1.CDS1	Gchil3270.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1280557..1281834 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3270.t1.exon1	Gchil3270.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1280557..1281834 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3270.t1.stop1	Gchil3270.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1281832..1281834 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3270.t1	Gchil3270.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1280557..1281834 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1280557..1281834+
coding sequence from alignment at tig00004382_pilon:1280557..1281834+

mRNA sequence

>Gchil3270.t1 ID=Gchil3270.t1|Name=Gchil3270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MSTARFPSRADKRALGDITNHLSHNDHPLPLKPNANVAKPRRTAVTKNVG
AIAARRAAKASAALSCDTTLSPMSTSTTAPRARLSARNARHAGKTAIAVA
RAAAAAAAVSCKLHFPSEISAASARAPLLRSVLTVPPTVVDIDAPHFANH
LYAAEYACDIHANFVAAETKFMPDPAYMTRQADITVRMRAILIDWLVDVH
QKFRLEPETLHLTVNIIDRFLEVTQVVRRKLQLVGVTAMFIASKYEEIYA
PEVGDFVYISDKAYTKDEILCMEAFILNALNFDVTVPSSLTFMQRCLSAA
KAISGTELMAHRHLTHYLIELALQDSAMLEFRPSVRAAAACSLSARLCRV
ALPWDRSMEFHSGGWSEGDIADCEGEMARLLEHERDATGTNKLTAVKRKF
SSDKFSGISANVPSSVDYMMDCSDE*

spliced messenger RNA

>Gchil3270.t1 ID=Gchil3270.t1|Name=Gchil3270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004382_pilon:1280557..1281834+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACAGCACGCTTCCCCTCCCGCGCCGACAAGCGCGCCCTCGGCGA
CATCACTAACCACCTCTCTCACAACGACCACCCCCTCCCCCTCAAGCCCA
ACGCCAACGTCGCAAAGCCCAGACGCACGGCCGTCACCAAGAATGTTGGA
GCCATCGCCGCGCGTCGCGCCGCAAAGGCTTCCGCCGCTCTCTCCTGCGA
CACAACCCTTTCCCCCATGTCCACAAGTACCACCGCCCCACGCGCCCGTC
TTTCCGCCCGCAACGCCCGTCACGCCGGCAAGACCGCTATTGCTGTGGCA
CGAgccgccgccgccgccgccgccgTGTCTTGTAAGCTGCACTTTCCGTC
CGAGATTTCGGCCGCGTCCGCTCGAGCGCCGCTTTTGCGCTCTGTGCTCA
CCGTTCCGCCCACAGTGGTGGATATTGACGCGCCACATTTTGCCAATCAT
CTGTACGCAGCCGAGTATGCGTGTGATATTCACGCCAATTTCGTCGCCGC
CGAAACAAAGTTCATGCCGGACCCGGCGTACATGACGCGTCAGGCCGACA
TCACCGTGCGCATGCGCGCCATTCTCATTGACTGGCTAGTGGACGTGCAT
CAAAAGTTCAGGCTTGAGCCGGAGACGTTGCATCTCACCGTCAACATCAT
CGACCGCTTTCTGGAGGTAACGCAAGTCGTGCGCCGCAAGCTGCAACTCG
TGGGTGTCACAGCCATGTTCATTGCCAGCAAGTACGAGGAAATCTACGCG
CCCGAGGTAGGCGATTTTGTGTACATTTCGGATAAAGCGTACACCAAGGA
CGAGATTTTGTGTATGGAAGCGTTCATCCTCAACGCATTGAACTTTGACG
TCACTGTGCCGTCTTCGCTCACGTTCATGCAGCGCTGTCTCAGCGCGGCC
AAGGCCATCTCAGGCACGGAACTGATGGCGCACCGCCACCTTACACACTA
CCTCATCGAGCTGGCGCTGCAGGACAGCGCTATGCTGGAATTTCGTCCCA
GTGTGCGCGCAGCTGCGGCGTGCAGTCTATCGGCACGCTTGTGTCGCGTC
GCTCTGCCGTGGGATCGCTCTATGGAGTTTCACAGTGGCGGGTGGAGTGA
AGGTGACATTGCAGACTGTGAAGGCGAGATGGCTCGGCTTCTGGAACATG
AGCGTGATGCCACTGGCACTAACAAACTCACGGCGGTGAAGCGCAAGTTT
TCTTCGGACAAGTTCTCGGGTATTTCGGCTAATGTGCCAAGCTCGGTTGA
CTACATGATGGATTGCTCAGATGAATGA

protein sequence of Gchil3270.t1

>Gchil3270.t1 ID=Gchil3270.t1|Name=Gchil3270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MSTARFPSRADKRALGDITNHLSHNDHPLPLKPNANVAKPRRTAVTKNVG
AIAARRAAKASAALSCDTTLSPMSTSTTAPRARLSARNARHAGKTAIAVA
RAAAAAAAVSCKLHFPSEISAASARAPLLRSVLTVPPTVVDIDAPHFANH
LYAAEYACDIHANFVAAETKFMPDPAYMTRQADITVRMRAILIDWLVDVH
QKFRLEPETLHLTVNIIDRFLEVTQVVRRKLQLVGVTAMFIASKYEEIYA
PEVGDFVYISDKAYTKDEILCMEAFILNALNFDVTVPSSLTFMQRCLSAA
KAISGTELMAHRHLTHYLIELALQDSAMLEFRPSVRAAAACSLSARLCRV
ALPWDRSMEFHSGGWSEGDIADCEGEMARLLEHERDATGTNKLTAVKRKF
SSDKFSGISANVPSSVDYMMDCSDE*

mRNA from alignment at tig00004382_pilon:1280557..1281834+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3270.t1 ID=Gchil3270.t1|Name=Gchil3270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004382_pilon:1280557..1281834+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTACAGCACGCTTCCCCTCCCGCGCCGACAAGCGCGCCCTCGGCGA
CATCACTAACCACCTCTCTCACAACGACCACCCCCTCCCCCTCAAGCCCA
ACGCCAACGTCGCAAAGCCCAGACGCACGGCCGTCACCAAGAATGTTGGA
GCCATCGCCGCGCGTCGCGCCGCAAAGGCTTCCGCCGCTCTCTCCTGCGA
CACAACCCTTTCCCCCATGTCCACAAGTACCACCGCCCCACGCGCCCGTC
TTTCCGCCCGCAACGCCCGTCACGCCGGCAAGACCGCTATTGCTGTGGCA
CGAgccgccgccgccgccgccgccgTGTCTTGTAAGCTGCACTTTCCGTC
CGAGATTTCGGCCGCGTCCGCTCGAGCGCCGCTTTTGCGCTCTGTGCTCA
CCGTTCCGCCCACAGTGGTGGATATTGACGCGCCACATTTTGCCAATCAT
CTGTACGCAGCCGAGTATGCGTGTGATATTCACGCCAATTTCGTCGCCGC
CGAAACAAAGTTCATGCCGGACCCGGCGTACATGACGCGTCAGGCCGACA
TCACCGTGCGCATGCGCGCCATTCTCATTGACTGGCTAGTGGACGTGCAT
CAAAAGTTCAGGCTTGAGCCGGAGACGTTGCATCTCACCGTCAACATCAT
CGACCGCTTTCTGGAGGTAACGCAAGTCGTGCGCCGCAAGCTGCAACTCG
TGGGTGTCACAGCCATGTTCATTGCCAGCAAGTACGAGGAAATCTACGCG
CCCGAGGTAGGCGATTTTGTGTACATTTCGGATAAAGCGTACACCAAGGA
CGAGATTTTGTGTATGGAAGCGTTCATCCTCAACGCATTGAACTTTGACG
TCACTGTGCCGTCTTCGCTCACGTTCATGCAGCGCTGTCTCAGCGCGGCC
AAGGCCATCTCAGGCACGGAACTGATGGCGCACCGCCACCTTACACACTA
CCTCATCGAGCTGGCGCTGCAGGACAGCGCTATGCTGGAATTTCGTCCCA
GTGTGCGCGCAGCTGCGGCGTGCAGTCTATCGGCACGCTTGTGTCGCGTC
GCTCTGCCGTGGGATCGCTCTATGGAGTTTCACAGTGGCGGGTGGAGTGA
AGGTGACATTGCAGACTGTGAAGGCGAGATGGCTCGGCTTCTGGAACATG
AGCGTGATGCCACTGGCACTAACAAACTCACGGCGGTGAAGCGCAAGTTT
TCTTCGGACAAGTTCTCGGGTATTTCGGCTAATGTGCCAAGCTCGGTTGA
CTACATGATGGATTGCTCAGATGAATGA

Coding sequence (CDS) from alignment at tig00004382_pilon:1280557..1281834+

>Gchil3270.t1 ID=Gchil3270.t1|Name=Gchil3270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004382_pilon:1280557..1281834+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTACAGCACGCTTCCCCTCCCGCGCCGACAAGCGCGCCCTCGGCGA
CATCACTAACCACCTCTCTCACAACGACCACCCCCTCCCCCTCAAGCCCA
ACGCCAACGTCGCAAAGCCCAGACGCACGGCCGTCACCAAGAATGTTGGA
GCCATCGCCGCGCGTCGCGCCGCAAAGGCTTCCGCCGCTCTCTCCTGCGA
CACAACCCTTTCCCCCATGTCCACAAGTACCACCGCCCCACGCGCCCGTC
TTTCCGCCCGCAACGCCCGTCACGCCGGCAAGACCGCTATTGCTGTGGCA
CGAgccgccgccgccgccgccgccgTGTCTTGTAAGCTGCACTTTCCGTC
CGAGATTTCGGCCGCGTCCGCTCGAGCGCCGCTTTTGCGCTCTGTGCTCA
CCGTTCCGCCCACAGTGGTGGATATTGACGCGCCACATTTTGCCAATCAT
CTGTACGCAGCCGAGTATGCGTGTGATATTCACGCCAATTTCGTCGCCGC
CGAAACAAAGTTCATGCCGGACCCGGCGTACATGACGCGTCAGGCCGACA
TCACCGTGCGCATGCGCGCCATTCTCATTGACTGGCTAGTGGACGTGCAT
CAAAAGTTCAGGCTTGAGCCGGAGACGTTGCATCTCACCGTCAACATCAT
CGACCGCTTTCTGGAGGTAACGCAAGTCGTGCGCCGCAAGCTGCAACTCG
TGGGTGTCACAGCCATGTTCATTGCCAGCAAGTACGAGGAAATCTACGCG
CCCGAGGTAGGCGATTTTGTGTACATTTCGGATAAAGCGTACACCAAGGA
CGAGATTTTGTGTATGGAAGCGTTCATCCTCAACGCATTGAACTTTGACG
TCACTGTGCCGTCTTCGCTCACGTTCATGCAGCGCTGTCTCAGCGCGGCC
AAGGCCATCTCAGGCACGGAACTGATGGCGCACCGCCACCTTACACACTA
CCTCATCGAGCTGGCGCTGCAGGACAGCGCTATGCTGGAATTTCGTCCCA
GTGTGCGCGCAGCTGCGGCGTGCAGTCTATCGGCACGCTTGTGTCGCGTC
GCTCTGCCGTGGGATCGCTCTATGGAGTTTCACAGTGGCGGGTGGAGTGA
AGGTGACATTGCAGACTGTGAAGGCGAGATGGCTCGGCTTCTGGAACATG
AGCGTGATGCCACTGGCACTAACAAACTCACGGCGGTGAAGCGCAAGTTT
TCTTCGGACAAGTTCTCGGGTATTTCGGCTAATGTGCCAAGCTCGGTTGA
CTACATGATGGATTGCTCAGATGAATGA