Gchil3252.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3252.t1
Unique NameGchil3252.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1236194..1236847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog32264.tetur17g00480.1
Preferred nameCLTA
PFAMsClathrin_lg_ch
Max annot lvl33208|Metazoa
KEGG koko:K04644,ko:K04645
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000139,GO:0000323,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005905,GO:0005938,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0008021,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0022607,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030163,GO:0030276,GO:0030658,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030672,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032050,GO:0032501,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032991,GO:0033218,GO:0034381,GO:0034383,GO:0034622,GO:0036019,GO:0036020,GO:0042277,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044464,GO:0044877,GO:0045202,GO:0045334,GO:0048002,GO:0048268,GO:0048475,GO:0050789,GO:0051020,GO:0051179,GO:0051234,GO:0061024,GO:0065003,GO:0065007,GO:0070382,GO:0071439,GO:0071704,GO:0071840,GO:0071944,GO:0072583,GO:0072686,GO:0097006,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098791,GO:0098793,GO:0098794,GO:0098796,GO:0098797,GO:0098805,GO:0098843,GO:0098852,GO:0099501,GO:0099503,GO:0099568,GO:0099631,GO:0099738,GO:1901564,GO:1901565,GO:1901575,GO:1990075
Evalue5.83e-08
EggNOG OGsKOG4031@1|root,KOG4031@2759|Eukaryota,38EF8@33154|Opisthokonta,3BIZQ@33208|Metazoa,3CZZ0@33213|Bilateria,41YNQ@6656|Arthropoda
DescriptionClathrin is the major protein of the polyhedral coat of coated pits and vesicles
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3252Gchil3252Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1236194..1236847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3252.t1Gchil3252.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1236194..1236847 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3252.t1.stop1Gchil3252.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1236194..1236196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3252.t1.CDS1Gchil3252.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1236194..1236741 -
Gchil3252.t1.CDS2Gchil3252.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1236838..1236847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3252.t1.exon1Gchil3252.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1236194..1236741 -
Gchil3252.t1.exon2Gchil3252.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1236838..1236847 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3252.t1.intron1Gchil3252.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1236742..1236837 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3252.t1.start1Gchil3252.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1236845..1236847 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3252.t1 ID=Gchil3252.t1|Name=Gchil3252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=186bp
MDEDFFKDYPPVGDADQNEAQQPDAAEIPSPDPLQAFVLGGPEDQSPTDQ
QEDEYYGNGGPPPPEDEQPECPAVTEWRASFAKGLQEKIENERKVKAERA
ERARNTLETMHARWKSNVIAAEEANKKKERELIMERDGVISRMSKKGEQP
NWDIIPHLVDMTGKYKEGARDTSRMRQVLLRMKSN*
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spliced messenger RNA

>Gchil3252.t1 ID=Gchil3252.t1|Name=Gchil3252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004382_pilon:1236194..1236847- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAGACTTCTTTAAAGACTATCCTCCAGTTGGAGATGCCGACCA
GAACGAGGCACAACAACCGGACGCTGCCGAAATTCCCTCTCCAGACCCGC
TGCAGGCCTTTGTGCTCGGCGGCCCCGAAGATCAATCTCCGACAGACCAA
CAGGAAGACGAATACTATGGAAACGGTGGGCCTCCACCTCCTGAGGACGA
GCAGCCCGAATGTCCAGCCGTCACAGAATGGCGCGCCTCCTTTGCAAAGG
GTCTTCAAGAGAAGATTGAAAACGAACGGAAAGTCAAGGCTGAGCGCGCG
GAACGCGCCAGAAATACCTTGGAAACCATGCATGCGCGCTGGAAATCGAA
CGTGATTGCTGCGGAAGAAGCGAATAAGAAGAAAGAACGCGAGCTTATTA
TGGAGAGAGATGGCGTTATTTCGCGCATGAGTAAGAAGGGGGAGCAGCCC
AATTGGGATATTATTCCTCATTTGGTTGACATGACTGGCAAGTACAAAGA
GGGTGCGCGCGATACTAGTCGCATGCGACAAGTGTTGTTGCGAATGAAGA
GCAACTAG
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protein sequence of Gchil3252.t1

>Gchil3252.t1 ID=Gchil3252.t1|Name=Gchil3252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=186bp
MDEDFFKDYPPVGDADQNEAQQPDAAEIPSPDPLQAFVLGGPEDQSPTDQ
QEDEYYGNGGPPPPEDEQPECPAVTEWRASFAKGLQEKIENERKVKAERA
ERARNTLETMHARWKSNVIAAEEANKKKERELIMERDGVISRMSKKGEQP
NWDIIPHLVDMTGKYKEGARDTSRMRQVLLRMKSN*
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mRNA from alignment at tig00004382_pilon:1236194..1236847-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3252.t1 ID=Gchil3252.t1|Name=Gchil3252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00004382_pilon:1236194..1236847- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAAGGTAAGTTTCACACCGCGTCCATTTGGCTATCGCTGTCTGC
ACTTAAATTCCATAACCATAGTCCCTGACATGTCCGAAAACCTCCGATTC
GAAAAGACTTCTTTAAAGACTATCCTCCAGTTGGAGATGCCGACCAGAAC
GAGGCACAACAACCGGACGCTGCCGAAATTCCCTCTCCAGACCCGCTGCA
GGCCTTTGTGCTCGGCGGCCCCGAAGATCAATCTCCGACAGACCAACAGG
AAGACGAATACTATGGAAACGGTGGGCCTCCACCTCCTGAGGACGAGCAG
CCCGAATGTCCAGCCGTCACAGAATGGCGCGCCTCCTTTGCAAAGGGTCT
TCAAGAGAAGATTGAAAACGAACGGAAAGTCAAGGCTGAGCGCGCGGAAC
GCGCCAGAAATACCTTGGAAACCATGCATGCGCGCTGGAAATCGAACGTG
ATTGCTGCGGAAGAAGCGAATAAGAAGAAAGAACGCGAGCTTATTATGGA
GAGAGATGGCGTTATTTCGCGCATGAGTAAGAAGGGGGAGCAGCCCAATT
GGGATATTATTCCTCATTTGGTTGACATGACTGGCAAGTACAAAGAGGGT
GCGCGCGATACTAGTCGCATGCGACAAGTGTTGTTGCGAATGAAGAGCAA
CTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:1236194..1236847-

>Gchil3252.t1 ID=Gchil3252.t1|Name=Gchil3252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00004382_pilon:1236194..1236847- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAAGACTTCTTTAAAGACTATCCTCCAGTTGGAGATGCCGACCA
GAACGAGGCACAACAACCGGACGCTGCCGAAATTCCCTCTCCAGACCCGC
TGCAGGCCTTTGTGCTCGGCGGCCCCGAAGATCAATCTCCGACAGACCAA
CAGGAAGACGAATACTATGGAAACGGTGGGCCTCCACCTCCTGAGGACGA
GCAGCCCGAATGTCCAGCCGTCACAGAATGGCGCGCCTCCTTTGCAAAGG
GTCTTCAAGAGAAGATTGAAAACGAACGGAAAGTCAAGGCTGAGCGCGCG
GAACGCGCCAGAAATACCTTGGAAACCATGCATGCGCGCTGGAAATCGAA
CGTGATTGCTGCGGAAGAAGCGAATAAGAAGAAAGAACGCGAGCTTATTA
TGGAGAGAGATGGCGTTATTTCGCGCATGAGTAAGAAGGGGGAGCAGCCC
AATTGGGATATTATTCCTCATTTGGTTGACATGACTGGCAAGTACAAAGA
GGGTGCGCGCGATACTAGTCGCATGCGACAAGTGTTGTTGCGAATGAAGA
GCAACTAG
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