Gchil3268.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3268.t1
Unique NameGchil3268.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1274982..1276544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3268Gchil3268Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1274982..1276544 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3268.t1.start1Gchil3268.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1274982..1274984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3268.t1.CDS1Gchil3268.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1274982..1276544 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3268.t1.exon1Gchil3268.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1274982..1276544 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3268.t1.stop1Gchil3268.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1276542..1276544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3268.t1Gchil3268.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1274982..1276544 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3268.t1 ID=Gchil3268.t1|Name=Gchil3268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=521bp
MHTTSDPSTWNIIIPSASEHASSSSQRFTSQSVAAQLGQIQTSRQNVQPQ
SDVLPSQQVLPEPSPPLSQTSSHSNNLAFEKKPQTTSPPTETQQPVQQVE
VLSDAQQSTLNNSETHDSQSPSSQDNGQNAERDNSPQSYQSLPSESSSES
DGNSTEPNRTEDEKNEKQKKQEQEKKQQTSPITVQNAAREARLESENSRN
PADFSTFDSTTALNYFHLHKTGGVSFKERLFDFFSLEDKTDSEGEGVNIM
DTCHNSGPAHPDLGTEAEWSCDWATMEQLSESERNKIDLILGHQYWEKGA
QYWVPKRDLRYFTVMRHPLHRKISFFYHFFVRNVGKKEESIELDELILFL
LGKKMPVSPLIRDAGPNYYASRLCSDGYSGYKRHTFVVPEDSAGEMVFKS
IQRLRQNFVFIGLQAQEKASLCMLKKSVAAFSKAQGVQNLNGLDIIDKPR
ERMNTGSYPLSAKIVWEKMSEQQQNEFREVEKVDLAIYKESVKMFHEMVK
KFECGHLVVDDDGDSIAMKK*
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spliced messenger RNA

>Gchil3268.t1 ID=Gchil3268.t1|Name=Gchil3268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004382_pilon:1274982..1276544+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACCACCTCGGATCCGTCCACATGGAACATAATCATTCCTTCAGC
CTCCGAACACGCTTCAAGCTCTTCTCAACGATTCACGTCACAATCCGTCG
CCGCACAACTTGGACAAATCCAAACGTCTCGCCAAAACGTCCAGCCGCAG
TCTGATGTGCTCCCCTCTCAACAAGTGCTCCCGGAGCCTTCTCCACCACT
TTCTCAAACCAGTTCGCATTCCAACAACTTGGCCTTTGAGAAAAAACCGC
AAACCACCTCCCCGCCTACCGAAACTCAACAGCCCGTGCAACAGGTTGAG
GTCCTTTCCGATGCTCAACAGTCTACTTTAAATAACTCTGAAACGCACGA
TTCTCAATCCCCTTCATCTCAGGACAATGGCCAAAACGCGGAGCGAGACA
ACTCTCCCCAGTCGTATCAATCACTACCTTCTGAATCCAGTTCTGAATCA
GATGGCAATTCTACAGAACCGAATCGCACTGAAGACGAGaaaaatgaaaa
acaaaaaaaacaagaacaagaaaagaaacaGCAGACATCTCCAATCACCG
TTCAGAACGCCGCTCGCGAGGCACGTCTGGAGAGCGAAAACTCTCGAAAT
CCGGCCGACTTTTCCACCTTTGACTCTACTACAGCTCTCAACTACTTTCA
TCTGCACAAGACCGGAGGGGTCTCATTCAAGGAACGTTTATTCGACTTTT
TCAGTCTGGAAGACAAGACAGATTCGGAGGGAGAAGGCGTGAATATAATG
GATACGTGCCACAACTCCGGTCCGGCTCACCCGGATTTGGGAACCGAGGC
CGAATGGTCTTGTGATTGGGCTACAATGGAACAGCTCTCCGAATCAGAGC
GAAACAAGATAGACCTCATTCTTGGTCATCAGTACTGGGAAAAGGGCGCA
CAGTACTGGGTTCCCAAACGGGATTTGCGCTACTTCACCGTTATGAGACA
TCCATTGCATAGAAAGATTTCATTCTTTTATCACTTTTTTGTGCGAAATG
TCGGCAAAAAAGAAGAGTCCATCGAGTTGGACGAGCTTATTCTGTTTCTT
TTGGGAAAGAAAATGCCTGTCTCACCTCTGATTCGCGACGCGGGCCCGAA
TTATTACGCTAGTCGCCTATGTTCCGACGGATATAGCGGTTATAAGAGGC
ATACATTCGTTGTACCTGAAGATAGTGCCGGCGAGATGGTATTCAAGTCA
ATCCAACGACTTCGGCAAAACTTTGTTTTCATCGGGTTACAAGCTCAAGA
AAAAGCGTCCCTCTGCATGTTGAAAAAGTCAGTTGCTGCTTTCAGCAAAG
CACAAGGGGTCCAAAACTTGAACGGCCTTGATATAATCGACAAGCCACGA
GAACGTATGAACACTGGTTCTTACCCCCTGTCTGCGAAGATTGTGTGGGA
AAAGATGTCAGAGCAGCAACAAAACGAATTTCGGGAAGTGGAAAAGGTGG
ACCTGGCCATCTACAAGGAGAGCGTGAAAATGTTTCACGAGATGGTCAAA
AAGTTTGAGTGCGGGCATTTAGTAGTAGATGACGATGGAGATAGCATTGC
CATGAAGAAATAA
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protein sequence of Gchil3268.t1

>Gchil3268.t1 ID=Gchil3268.t1|Name=Gchil3268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=521bp
MHTTSDPSTWNIIIPSASEHASSSSQRFTSQSVAAQLGQIQTSRQNVQPQ
SDVLPSQQVLPEPSPPLSQTSSHSNNLAFEKKPQTTSPPTETQQPVQQVE
VLSDAQQSTLNNSETHDSQSPSSQDNGQNAERDNSPQSYQSLPSESSSES
DGNSTEPNRTEDEKNEKQKKQEQEKKQQTSPITVQNAAREARLESENSRN
PADFSTFDSTTALNYFHLHKTGGVSFKERLFDFFSLEDKTDSEGEGVNIM
DTCHNSGPAHPDLGTEAEWSCDWATMEQLSESERNKIDLILGHQYWEKGA
QYWVPKRDLRYFTVMRHPLHRKISFFYHFFVRNVGKKEESIELDELILFL
LGKKMPVSPLIRDAGPNYYASRLCSDGYSGYKRHTFVVPEDSAGEMVFKS
IQRLRQNFVFIGLQAQEKASLCMLKKSVAAFSKAQGVQNLNGLDIIDKPR
ERMNTGSYPLSAKIVWEKMSEQQQNEFREVEKVDLAIYKESVKMFHEMVK
KFECGHLVVDDDGDSIAMKK*
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mRNA from alignment at tig00004382_pilon:1274982..1276544+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3268.t1 ID=Gchil3268.t1|Name=Gchil3268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004382_pilon:1274982..1276544+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACACCACCTCGGATCCGTCCACATGGAACATAATCATTCCTTCAGC
CTCCGAACACGCTTCAAGCTCTTCTCAACGATTCACGTCACAATCCGTCG
CCGCACAACTTGGACAAATCCAAACGTCTCGCCAAAACGTCCAGCCGCAG
TCTGATGTGCTCCCCTCTCAACAAGTGCTCCCGGAGCCTTCTCCACCACT
TTCTCAAACCAGTTCGCATTCCAACAACTTGGCCTTTGAGAAAAAACCGC
AAACCACCTCCCCGCCTACCGAAACTCAACAGCCCGTGCAACAGGTTGAG
GTCCTTTCCGATGCTCAACAGTCTACTTTAAATAACTCTGAAACGCACGA
TTCTCAATCCCCTTCATCTCAGGACAATGGCCAAAACGCGGAGCGAGACA
ACTCTCCCCAGTCGTATCAATCACTACCTTCTGAATCCAGTTCTGAATCA
GATGGCAATTCTACAGAACCGAATCGCACTGAAGACGAGaaaaatgaaaa
acaaaaaaaacaagaacaagaaaagaaacaGCAGACATCTCCAATCACCG
TTCAGAACGCCGCTCGCGAGGCACGTCTGGAGAGCGAAAACTCTCGAAAT
CCGGCCGACTTTTCCACCTTTGACTCTACTACAGCTCTCAACTACTTTCA
TCTGCACAAGACCGGAGGGGTCTCATTCAAGGAACGTTTATTCGACTTTT
TCAGTCTGGAAGACAAGACAGATTCGGAGGGAGAAGGCGTGAATATAATG
GATACGTGCCACAACTCCGGTCCGGCTCACCCGGATTTGGGAACCGAGGC
CGAATGGTCTTGTGATTGGGCTACAATGGAACAGCTCTCCGAATCAGAGC
GAAACAAGATAGACCTCATTCTTGGTCATCAGTACTGGGAAAAGGGCGCA
CAGTACTGGGTTCCCAAACGGGATTTGCGCTACTTCACCGTTATGAGACA
TCCATTGCATAGAAAGATTTCATTCTTTTATCACTTTTTTGTGCGAAATG
TCGGCAAAAAAGAAGAGTCCATCGAGTTGGACGAGCTTATTCTGTTTCTT
TTGGGAAAGAAAATGCCTGTCTCACCTCTGATTCGCGACGCGGGCCCGAA
TTATTACGCTAGTCGCCTATGTTCCGACGGATATAGCGGTTATAAGAGGC
ATACATTCGTTGTACCTGAAGATAGTGCCGGCGAGATGGTATTCAAGTCA
ATCCAACGACTTCGGCAAAACTTTGTTTTCATCGGGTTACAAGCTCAAGA
AAAAGCGTCCCTCTGCATGTTGAAAAAGTCAGTTGCTGCTTTCAGCAAAG
CACAAGGGGTCCAAAACTTGAACGGCCTTGATATAATCGACAAGCCACGA
GAACGTATGAACACTGGTTCTTACCCCCTGTCTGCGAAGATTGTGTGGGA
AAAGATGTCAGAGCAGCAACAAAACGAATTTCGGGAAGTGGAAAAGGTGG
ACCTGGCCATCTACAAGGAGAGCGTGAAAATGTTTCACGAGATGGTCAAA
AAGTTTGAGTGCGGGCATTTAGTAGTAGATGACGATGGAGATAGCATTGC
CATGAAGAAATAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1274982..1276544+

>Gchil3268.t1 ID=Gchil3268.t1|Name=Gchil3268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00004382_pilon:1274982..1276544+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACACCACCTCGGATCCGTCCACATGGAACATAATCATTCCTTCAGC
CTCCGAACACGCTTCAAGCTCTTCTCAACGATTCACGTCACAATCCGTCG
CCGCACAACTTGGACAAATCCAAACGTCTCGCCAAAACGTCCAGCCGCAG
TCTGATGTGCTCCCCTCTCAACAAGTGCTCCCGGAGCCTTCTCCACCACT
TTCTCAAACCAGTTCGCATTCCAACAACTTGGCCTTTGAGAAAAAACCGC
AAACCACCTCCCCGCCTACCGAAACTCAACAGCCCGTGCAACAGGTTGAG
GTCCTTTCCGATGCTCAACAGTCTACTTTAAATAACTCTGAAACGCACGA
TTCTCAATCCCCTTCATCTCAGGACAATGGCCAAAACGCGGAGCGAGACA
ACTCTCCCCAGTCGTATCAATCACTACCTTCTGAATCCAGTTCTGAATCA
GATGGCAATTCTACAGAACCGAATCGCACTGAAGACGAGaaaaatgaaaa
acaaaaaaaacaagaacaagaaaagaaacaGCAGACATCTCCAATCACCG
TTCAGAACGCCGCTCGCGAGGCACGTCTGGAGAGCGAAAACTCTCGAAAT
CCGGCCGACTTTTCCACCTTTGACTCTACTACAGCTCTCAACTACTTTCA
TCTGCACAAGACCGGAGGGGTCTCATTCAAGGAACGTTTATTCGACTTTT
TCAGTCTGGAAGACAAGACAGATTCGGAGGGAGAAGGCGTGAATATAATG
GATACGTGCCACAACTCCGGTCCGGCTCACCCGGATTTGGGAACCGAGGC
CGAATGGTCTTGTGATTGGGCTACAATGGAACAGCTCTCCGAATCAGAGC
GAAACAAGATAGACCTCATTCTTGGTCATCAGTACTGGGAAAAGGGCGCA
CAGTACTGGGTTCCCAAACGGGATTTGCGCTACTTCACCGTTATGAGACA
TCCATTGCATAGAAAGATTTCATTCTTTTATCACTTTTTTGTGCGAAATG
TCGGCAAAAAAGAAGAGTCCATCGAGTTGGACGAGCTTATTCTGTTTCTT
TTGGGAAAGAAAATGCCTGTCTCACCTCTGATTCGCGACGCGGGCCCGAA
TTATTACGCTAGTCGCCTATGTTCCGACGGATATAGCGGTTATAAGAGGC
ATACATTCGTTGTACCTGAAGATAGTGCCGGCGAGATGGTATTCAAGTCA
ATCCAACGACTTCGGCAAAACTTTGTTTTCATCGGGTTACAAGCTCAAGA
AAAAGCGTCCCTCTGCATGTTGAAAAAGTCAGTTGCTGCTTTCAGCAAAG
CACAAGGGGTCCAAAACTTGAACGGCCTTGATATAATCGACAAGCCACGA
GAACGTATGAACACTGGTTCTTACCCCCTGTCTGCGAAGATTGTGTGGGA
AAAGATGTCAGAGCAGCAACAAAACGAATTTCGGGAAGTGGAAAAGGTGG
ACCTGGCCATCTACAAGGAGAGCGTGAAAATGTTTCACGAGATGGTCAAA
AAGTTTGAGTGCGGGCATTTAGTAGTAGATGACGATGGAGATAGCATTGC
CATGAAGAAATAA
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