Gchil3247.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3247.t1
Unique Name	Gchil3247.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	636

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1225695..1228342 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1487953.JMKF01000045_gene2697
PFAMs	Peptidase_M48
Max annot lvl	1117\|Cyanobacteria
Evalue	1.1e-86
EggNOG OGs	COG0501@1\|root,COG0501@2\|Bacteria,1G0EW@1117\|Cyanobacteria,1H6XY@1150\|Oscillatoriales
Description	Zn-dependent protease with chaperone function
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3247	Gchil3247	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1225695..1228342 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3247.t1	Gchil3247.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1225695..1228342 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3247.t1.start1	Gchil3247.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1225695..1225697 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3247.t1.CDS1	Gchil3247.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1225695..1226495 +
Gchil3247.t1.CDS2	Gchil3247.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1227236..1228342 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3247.t1.exon1	Gchil3247.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1225695..1226495 +
Gchil3247.t1.exon2	Gchil3247.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1227236..1228342 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3247.t1.intron1	Gchil3247.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004382_pilon 1226496..1227235 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3247.t1.stop1	Gchil3247.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1228340..1228342 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1225695..1228342+
coding sequence from alignment at tig00004382_pilon:1225695..1228342+

mRNA sequence

>Gchil3247.t1 ID=Gchil3247.t1|Name=Gchil3247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=636bp
MKTERSLKLIKLDGSIVESAKGSTFIAALEEAGEQDLVILGLKMHQIKSI
LSTLHHVVGPKTVLLGTQNGIPWWYFQEYNGPEEFKDRAVESVDPGGELK
SSIDAKKLIATVVYPAAIVASPGVIKHIEGIRFPVGEPNGKTTERVQWVS
NMLIDAGFKSPVLADVRGEMWLKLWGTVAVNPLSALTHATLDVLCTVPAG
REVVVRVMKEVEKVANRLGSKMRLPIERRVNGAAKVGKHKTSMLQDVEAG
RELEIETIMGAIVEMARVERNRWTQRLYLGFQIQVFDKLTILRYKTLPNV
MAFVAPFVSVATPSQTNFVSAKAPANFIRSNPRFRRTLTTVSSSASTASD
SIKSLSSRVRFPSLRPDEFRHPVDVRATRALQSLFGLEWILRSVLKTAEQ
MLFFENISTGVRVSERQYPSMHAMLLEACQVLDVPVPQLYVRQNPVPNAY
TLAVQGNKPFIVVHSALIELVTPQELQAVLAHELGHLKSEHGVWVTMANL
LLLLSSTTLGNTLGSIVYEVLNRQLLAWQRAAELTCDRAMLLVMQDKNIA
MSALMKLTGGVSKYSDEMDLDEFLAQADQFDEASKTRLGSFLRQSMTVSS
THPLPILRARELKRWSESNHFRSLIRSGKPMRESS*

spliced messenger RNA

>Gchil3247.t1 ID=Gchil3247.t1|Name=Gchil3247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1908bp|location=Sequence derived from alignment at tig00004382_pilon:1225695..1228342+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACGGAACGATCTCTGAAATTGATAAAACTCGATGGGAGCATTGT
TGAATCAGCAAAGGGTTCTACATTCATTGCGGCACTCGAAGAAGCAGGAG
AACAGGATCTTGTCATACTTGGTTTGAAAATGCATCAAATCAAATCCATA
CTATCCACTCTTCATCACGTAGTTGGTCCGAAAACTGTTTTGTTAGGAAC
GCAAAACGGTATCCCTTGGTGGTACTTTCAAGAATACAATGGGCCCGAAG
AATTCAAAGACAGAGCTGTGGAAAGTGTTGATCCTGGAGGAGAGCTCAAA
AGCTCGATAGACGCTAAAAAGTTGATTGCGACTGTGGTGTACCCAGCTGC
TATTGTTGCATCACCTGGCGTAATAAAACATATCGAAGGCATACGTTTTC
CAGTTGGAGAACCCAACGGGAAGACTACAGAAAGGGTTCAGTGGGTGTCC
AACATGTTAATCGACGCCGGATTTAAGTCACCTGTGTTAGCGGATGTGCG
GGGCGAGATGTGGCTTAAACTGTGGGGAACCGTAGCCGTAAATCCGCTTT
CTGCACTCACTCACGCTACATTAGATGTCTTGTGCACAGTACCAGCTGGT
CGAGAGGTTGTTGTGCGTGTGATGAAAGAAGTAGAAAAGGTTGCAAATCG
ACTGGGCTCAAAAATGAGGCTACCCATCGAACGGCGAGTAAATGGGGCTG
CAAAGGTTGGAAAGCATAAAACATCAATGCTGCAAGATGTGGAAGCAGGA
CGTGAACTGGAAATCGAGACCATTATGGGTGCTATCGTAGAGATGGCTCG
TGTTGAAAGGAACCGCTGGACTCAACGTCTTTATCTCGGATTCCAAATCC
AGGTCTTTGACAAACTAACGATTTTGAGGTACAAAACGCTACCGAATGTG
ATGGCTTTCGTTGCTCCTTTTGTAAGCGTTGCGACTCCATCACAAACCAA
TTTCGTTTCAGCGAAAGCTCCAGCAAATTTTATTCGTTCGAACCCGCGGT
TCCGCCGAACCTTGACGACAGTATCGAGCTCGGCTTCAACCGCAAGCGAT
TCCATCAAGTCGCTGTCATCGCGGGTAAGGTTTCCTTCTCTACGTCCAGA
TGAGTTCCGTCATCCTGTCGATGTACGCGCGACACGAGCTCTGCAATCTC
TTTTCGGCCTTGAGTGGATTCTTCGCTCTGTTCTCAAGACTGCTGAACAG
ATGCTCTTTTTCGAAAACATTTCTACCGGTGTCAGAGTTTCCGAAAGGCA
GTACCCATCTATGCATGCCATGCTGCTCGAGGCATGCCAAGTCTTGGACG
TACCAGTTCCTCAGCTGTATGTTCGCCAAAACCCAGTACCAAATGCGTAC
ACCCTTGCAGTGCAAGGAAACAAGCCGTTTATAGTTGTACATTCTGCACT
TATCGAGCTTGTCACGCCCCAAGAGCTACAAGCTGTTTTGGCACATGAGT
TGGGACACTTGAAGAGCGAACATGGCGTATGGGTCACAATGGCCAATTTA
TTGCTTTTGTTGTCGTCGACCACGCTGGGAAATACTCTTGGAAGTATCGT
TTATGAAGTTCTGAACAGGCAGCTACTGGCGTGGCAACGTGCCGCAGAAC
TCACATGCGATAGAGCAATGTTGCTTGTCATGCAGGACAAGAACATTGCA
ATGTCCGCCCTCATGAAACTTACCGGCGGTGTATCAAAGTATTCCGATGA
GATGGATCTAGATGAGTTTTTGGCTCAAGCTGACCAGTTCGATGAAGCAT
CAAAGACGAGACTTGGAAGTTTTTTGCGACAATCAATGACCGTCTCAAGC
ACTCATCCTTTGCCCATTTTGCGCGCCCGGGAACTTAAACGATGGTCAGA
ATCAAACCACTTTCGAAGTTTGATACGTTCGGGGAAGCCGATGCGAGAGT
CATCGTAG

protein sequence of Gchil3247.t1

>Gchil3247.t1 ID=Gchil3247.t1|Name=Gchil3247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=636bp
MKTERSLKLIKLDGSIVESAKGSTFIAALEEAGEQDLVILGLKMHQIKSI
LSTLHHVVGPKTVLLGTQNGIPWWYFQEYNGPEEFKDRAVESVDPGGELK
SSIDAKKLIATVVYPAAIVASPGVIKHIEGIRFPVGEPNGKTTERVQWVS
NMLIDAGFKSPVLADVRGEMWLKLWGTVAVNPLSALTHATLDVLCTVPAG
REVVVRVMKEVEKVANRLGSKMRLPIERRVNGAAKVGKHKTSMLQDVEAG
RELEIETIMGAIVEMARVERNRWTQRLYLGFQIQVFDKLTILRYKTLPNV
MAFVAPFVSVATPSQTNFVSAKAPANFIRSNPRFRRTLTTVSSSASTASD
SIKSLSSRVRFPSLRPDEFRHPVDVRATRALQSLFGLEWILRSVLKTAEQ
MLFFENISTGVRVSERQYPSMHAMLLEACQVLDVPVPQLYVRQNPVPNAY
TLAVQGNKPFIVVHSALIELVTPQELQAVLAHELGHLKSEHGVWVTMANL
LLLLSSTTLGNTLGSIVYEVLNRQLLAWQRAAELTCDRAMLLVMQDKNIA
MSALMKLTGGVSKYSDEMDLDEFLAQADQFDEASKTRLGSFLRQSMTVSS
THPLPILRARELKRWSESNHFRSLIRSGKPMRESS*

mRNA from alignment at tig00004382_pilon:1225695..1228342+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3247.t1 ID=Gchil3247.t1|Name=Gchil3247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2648bp|location=Sequence derived from alignment at tig00004382_pilon:1225695..1228342+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACGGAACGATCTCTGAAATTGATAAAACTCGATGGGAGCATTGT
TGAATCAGCAAAGGGTTCTACATTCATTGCGGCACTCGAAGAAGCAGGAG
AACAGGATCTTGTCATACTTGGTTTGAAAATGCATCAAATCAAATCCATA
CTATCCACTCTTCATCACGTAGTTGGTCCGAAAACTGTTTTGTTAGGAAC
GCAAAACGGTATCCCTTGGTGGTACTTTCAAGAATACAATGGGCCCGAAG
AATTCAAAGACAGAGCTGTGGAAAGTGTTGATCCTGGAGGAGAGCTCAAA
AGCTCGATAGACGCTAAAAAGTTGATTGCGACTGTGGTGTACCCAGCTGC
TATTGTTGCATCACCTGGCGTAATAAAACATATCGAAGGCATACGTTTTC
CAGTTGGAGAACCCAACGGGAAGACTACAGAAAGGGTTCAGTGGGTGTCC
AACATGTTAATCGACGCCGGATTTAAGTCACCTGTGTTAGCGGATGTGCG
GGGCGAGATGTGGCTTAAACTGTGGGGAACCGTAGCCGTAAATCCGCTTT
CTGCACTCACTCACGCTACATTAGATGTCTTGTGCACAGTACCAGCTGGT
CGAGAGGTTGTTGTGCGTGTGATGAAAGAAGTAGAAAAGGTTGCAAATCG
ACTGGGCTCAAAAATGAGGCTACCCATCGAACGGCGAGTAAATGGGGCTG
CAAAGGTTGGAAAGCATAAAACATCAATGCTGCAAGATGTGGAAGCAGGA
CGTGAACTGGAAATCGAGACCATTATGGGTGCTATCGTAGAGATGGCTCG
TGTATGTGGTGAGGATACGCCAAGTATAGACACTATATATGGCACAATAA
GAATGCTGGCCTACGTAATGAAGGAAGAGAAGTCGAAGGTTTGTTTGCTA
CCTCTTGACGGGTAGCAAGTCGTCGAGAAATGGATTATCCGGGGTGTCAT
CGTTCGCCTTCAATCCACCTTTTAAAAGCTCCTATCGGATGGTGCTCCAT
TCAATGACACGTCGAGAAACTGACCAAAGTTTCTATATACGCCCCGGACA
CCCATACTTCTACAAGCCAAGTATCAATCTTACACTGCTTTGGGAAAAAC
CACATCTTCGCGAAGAATAAATGCTCTTGAACTGACAACCAGCGGACGTC
AGGAGAAATGAAAGTACCATCCCCTACATGTACAGTAGCTAGACCGAGAT
ATTATTTTCGAAGTATTCTTCTATTGGCTGAACATGCACAACTCTTTGTC
TGTAGACACTCGGTGGCGGGGTGTGGCGTCCAAAACAACGTCATAAATTA
ATTCATTTTCGCAATCCAGCTATGGAACAACAAAACCCAAGGAATGCCGA
GTAAAGTATCTCTGACAACACTGCCCTTCACCCAGCAGCCATGATAAGTG
TAGGCGAGGAAGTTTTTTATCACAGCTCTGTCTTCGACGGTGCGCTGCTG
CATACGCAGAGGAACTTCGATTGGCATCTTGACCAGAGAGGTTGAAGTGC
TTCAGGGATCTGCTCCACCTTTCTGCAACCTGAACGGCTAGGTTGAAAGG
AACCGCTGGACTCAACGTCTTTATCTCGGATTCCAAATCCAGGTCTTTGA
CAAACTAACGATTTTGAGGTACAAAACGCTACCGAATGTGATGGCTTTCG
TTGCTCCTTTTGTAAGCGTTGCGACTCCATCACAAACCAATTTCGTTTCA
GCGAAAGCTCCAGCAAATTTTATTCGTTCGAACCCGCGGTTCCGCCGAAC
CTTGACGACAGTATCGAGCTCGGCTTCAACCGCAAGCGATTCCATCAAGT
CGCTGTCATCGCGGGTAAGGTTTCCTTCTCTACGTCCAGATGAGTTCCGT
CATCCTGTCGATGTACGCGCGACACGAGCTCTGCAATCTCTTTTCGGCCT
TGAGTGGATTCTTCGCTCTGTTCTCAAGACTGCTGAACAGATGCTCTTTT
TCGAAAACATTTCTACCGGTGTCAGAGTTTCCGAAAGGCAGTACCCATCT
ATGCATGCCATGCTGCTCGAGGCATGCCAAGTCTTGGACGTACCAGTTCC
TCAGCTGTATGTTCGCCAAAACCCAGTACCAAATGCGTACACCCTTGCAG
TGCAAGGAAACAAGCCGTTTATAGTTGTACATTCTGCACTTATCGAGCTT
GTCACGCCCCAAGAGCTACAAGCTGTTTTGGCACATGAGTTGGGACACTT
GAAGAGCGAACATGGCGTATGGGTCACAATGGCCAATTTATTGCTTTTGT
TGTCGTCGACCACGCTGGGAAATACTCTTGGAAGTATCGTTTATGAAGTT
CTGAACAGGCAGCTACTGGCGTGGCAACGTGCCGCAGAACTCACATGCGA
TAGAGCAATGTTGCTTGTCATGCAGGACAAGAACATTGCAATGTCCGCCC
TCATGAAACTTACCGGCGGTGTATCAAAGTATTCCGATGAGATGGATCTA
GATGAGTTTTTGGCTCAAGCTGACCAGTTCGATGAAGCATCAAAGACGAG
ACTTGGAAGTTTTTTGCGACAATCAATGACCGTCTCAAGCACTCATCCTT
TGCCCATTTTGCGCGCCCGGGAACTTAAACGATGGTCAGAATCAAACCAC
TTTCGAAGTTTGATACGTTCGGGGAAGCCGATGCGAGAGTCATCGTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:1225695..1228342+

>Gchil3247.t1 ID=Gchil3247.t1|Name=Gchil3247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1908bp|location=Sequence derived from alignment at tig00004382_pilon:1225695..1228342+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACGGAACGATCTCTGAAATTGATAAAACTCGATGGGAGCATTGT
TGAATCAGCAAAGGGTTCTACATTCATTGCGGCACTCGAAGAAGCAGGAG
AACAGGATCTTGTCATACTTGGTTTGAAAATGCATCAAATCAAATCCATA
CTATCCACTCTTCATCACGTAGTTGGTCCGAAAACTGTTTTGTTAGGAAC
GCAAAACGGTATCCCTTGGTGGTACTTTCAAGAATACAATGGGCCCGAAG
AATTCAAAGACAGAGCTGTGGAAAGTGTTGATCCTGGAGGAGAGCTCAAA
AGCTCGATAGACGCTAAAAAGTTGATTGCGACTGTGGTGTACCCAGCTGC
TATTGTTGCATCACCTGGCGTAATAAAACATATCGAAGGCATACGTTTTC
CAGTTGGAGAACCCAACGGGAAGACTACAGAAAGGGTTCAGTGGGTGTCC
AACATGTTAATCGACGCCGGATTTAAGTCACCTGTGTTAGCGGATGTGCG
GGGCGAGATGTGGCTTAAACTGTGGGGAACCGTAGCCGTAAATCCGCTTT
CTGCACTCACTCACGCTACATTAGATGTCTTGTGCACAGTACCAGCTGGT
CGAGAGGTTGTTGTGCGTGTGATGAAAGAAGTAGAAAAGGTTGCAAATCG
ACTGGGCTCAAAAATGAGGCTACCCATCGAACGGCGAGTAAATGGGGCTG
CAAAGGTTGGAAAGCATAAAACATCAATGCTGCAAGATGTGGAAGCAGGA
CGTGAACTGGAAATCGAGACCATTATGGGTGCTATCGTAGAGATGGCTCG
TGTTGAAAGGAACCGCTGGACTCAACGTCTTTATCTCGGATTCCAAATCC
AGGTCTTTGACAAACTAACGATTTTGAGGTACAAAACGCTACCGAATGTG
ATGGCTTTCGTTGCTCCTTTTGTAAGCGTTGCGACTCCATCACAAACCAA
TTTCGTTTCAGCGAAAGCTCCAGCAAATTTTATTCGTTCGAACCCGCGGT
TCCGCCGAACCTTGACGACAGTATCGAGCTCGGCTTCAACCGCAAGCGAT
TCCATCAAGTCGCTGTCATCGCGGGTAAGGTTTCCTTCTCTACGTCCAGA
TGAGTTCCGTCATCCTGTCGATGTACGCGCGACACGAGCTCTGCAATCTC
TTTTCGGCCTTGAGTGGATTCTTCGCTCTGTTCTCAAGACTGCTGAACAG
ATGCTCTTTTTCGAAAACATTTCTACCGGTGTCAGAGTTTCCGAAAGGCA
GTACCCATCTATGCATGCCATGCTGCTCGAGGCATGCCAAGTCTTGGACG
TACCAGTTCCTCAGCTGTATGTTCGCCAAAACCCAGTACCAAATGCGTAC
ACCCTTGCAGTGCAAGGAAACAAGCCGTTTATAGTTGTACATTCTGCACT
TATCGAGCTTGTCACGCCCCAAGAGCTACAAGCTGTTTTGGCACATGAGT
TGGGACACTTGAAGAGCGAACATGGCGTATGGGTCACAATGGCCAATTTA
TTGCTTTTGTTGTCGTCGACCACGCTGGGAAATACTCTTGGAAGTATCGT
TTATGAAGTTCTGAACAGGCAGCTACTGGCGTGGCAACGTGCCGCAGAAC
TCACATGCGATAGAGCAATGTTGCTTGTCATGCAGGACAAGAACATTGCA
ATGTCCGCCCTCATGAAACTTACCGGCGGTGTATCAAAGTATTCCGATGA
GATGGATCTAGATGAGTTTTTGGCTCAAGCTGACCAGTTCGATGAAGCAT
CAAAGACGAGACTTGGAAGTTTTTTGCGACAATCAATGACCGTCTCAAGC
ACTCATCCTTTGCCCATTTTGCGCGCCCGGGAACTTAAACGATGGTCAGA
ATCAAACCACTTTCGAAGTTTGATACGTTCGGGGAAGCCGATGCGAGAGT
CATCGTAG