Gchil3261.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3261.t1
Unique NameGchil3261.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1260533..1261222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_02796T0
PFAMsUPF0054
Max annot lvl4751|Fungi
Evalue3.48e-13
EggNOG OGs2CWTW@1|root,2RV8B@2759|Eukaryota,394P0@33154|Opisthokonta,3PI8N@4751|Fungi
DescriptionUncharacterized protein family UPF0054
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3261Gchil3261Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1260533..1261222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3261.t1Gchil3261.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1260533..1261222 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3261.t1.stop1Gchil3261.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1260533..1260535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3261.t1.CDS1Gchil3261.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1260533..1261072 -
Gchil3261.t1.CDS2Gchil3261.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1261178..1261222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3261.t1.exon1Gchil3261.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1260533..1261072 -
Gchil3261.t1.exon2Gchil3261.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1261178..1261222 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3261.t1.intron1Gchil3261.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1261073..1261177 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3261.t1.start1Gchil3261.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1261220..1261222 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3261.t1 ID=Gchil3261.t1|Name=Gchil3261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=195bp
MRGIPFIDRARLRKQVEVVRNTYLHGEFKKHDATIVLATDAKVRRLNWWY
GTARETTDVLSFPLRDEPRRKPQVPSPFDEDISTLLQNVPFLDPDTGRLM
DRFDGALPTITEDLGQIFVAMTYCETIAKEREMNPADYIALACVHGMGHL
VGFDHLTDDDYKAMKSAEETVVRAMVSEVGILGAEETFPQSYLS*
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spliced messenger RNA

>Gchil3261.t1 ID=Gchil3261.t1|Name=Gchil3261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00004382_pilon:1260533..1261222- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGCATCCCCTTTATTGACCGCGCTCGGCTCAGAAAACAGGTTGA
AGTAGTCCGTAACACTTATCTTCACGGCGAGTTCAAAAAGCATGATGCAA
CGATTGTGCTCGCTACAGACGCCAAAGTGCGGCGCTTAAACTGGTGGTAC
GGGACGGCCCGAGAAACAACAGACGTCCTGTCGTTTCCTTTGCGCGACGA
GCCCCGACGTAAACCACAAGTTCCGTCACCGTTCGATGAAGATATTTCAA
CACTTCTACAAAACGTGCCTTTTCTCGATCCCGATACCGGGCGATTAATG
GACCGTTTTGACGGCGCTCTTCCAACCATTACAGAAGATCTAGGACAAAT
CTTCGTCGCGATGACGTACTGCGAAACTATAGCGAAAGAACGCGAAATGA
ACCCCGCCGATTACATTGCACTTGCCTGTGTTCATGGAATGGGGCATTTA
GTAGGGTTTGATCATCTGACAGACGATGACTACAAAGCGATGAAAAGCGC
CGAAGAAACTGTTGTGCGGGCTATGGTATCGGAAGTTGGAATTCTTGGGG
CCGAAGAAACCTTCCCACAGTCATACCTTTCATAA
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protein sequence of Gchil3261.t1

>Gchil3261.t1 ID=Gchil3261.t1|Name=Gchil3261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=195bp
MRGIPFIDRARLRKQVEVVRNTYLHGEFKKHDATIVLATDAKVRRLNWWY
GTARETTDVLSFPLRDEPRRKPQVPSPFDEDISTLLQNVPFLDPDTGRLM
DRFDGALPTITEDLGQIFVAMTYCETIAKEREMNPADYIALACVHGMGHL
VGFDHLTDDDYKAMKSAEETVVRAMVSEVGILGAEETFPQSYLS*
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mRNA from alignment at tig00004382_pilon:1260533..1261222-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3261.t1 ID=Gchil3261.t1|Name=Gchil3261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004382_pilon:1260533..1261222- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGGCATCCCCTTTATTGACCGCGCTCGGCTCAGAAAACAGGTGAG
TCAATCGTAAATCACTGAGGAGCTTCCTCGTAAAGTTCCTGATAGTTTCT
AACGTCTATATTACTCTGTTGTTGTCATACCGAACCCTTTTACTTCCAAG
GTTGAAGTAGTCCGTAACACTTATCTTCACGGCGAGTTCAAAAAGCATGA
TGCAACGATTGTGCTCGCTACAGACGCCAAAGTGCGGCGCTTAAACTGGT
GGTACGGGACGGCCCGAGAAACAACAGACGTCCTGTCGTTTCCTTTGCGC
GACGAGCCCCGACGTAAACCACAAGTTCCGTCACCGTTCGATGAAGATAT
TTCAACACTTCTACAAAACGTGCCTTTTCTCGATCCCGATACCGGGCGAT
TAATGGACCGTTTTGACGGCGCTCTTCCAACCATTACAGAAGATCTAGGA
CAAATCTTCGTCGCGATGACGTACTGCGAAACTATAGCGAAAGAACGCGA
AATGAACCCCGCCGATTACATTGCACTTGCCTGTGTTCATGGAATGGGGC
ATTTAGTAGGGTTTGATCATCTGACAGACGATGACTACAAAGCGATGAAA
AGCGCCGAAGAAACTGTTGTGCGGGCTATGGTATCGGAAGTTGGAATTCT
TGGGGCCGAAGAAACCTTCCCACAGTCATACCTTTCATAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1260533..1261222-

>Gchil3261.t1 ID=Gchil3261.t1|Name=Gchil3261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00004382_pilon:1260533..1261222- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGGCATCCCCTTTATTGACCGCGCTCGGCTCAGAAAACAGGTTGA
AGTAGTCCGTAACACTTATCTTCACGGCGAGTTCAAAAAGCATGATGCAA
CGATTGTGCTCGCTACAGACGCCAAAGTGCGGCGCTTAAACTGGTGGTAC
GGGACGGCCCGAGAAACAACAGACGTCCTGTCGTTTCCTTTGCGCGACGA
GCCCCGACGTAAACCACAAGTTCCGTCACCGTTCGATGAAGATATTTCAA
CACTTCTACAAAACGTGCCTTTTCTCGATCCCGATACCGGGCGATTAATG
GACCGTTTTGACGGCGCTCTTCCAACCATTACAGAAGATCTAGGACAAAT
CTTCGTCGCGATGACGTACTGCGAAACTATAGCGAAAGAACGCGAAATGA
ACCCCGCCGATTACATTGCACTTGCCTGTGTTCATGGAATGGGGCATTTA
GTAGGGTTTGATCATCTGACAGACGATGACTACAAAGCGATGAAAAGCGC
CGAAGAAACTGTTGTGCGGGCTATGGTATCGGAAGTTGGAATTCTTGGGG
CCGAAGAAACCTTCCCACAGTCATACCTTTCATAA
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