Gchil3265.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3265.t1
Unique Name	Gchil3265.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1268405..1269202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81824.XP_001747622.1
PFAMs	Myb_DNA-binding
Max annot lvl	33154\|Opisthokonta
Evalue	7.5e-27
EggNOG OGs	COG5147@1\|root,KOG0048@2759\|Eukaryota,38EUR@33154\|Opisthokonta
Description	V-myb avian myeloblastosis viral oncogene
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3265	Gchil3265	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1268405..1269202 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3265.t1.start1	Gchil3265.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1268405..1268407 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3265.t1.CDS1	Gchil3265.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1268405..1269202 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3265.t1.exon1	Gchil3265.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1268405..1269202 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3265.t1.stop1	Gchil3265.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1269200..1269202 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3265.t1	Gchil3265.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1268405..1269202 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1268405..1269202+
coding sequence from alignment at tig00004382_pilon:1268405..1269202+

mRNA sequence

>Gchil3265.t1 ID=Gchil3265.t1|Name=Gchil3265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MSVSMLLNAANAVTAAERCRAIDPRSGRIPITFLLARCDDLDDHTRRELS
HLASHSPSLSLERRSCDAHPSIPEPPLPSPSHLTEQQALDDIERTANANA
KRTNSGSSGSSGSGSTSTTLTNSAIRKATGSAPGSSSQSTSTSTGSGAPR
RRRRWKQWEDELLQRVVAEHGATKWNNVARHFPGRNGRQVRLRWMNHLQP
SLEKRAWTVQEDTVLMDAHRQLGNKWALIAMRLCGRTDNSVKNRYKSIVR
RAVRDANARDANARK*

spliced messenger RNA

>Gchil3265.t1 ID=Gchil3265.t1|Name=Gchil3265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004382_pilon:1268405..1269202+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTGTCCATGCTGCTCAATGCTGCCAACGCGGTCACGGCTGCCGA
GCGCTGTCGCGCCATTGATCCACGTAGTGGACGCATTCCCATTACCTTCT
TGTTGGCGCGCTGCGATGATTTGGATGACCACACTCGTCGCGAGCTGAGC
CACCTCGCCTCCCACTCCCCGTCGCTCAGTCTTGAGCGCCGCTCCTGTGA
TGCGCACCCTTCTATCCCCGAGCCGCCATTGCCGTCACCGTCGCATCTCA
CCGAGCAACAGGCACTGGACGACATTGAGCGCACCGCAAACGCAAACGCA
AAGCGCACCAACAGCGGCAGCAGCGGCAGCAGCGGCAGCGGCAGCACCAG
CACAACGCTCACCAATAGCGCCATCCGCAAGGCCACGGGCTCAGCACCCG
GCAGCAGCAGCCAGTCCACGTCCACGTCGACGGGCAGCGGCGCGCCGCGA
CGGCGGCGGCGCTGGAAGCAGTGGGAGGACGAGTTGCTTCAACGCGTGGT
GGCCGAACACGGTGCCACCAAGTGGAACAACGTGGCGCGTCACTTTCCAG
GTCGTAATGGACGACAGGTGCGTCTTCGCTGGATGAATCATCTGCAACCT
TCGCTTGAAAAGCGCGCGTGGACGGTGCAGGAGGACACGGTGCTCATGGA
TGCACACCGTCAACTGGGAAACAAGTGGGCGCTCATCGCTATGCGGCTGT
GCGGTCGCACCGACAACAGCGTCAAGAATCGCTACAAGAGCATTGTTCGG
CGTGCGGTGCGAGACGCCAACGCGCGAGACGCCAACGCGCGCAAGTAG

protein sequence of Gchil3265.t1

>Gchil3265.t1 ID=Gchil3265.t1|Name=Gchil3265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MSVSMLLNAANAVTAAERCRAIDPRSGRIPITFLLARCDDLDDHTRRELS
HLASHSPSLSLERRSCDAHPSIPEPPLPSPSHLTEQQALDDIERTANANA
KRTNSGSSGSSGSGSTSTTLTNSAIRKATGSAPGSSSQSTSTSTGSGAPR
RRRRWKQWEDELLQRVVAEHGATKWNNVARHFPGRNGRQVRLRWMNHLQP
SLEKRAWTVQEDTVLMDAHRQLGNKWALIAMRLCGRTDNSVKNRYKSIVR
RAVRDANARDANARK*

mRNA from alignment at tig00004382_pilon:1268405..1269202+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3265.t1 ID=Gchil3265.t1|Name=Gchil3265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004382_pilon:1268405..1269202+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGTGTCCATGCTGCTCAATGCTGCCAACGCGGTCACGGCTGCCGA
GCGCTGTCGCGCCATTGATCCACGTAGTGGACGCATTCCCATTACCTTCT
TGTTGGCGCGCTGCGATGATTTGGATGACCACACTCGTCGCGAGCTGAGC
CACCTCGCCTCCCACTCCCCGTCGCTCAGTCTTGAGCGCCGCTCCTGTGA
TGCGCACCCTTCTATCCCCGAGCCGCCATTGCCGTCACCGTCGCATCTCA
CCGAGCAACAGGCACTGGACGACATTGAGCGCACCGCAAACGCAAACGCA
AAGCGCACCAACAGCGGCAGCAGCGGCAGCAGCGGCAGCGGCAGCACCAG
CACAACGCTCACCAATAGCGCCATCCGCAAGGCCACGGGCTCAGCACCCG
GCAGCAGCAGCCAGTCCACGTCCACGTCGACGGGCAGCGGCGCGCCGCGA
CGGCGGCGGCGCTGGAAGCAGTGGGAGGACGAGTTGCTTCAACGCGTGGT
GGCCGAACACGGTGCCACCAAGTGGAACAACGTGGCGCGTCACTTTCCAG
GTCGTAATGGACGACAGGTGCGTCTTCGCTGGATGAATCATCTGCAACCT
TCGCTTGAAAAGCGCGCGTGGACGGTGCAGGAGGACACGGTGCTCATGGA
TGCACACCGTCAACTGGGAAACAAGTGGGCGCTCATCGCTATGCGGCTGT
GCGGTCGCACCGACAACAGCGTCAAGAATCGCTACAAGAGCATTGTTCGG
CGTGCGGTGCGAGACGCCAACGCGCGAGACGCCAACGCGCGCAAGTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:1268405..1269202+

>Gchil3265.t1 ID=Gchil3265.t1|Name=Gchil3265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00004382_pilon:1268405..1269202+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGTGTCCATGCTGCTCAATGCTGCCAACGCGGTCACGGCTGCCGA
GCGCTGTCGCGCCATTGATCCACGTAGTGGACGCATTCCCATTACCTTCT
TGTTGGCGCGCTGCGATGATTTGGATGACCACACTCGTCGCGAGCTGAGC
CACCTCGCCTCCCACTCCCCGTCGCTCAGTCTTGAGCGCCGCTCCTGTGA
TGCGCACCCTTCTATCCCCGAGCCGCCATTGCCGTCACCGTCGCATCTCA
CCGAGCAACAGGCACTGGACGACATTGAGCGCACCGCAAACGCAAACGCA
AAGCGCACCAACAGCGGCAGCAGCGGCAGCAGCGGCAGCGGCAGCACCAG
CACAACGCTCACCAATAGCGCCATCCGCAAGGCCACGGGCTCAGCACCCG
GCAGCAGCAGCCAGTCCACGTCCACGTCGACGGGCAGCGGCGCGCCGCGA
CGGCGGCGGCGCTGGAAGCAGTGGGAGGACGAGTTGCTTCAACGCGTGGT
GGCCGAACACGGTGCCACCAAGTGGAACAACGTGGCGCGTCACTTTCCAG
GTCGTAATGGACGACAGGTGCGTCTTCGCTGGATGAATCATCTGCAACCT
TCGCTTGAAAAGCGCGCGTGGACGGTGCAGGAGGACACGGTGCTCATGGA
TGCACACCGTCAACTGGGAAACAAGTGGGCGCTCATCGCTATGCGGCTGT
GCGGTCGCACCGACAACAGCGTCAAGAATCGCTACAAGAGCATTGTTCGG
CGTGCGGTGCGAGACGCCAACGCGCGAGACGCCAACGCGCGCAAGTAG