Gchil3249.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3249.t1
Unique NameGchil3249.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1229949..1230599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S156_120V6.1
PFAMsNAC
Max annot lvl35493|Streptophyta
KEGG koko:K03626
Evalue6.75e-48
EggNOG OGsCOG1308@1|root,KOG2239@2759|Eukaryota,37ITV@33090|Viridiplantae,3G80R@35493|Streptophyta
DescriptionNascent polypeptide-associated complex subunit alpha-like protein
COG categoryK
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3249Gchil3249Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1229949..1230599 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3249.t1.start1Gchil3249.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1229949..1229951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3249.t1.CDS1Gchil3249.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1229949..1230599 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3249.t1.exon1Gchil3249.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1229949..1230599 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3249.t1.stop1Gchil3249.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1230597..1230599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3249.t1Gchil3249.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1229949..1230599 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3249.t1 ID=Gchil3249.t1|Name=Gchil3249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=217bp
MTEVKEVIMEDKPSETVVTEDVEDGDPVPELTAPTDETTGQGAKFDPSSI
AKATAMEADGEDESEVKHSRAEKKSRKALQKLGLKPVSGVTRVTVKKNKN
YLFVISKPEVYKSPQSDTYIIFGEAKIEDLSAVAQNRAAEQFRIPEMSTV
NPTVPGGDAAVVEEDEDEGDLDESDLEAKDIELVMSQADVSRAKAVKALK
KSNKDVVDAIMGLTMN*
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spliced messenger RNA

>Gchil3249.t1 ID=Gchil3249.t1|Name=Gchil3249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00004382_pilon:1229949..1230599+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAAGTGAAAGAAGTAATCATGGAAGACAAGCCTTCCGAGACCGT
CGTCACGGAGGATGTCGAGGACGGCGATCCCGTGCCAGAGCTCACCGCGC
CCACCGATGAGACCACTGGTCAAGGAGCGAAATTTGATCCATCGTCGATT
GCGAAGGCCACCGCCATGGAGGCCGACGGTGAAGACGAGAGTGAGGTCAA
ACACTCACGCGCCGAAAAGAAGAGCCGCAAAGCCCTTCAGAAGCTCGGAT
TGAAGCCTGTCTCTGGCGTAACTCGAGTAACTGTCAAGAAGAATAAAAAC
TACTTATTCGTCATCTCCAAGCCCGAAGTTTACAAATCACCCCAATCTGA
CACTTACATCATTTTCGGGGAAGCCAAGATTGAGGATCTGTCCGCCGTTG
CGCAAAACCGTGCGGCAGAGCAGTTCAGGATTCCTGAAATGAGTACGGTA
AACCCGACAGTACCTGGTGGCGATGCGGCAGTCGTGGAGGAGGACGAGGA
TGAAGGGGATCTGGACGAAAGCGATCTGGAGGCGAAGGACATTGAGCTAG
TTATGTCCCAGGCCGACGTGTCACGGGCCAAAGCTGTTAAAGCGCTTAAG
AAGAGCAACAAGGATGTCGTGGACGCCATTATGGGTCTGACAATGAACTA
A
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protein sequence of Gchil3249.t1

>Gchil3249.t1 ID=Gchil3249.t1|Name=Gchil3249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=217bp
MTEVKEVIMEDKPSETVVTEDVEDGDPVPELTAPTDETTGQGAKFDPSSI
AKATAMEADGEDESEVKHSRAEKKSRKALQKLGLKPVSGVTRVTVKKNKN
YLFVISKPEVYKSPQSDTYIIFGEAKIEDLSAVAQNRAAEQFRIPEMSTV
NPTVPGGDAAVVEEDEDEGDLDESDLEAKDIELVMSQADVSRAKAVKALK
KSNKDVVDAIMGLTMN*
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mRNA from alignment at tig00004382_pilon:1229949..1230599+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3249.t1 ID=Gchil3249.t1|Name=Gchil3249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00004382_pilon:1229949..1230599+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAAGTGAAAGAAGTAATCATGGAAGACAAGCCTTCCGAGACCGT
CGTCACGGAGGATGTCGAGGACGGCGATCCCGTGCCAGAGCTCACCGCGC
CCACCGATGAGACCACTGGTCAAGGAGCGAAATTTGATCCATCGTCGATT
GCGAAGGCCACCGCCATGGAGGCCGACGGTGAAGACGAGAGTGAGGTCAA
ACACTCACGCGCCGAAAAGAAGAGCCGCAAAGCCCTTCAGAAGCTCGGAT
TGAAGCCTGTCTCTGGCGTAACTCGAGTAACTGTCAAGAAGAATAAAAAC
TACTTATTCGTCATCTCCAAGCCCGAAGTTTACAAATCACCCCAATCTGA
CACTTACATCATTTTCGGGGAAGCCAAGATTGAGGATCTGTCCGCCGTTG
CGCAAAACCGTGCGGCAGAGCAGTTCAGGATTCCTGAAATGAGTACGGTA
AACCCGACAGTACCTGGTGGCGATGCGGCAGTCGTGGAGGAGGACGAGGA
TGAAGGGGATCTGGACGAAAGCGATCTGGAGGCGAAGGACATTGAGCTAG
TTATGTCCCAGGCCGACGTGTCACGGGCCAAAGCTGTTAAAGCGCTTAAG
AAGAGCAACAAGGATGTCGTGGACGCCATTATGGGTCTGACAATGAACTA
A
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Coding sequence (CDS) from alignment at tig00004382_pilon:1229949..1230599+

>Gchil3249.t1 ID=Gchil3249.t1|Name=Gchil3249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00004382_pilon:1229949..1230599+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAAGTGAAAGAAGTAATCATGGAAGACAAGCCTTCCGAGACCGT
CGTCACGGAGGATGTCGAGGACGGCGATCCCGTGCCAGAGCTCACCGCGC
CCACCGATGAGACCACTGGTCAAGGAGCGAAATTTGATCCATCGTCGATT
GCGAAGGCCACCGCCATGGAGGCCGACGGTGAAGACGAGAGTGAGGTCAA
ACACTCACGCGCCGAAAAGAAGAGCCGCAAAGCCCTTCAGAAGCTCGGAT
TGAAGCCTGTCTCTGGCGTAACTCGAGTAACTGTCAAGAAGAATAAAAAC
TACTTATTCGTCATCTCCAAGCCCGAAGTTTACAAATCACCCCAATCTGA
CACTTACATCATTTTCGGGGAAGCCAAGATTGAGGATCTGTCCGCCGTTG
CGCAAAACCGTGCGGCAGAGCAGTTCAGGATTCCTGAAATGAGTACGGTA
AACCCGACAGTACCTGGTGGCGATGCGGCAGTCGTGGAGGAGGACGAGGA
TGAAGGGGATCTGGACGAAAGCGATCTGGAGGCGAAGGACATTGAGCTAG
TTATGTCCCAGGCCGACGTGTCACGGGCCAAAGCTGTTAAAGCGCTTAAG
AAGAGCAACAAGGATGTCGTGGACGCCATTATGGGTCTGACAATGAACTA
A
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