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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704114.1 |
| PFAMs | Suf,TPR_14 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K14408 |
| KEGG Pathway | ko03015,map03015 |
| GOs | GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016458,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031047,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042868,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060968,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 |
| Evalue | 1.6e-63 |
| EggNOG OGs | COG0696@1|root,KOG1914@2759|Eukaryota |
| Description | mRNA processing |
| COG category | G |
| BRITE | ko00000,ko00001,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil3256.t1 ID=Gchil3256.t1|Name=Gchil3256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=704bp MDSARAADGERRVATDHWDIDGWHILASEADKVSFDAAKPVYDRLVQQFP PIGKFWRSYAEHLAREQPENHDAITAIYDRAVKSAPTSIDLWRSYLAYVS ARAAEIPGSKLESDAIAVHERAVKCAGLDLNAHPLWTHYIEFVKKQTMLS DSQRRDALRRVYQRAVRTPMHNLDAFWRDYTTFEQTSNTNKEIGRTHLAE NQPKNIDARAEFRARKTRREGLTLSTLPVPPRGRAKESSQAQQWRRFILH ERSNPSSLADSDLHERVIHAYESALAPMHRYPDFWIEYLSYVHSTFSVEL KQTLGKGHENKDSNSNANSNLAKNMAESLEPILERAIMAVPHSVALHAHT SWLYTRIAEPGKGVAALDALCKSHPSPLTYVHLMRATRKHDGRDAARKVF GRARKDPKGTHPSVYVAAALMEFSTNKDSKVARNVFEFGLKNFAKNAVMT TEYVNWLWGTGDLEYARVILKKVMPDAKGTPAEVRRLWELWIDLEELIGD VSTVDEVESLWKESGVGRPETVVNEVLRRSRFLGFEGFSENELGAINGNR AGVSAKTTGASSAGGGRRDPRTGRRVGASGASKETMGNGVSPRRSGDEGK GSVLKVAIEMLQRMASALPPVAAPPPNPDVLFRMIETTPDSFLDTPAGRN AGGPRNGKESVGSKKRKVEEATHITTSAAVGMGVMGASDVFRARQAAKQA RTR* back to topspliced messenger RNA >Gchil3256.t1 ID=Gchil3256.t1|Name=Gchil3256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004382_pilon:1245103..1247727- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACTCAGCTCGCGCCGCTGATGGCGAGCGGCGTGTGGCAACCGATCA CTGGGATATTGACGGATGGCACATTCTCGCCTCCGAAGCCGATAAGGTTT CATTTGACGCCGCAAAGCCCGTGTACGACCGTCTTGTCCAGCAATTCCCC CCCATCGGCAAGTTTTGGCGTTCGTACGCAGAACACCTTGCTCGCGAACA ACCCGAAAACCACGATGCCATCACTGCAATCTACGATCGTGCTGTCAAGA GCGCCCCGACTTCAATTGACCTTTGGCGCAGTTATCTTGCCTACGTCAGT GCTAGGGCTGCGGAAATTCCCGGCTCCAAGCTTGAATCTGATGCCATTGC TGTGCATGAAAGAGCCGTAAAGTGTGCCGGCTTGGATCTTAATGCCCATC CGCTTTGGACGCACTACATCGAGTTCGTCAAGAAGCAAACGATGCTGTCG GATAGTCAACGTCGAGACGCATTACGACGTGTTTATCAACGAGCGGTCCG AACGCCTATGCACAATCTAGATGCATTCTGGCGAGACTATACAACTTTTG AACAAACAAGTAATACCAACAAAGAGATCGGTCGAACCCATCTGGCTGAA AACCAACCCAAGAATATCGACGCCCGTGCAGAGTTCCGGGCACGTAAAAC AAGACGCGAAGGCTTAACTCTCTCAACGCTACCAGTTCCCCCACGAGGGC GTGCAAAGGAATCATCACAAGCCCAACAATGGCGCAGATTTATTCTACAT GAGAGATCAAATCCGTCGTCATTGGCAGACAGTGATCTTCATGAGCGTGT GATACATGCCTATGAGAGTGCTCTCGCACCAATGCATCGGTATCCAGACT TCTGGATAGAGTACCTCTCATATGTTCACAGCACATTCAGTGTTGAACTA AAGCAAACGCTTGGGAAAGGTCATGAAAATAAGGACTCAAACTCAAACGC TAACTCAAACCTCGCAAAGAATATGGCAGAATCTTTGGAGCCTATTCTGG AACGAGCAATCATGGCTGTTCCCCATAGCGTTGCCTTGCACGCCCACACC AGTTGGTTGTACACTCGAATTGCAGAACCGGGCAAGGGCGTTGCTGCTCT AGACGCACTGTGCAAGTCACATCCATCTCCTCTCACATATGTTCATTTAA TGAGAGCTACTCGAAAACACGATGGAAGAGATGCAGCCAGAAAAGTCTTC GGACGTGCGAGAAAAGATCCGAAAGGAACCCATCCAAGCGTATATGTCGC AGCTGCATTGATGGAGTTCTCTACTAACAAAGATAGCAAGGTGGCGCGGA ATGTATTTGAGTTCGGGCTAAAGAATTTTGCAAAGAATGCGGTTATGACT ACGGAATACGTCAACTGGTTATGGGGTACAGGTGATCTAGAGTACGCCCG GGTGATTCTCAAGAAAGTAATGCCAGATGCAAAAGGCACACCAGCGGAAG TTCGTCGATTGTGGGAACTGTGGATTGATCTCGAGGAACTGATTGGTGAT GTATCCACCGTAGACGAGGTAGAATCACTGTGGAAAGAAAGCGGAGTCGG GCGCCCCGAAACAGTCGTCAACGAGGTACTGAGAAGATCACGCTTCCTTG GGTTCGAAGGCTTTTCCGAAAACGAATTGGGGGCTATCAATGGGAACCGA GCTGGCGTTTCAGCCAAGACTACGGGTGCTAGCTCTGCAGGTGGGGGTCG TCGGGATCCCAGAACTGGTAGAAGGGTTGGTGCATCAGGTGCAAGCAAGG AAACAATGGGGAACGGAGTATCACCACGGCGAAGCGGTGATGAGGGGAAG GGGTCTGTTCTGAAGGTGGCCATCGAGATGCTACAAAGAATGGCATCCGC GCTGCCACCTGTCGCAGCACCACCTCCAAACCCGGATGTATTGTTTCGTA TGATTGAAACCACCCCCGACTCATTCCTTGACACGCCTGCAGGCAGAAAT GCAGGAGGACCAAGAAATGGAAAGGAAAGTGTTGGCTCGAAAAAGAGGAA AGTTGAAGAAGCGACACACATTACAACCTCAGCAGCCGTTGGTATGGGTG TTATGGGAGCATCTGATGTCTTTCGAGCGCGGCAAGCTGCCAAGCAGGCG AGGACAAGGTAA back to topprotein sequence of Gchil3256.t1 >Gchil3256.t1 ID=Gchil3256.t1|Name=Gchil3256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=704bp
MDSARAADGERRVATDHWDIDGWHILASEADKVSFDAAKPVYDRLVQQFP PIGKFWRSYAEHLAREQPENHDAITAIYDRAVKSAPTSIDLWRSYLAYVS ARAAEIPGSKLESDAIAVHERAVKCAGLDLNAHPLWTHYIEFVKKQTMLS DSQRRDALRRVYQRAVRTPMHNLDAFWRDYTTFEQTSNTNKEIGRTHLAE NQPKNIDARAEFRARKTRREGLTLSTLPVPPRGRAKESSQAQQWRRFILH ERSNPSSLADSDLHERVIHAYESALAPMHRYPDFWIEYLSYVHSTFSVEL KQTLGKGHENKDSNSNANSNLAKNMAESLEPILERAIMAVPHSVALHAHT SWLYTRIAEPGKGVAALDALCKSHPSPLTYVHLMRATRKHDGRDAARKVF GRARKDPKGTHPSVYVAAALMEFSTNKDSKVARNVFEFGLKNFAKNAVMT TEYVNWLWGTGDLEYARVILKKVMPDAKGTPAEVRRLWELWIDLEELIGD VSTVDEVESLWKESGVGRPETVVNEVLRRSRFLGFEGFSENELGAINGNR AGVSAKTTGASSAGGGRRDPRTGRRVGASGASKETMGNGVSPRRSGDEGK GSVLKVAIEMLQRMASALPPVAAPPPNPDVLFRMIETTPDSFLDTPAGRN AGGPRNGKESVGSKKRKVEEATHITTSAAVGMGVMGASDVFRARQAAKQA RTR* back to topmRNA from alignment at tig00004382_pilon:1245103..1247727- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil3256.t1 ID=Gchil3256.t1|Name=Gchil3256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2625bp|location=Sequence derived from alignment at tig00004382_pilon:1245103..1247727- (Gracilaria chilensis NLEC103_M9 male) ATGGACTCAGCTCGCGCCGCTGATGGCGAGCGGCGTGTGGCAACCGATCA
CTGGGATATTGACGGATGGCACATTCTCGCCTCCGAAGCCGATAAGGTTT
CATTTGACGCCGCAAAGCCCGTGTACGACCGTCTTGTCCAGCAATTCCCC
CCCATCGGCAAGTTTTGGCGTTCGTACGCAGAACACCTTGCTCGCGAACA
ACCCGAAAACCACGATGCCATCACTGCAATCTACGATCGTGCTGTCAAGA
GCGCCCCGACTTCAATTGACCTTTGGCGCAGTTATCTTGCCTACGTCAGT
GCTAGGGCTGCGGAAATTCCCGGCTCCAAGCTTGAATCTGATGCCATTGC
TGTGCATGAAAGAGCCGTAAAGTGTGCCGGCTTGGATCTTAATGCCCATC
CGCTTTGGACGCACTACATCGAGTTCGTCAAGAAGCAAACGATGCTGTCG
GATAGTCAACGTCGAGACGCATTACGACGTGTTTATCAACGAGCGGTAAT
GATTTCCATTCTTTTGTCTCAACATCGCCCTTGCCTTTCTCAGCCCCCGT
ACGTTCTGTACTCACCGCATGCCCGCCCCTGTTTTCACCTTCTTCAAAAA
AGAACATTTCGTCTATCTCTTCATGTTGTTCCTTCTGCGTCTTGTGCAAA
GTCTTGTGTCGTCTCATGAATATTGTCTTACATTTTCATAGTAGACATTG
TGAGCACACTAGCCTTCACTGTTCCATCAAAACAAATGTCTCTATGCACC
ACCATTCCAAACGGCTCCTCAAGTAGGCTCTTGTTTGTTCGAGCGTACTA
CGCTTCATCCTTGCGATACTCCACTTCACCTGAATGTTCTTAAATTCCAC
ACGTAGATATACAACGCCTTTTTTTGGCGGGGGCGGGCATGCTGATGCAG
TACATGAAGCACAAACATTGAGAGACTGCAAGAACAAACATTCACTAACC
ACTCGTTTCGTACACTCTCTTTATGTACAATTTTTTTTTGAATCATTGTC
TGCGACAGGTCCGAACGCCTATGCACAATCTAGATGCATTCTGGCGAGAC
TATACAACTTTTGAACAAACAAGTAATACCAACAAAGAGATCGGTCGAAC
CCATCTGGCTGAAAACCAACCCAAGAATATCGACGCCCGTGCAGAGTTCC
GGGCACGTAAAACAAGACGCGAAGGCTTAACTCTCTCAACGCTACCAGTT
CCCCCACGAGGGCGTGCAAAGGAATCATCACAAGCCCAACAATGGCGCAG
ATTTATTCTACATGAGAGATCAAATCCGTCGTCATTGGCAGACAGTGATC
TTCATGAGCGTGTGATACATGCCTATGAGAGTGCTCTCGCACCAATGCAT
CGGTATCCAGACTTCTGGATAGAGTACCTCTCATATGTTCACAGCACATT
CAGTGTTGAACTAAAGCAAACGCTTGGGAAAGGTCATGAAAATAAGGACT
CAAACTCAAACGCTAACTCAAACCTCGCAAAGAATATGGCAGAATCTTTG
GAGCCTATTCTGGAACGAGCAATCATGGCTGTTCCCCATAGCGTTGCCTT
GCACGCCCACACCAGTTGGTTGTACACTCGAATTGCAGAACCGGGCAAGG
GCGTTGCTGCTCTAGACGCACTGTGCAAGTCACATCCATCTCCTCTCACA
TATGTTCATTTAATGAGAGCTACTCGAAAACACGATGGAAGAGATGCAGC
CAGAAAAGTCTTCGGACGTGCGAGAAAAGATCCGAAAGGAACCCATCCAA
GCGTATATGTCGCAGCTGCATTGATGGAGTTCTCTACTAACAAAGATAGC
AAGGTGGCGCGGAATGTATTTGAGTTCGGGCTAAAGAATTTTGCAAAGAA
TGCGGTTATGACTACGGAATACGTCAACTGGTTATGGGGTACAGGTGATC
TAGAGTACGCCCGGGTGATTCTCAAGAAAGTAATGCCAGATGCAAAAGGC
ACACCAGCGGAAGTTCGTCGATTGTGGGAACTGTGGATTGATCTCGAGGA
ACTGATTGGTGATGTATCCACCGTAGACGAGGTAGAATCACTGTGGAAAG
AAAGCGGAGTCGGGCGCCCCGAAACAGTCGTCAACGAGGTACTGAGAAGA
TCACGCTTCCTTGGGTTCGAAGGCTTTTCCGAAAACGAATTGGGGGCTAT
CAATGGGAACCGAGCTGGCGTTTCAGCCAAGACTACGGGTGCTAGCTCTG
CAGGTGGGGGTCGTCGGGATCCCAGAACTGGTAGAAGGGTTGGTGCATCA
GGTGCAAGCAAGGAAACAATGGGGAACGGAGTATCACCACGGCGAAGCGG
TGATGAGGGGAAGGGGTCTGTTCTGAAGGTGGCCATCGAGATGCTACAAA
GAATGGCATCCGCGCTGCCACCTGTCGCAGCACCACCTCCAAACCCGGAT
GTATTGTTTCGTATGATTGAAACCACCCCCGACTCATTCCTTGACACGCC
TGCAGGCAGAAATGCAGGAGGACCAAGAAATGGAAAGGAAAGTGTTGGCT
CGAAAAAGAGGAAAGTTGAAGAAGCGACACACATTACAACCTCAGCAGCC
GTTGGTATGGGTGTTATGGGAGCATCTGATGTCTTTCGAGCGCGGCAAGC
TGCCAAGCAGGCGAGGACAAGGTAA back to topCoding sequence (CDS) from alignment at tig00004382_pilon:1245103..1247727- >Gchil3256.t1 ID=Gchil3256.t1|Name=Gchil3256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2112bp|location=Sequence derived from alignment at tig00004382_pilon:1245103..1247727- (Gracilaria chilensis NLEC103_M9 male) ATGGACTCAGCTCGCGCCGCTGATGGCGAGCGGCGTGTGGCAACCGATCA CTGGGATATTGACGGATGGCACATTCTCGCCTCCGAAGCCGATAAGGTTT CATTTGACGCCGCAAAGCCCGTGTACGACCGTCTTGTCCAGCAATTCCCC CCCATCGGCAAGTTTTGGCGTTCGTACGCAGAACACCTTGCTCGCGAACA ACCCGAAAACCACGATGCCATCACTGCAATCTACGATCGTGCTGTCAAGA GCGCCCCGACTTCAATTGACCTTTGGCGCAGTTATCTTGCCTACGTCAGT GCTAGGGCTGCGGAAATTCCCGGCTCCAAGCTTGAATCTGATGCCATTGC TGTGCATGAAAGAGCCGTAAAGTGTGCCGGCTTGGATCTTAATGCCCATC CGCTTTGGACGCACTACATCGAGTTCGTCAAGAAGCAAACGATGCTGTCG GATAGTCAACGTCGAGACGCATTACGACGTGTTTATCAACGAGCGGTCCG AACGCCTATGCACAATCTAGATGCATTCTGGCGAGACTATACAACTTTTG AACAAACAAGTAATACCAACAAAGAGATCGGTCGAACCCATCTGGCTGAA AACCAACCCAAGAATATCGACGCCCGTGCAGAGTTCCGGGCACGTAAAAC AAGACGCGAAGGCTTAACTCTCTCAACGCTACCAGTTCCCCCACGAGGGC GTGCAAAGGAATCATCACAAGCCCAACAATGGCGCAGATTTATTCTACAT GAGAGATCAAATCCGTCGTCATTGGCAGACAGTGATCTTCATGAGCGTGT GATACATGCCTATGAGAGTGCTCTCGCACCAATGCATCGGTATCCAGACT TCTGGATAGAGTACCTCTCATATGTTCACAGCACATTCAGTGTTGAACTA AAGCAAACGCTTGGGAAAGGTCATGAAAATAAGGACTCAAACTCAAACGC TAACTCAAACCTCGCAAAGAATATGGCAGAATCTTTGGAGCCTATTCTGG AACGAGCAATCATGGCTGTTCCCCATAGCGTTGCCTTGCACGCCCACACC AGTTGGTTGTACACTCGAATTGCAGAACCGGGCAAGGGCGTTGCTGCTCT AGACGCACTGTGCAAGTCACATCCATCTCCTCTCACATATGTTCATTTAA TGAGAGCTACTCGAAAACACGATGGAAGAGATGCAGCCAGAAAAGTCTTC GGACGTGCGAGAAAAGATCCGAAAGGAACCCATCCAAGCGTATATGTCGC AGCTGCATTGATGGAGTTCTCTACTAACAAAGATAGCAAGGTGGCGCGGA ATGTATTTGAGTTCGGGCTAAAGAATTTTGCAAAGAATGCGGTTATGACT ACGGAATACGTCAACTGGTTATGGGGTACAGGTGATCTAGAGTACGCCCG GGTGATTCTCAAGAAAGTAATGCCAGATGCAAAAGGCACACCAGCGGAAG TTCGTCGATTGTGGGAACTGTGGATTGATCTCGAGGAACTGATTGGTGAT GTATCCACCGTAGACGAGGTAGAATCACTGTGGAAAGAAAGCGGAGTCGG GCGCCCCGAAACAGTCGTCAACGAGGTACTGAGAAGATCACGCTTCCTTG GGTTCGAAGGCTTTTCCGAAAACGAATTGGGGGCTATCAATGGGAACCGA GCTGGCGTTTCAGCCAAGACTACGGGTGCTAGCTCTGCAGGTGGGGGTCG TCGGGATCCCAGAACTGGTAGAAGGGTTGGTGCATCAGGTGCAAGCAAGG AAACAATGGGGAACGGAGTATCACCACGGCGAAGCGGTGATGAGGGGAAG GGGTCTGTTCTGAAGGTGGCCATCGAGATGCTACAAAGAATGGCATCCGC GCTGCCACCTGTCGCAGCACCACCTCCAAACCCGGATGTATTGTTTCGTA TGATTGAAACCACCCCCGACTCATTCCTTGACACGCCTGCAGGCAGAAAT GCAGGAGGACCAAGAAATGGAAAGGAAAGTGTTGGCTCGAAAAAGAGGAA AGTTGAAGAAGCGACACACATTACAACCTCAGCAGCCGTTGGTATGGGTG TTATGGGAGCATCTGATGTCTTTCGAGCGCGGCAAGCTGCCAAGCAGGCG AGGACAAGGTAA back to top
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