Gchil3245.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3245.t1
Unique NameGchil3245.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1223271..1224106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ13307
PFAMsDUF1499
Max annot lvl35493|Streptophyta
Evalue8.22e-32
EggNOG OGsCOG4446@1|root,2QPJZ@2759|Eukaryota,37K1E@33090|Viridiplantae,3GGYS@35493|Streptophyta
DescriptionProtein of unknown function (DUF1499)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3245Gchil3245Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1223271..1224106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3245.t1Gchil3245.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1223271..1224106 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3245.t1.start1Gchil3245.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1223271..1223273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3245.t1.CDS1Gchil3245.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1223271..1223483 +
Gchil3245.t1.CDS2Gchil3245.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1223562..1223730 +
Gchil3245.t1.CDS3Gchil3245.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1223822..1223991 +
Gchil3245.t1.CDS4Gchil3245.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1224074..1224106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3245.t1.exon1Gchil3245.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1223271..1223483 +
Gchil3245.t1.exon2Gchil3245.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1223562..1223730 +
Gchil3245.t1.exon3Gchil3245.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1223822..1223991 +
Gchil3245.t1.exon4Gchil3245.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1224074..1224106 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3245.t1.intron1Gchil3245.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1223484..1223561 +
Gchil3245.t1.intron2Gchil3245.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1223731..1223821 +
Gchil3245.t1.intron3Gchil3245.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1223992..1224073 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3245.t1.stop1Gchil3245.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1224104..1224106 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3245.t1 ID=Gchil3245.t1|Name=Gchil3245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=195bp
MVGGNEMETGLKVLLVGGAVALSAMVALPRDADAAIFHFRGQRPQNIGVQ
YGGYLQGCPSSPNCISSMEDPYDSHYVPSWTYNSGNSGGKKTIQEAINDV
TKVIEEFPRATIVTSEETTSEAGKGHYIYAEFESKLMGFVDDVEFFFQPD
SQTVEYRSASRLGEGDFDANRKRIRDLRQALQQMDNRWASTGYN*
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spliced messenger RNA

>Gchil3245.t1 ID=Gchil3245.t1|Name=Gchil3245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00004382_pilon:1223271..1224106+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGAGGAAACGAAATGGAGACTGGTCTTAAAGTTCTTCTTGTGGG
TGGGGCAGTTGCATTATCCGCAATGGTGGCGTTACCGAGGGATGCAGATG
CTGCCATCTTTCATTTCCGAGGACAGCGTCCGCAGAATATTGGCGTACAA
TATGGTGGTTATCTCCAGGGTTGTCCGTCTTCTCCAAATTGTATTTCTTC
CATGGAAGATCCATACGATAGCCATTATGTACCATCTTGGACGTACAATT
CTGGTAACAGCGGGGGCAAAAAGACTATACAGGAGGCCATTAACGATGTG
ACGAAAGTTATCGAAGAATTCCCTCGGGCAACAATCGTCACCAGCGAAGA
AACAACTAGTGAAGCTGGTAAAGGCCATTATATTTATGCGGAGTTTGAGT
CGAAGCTCATGGGATTTGTGGATGATGTCGAGTTCTTTTTCCAACCAGAC
AGCCAAACAGTCGAATATCGGAGCGCTTCCCGACTCGGCGAGGGTGACTT
CGATGCGAATCGTAAGAGGATTCGTGACTTGCGCCAAGCTTTGCAGCAAA
TGGACAACCGATGGGCATCTACCGGATACAATTAA
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protein sequence of Gchil3245.t1

>Gchil3245.t1 ID=Gchil3245.t1|Name=Gchil3245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=195bp
MVGGNEMETGLKVLLVGGAVALSAMVALPRDADAAIFHFRGQRPQNIGVQ
YGGYLQGCPSSPNCISSMEDPYDSHYVPSWTYNSGNSGGKKTIQEAINDV
TKVIEEFPRATIVTSEETTSEAGKGHYIYAEFESKLMGFVDDVEFFFQPD
SQTVEYRSASRLGEGDFDANRKRIRDLRQALQQMDNRWASTGYN*
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mRNA from alignment at tig00004382_pilon:1223271..1224106+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3245.t1 ID=Gchil3245.t1|Name=Gchil3245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=836bp|location=Sequence derived from alignment at tig00004382_pilon:1223271..1224106+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGAGGAAACGAAATGGAGACTGGTCTTAAAGTTCTTCTTGTGGG
TGGGGCAGTTGCATTATCCGCAATGGTGGCGTTACCGAGGGATGCAGATG
CTGCCATCTTTCATTTCCGAGGACAGCGTCCGCAGAATATTGGCGTACAA
TATGGTGGTTATCTCCAGGGTTGTCCGTCTTCTCCAAATTGTATTTCTTC
CATGGAAGATCCAGTAAGTTCGGAACAATAACAACAGGTCGAGGAGTCCG
ATTCTAACTCTTTAAAACCGATTTATCCTTCCTTTCCATAGTACGATAGC
CATTATGTACCATCTTGGACGTACAATTCTGGTAACAGCGGGGGCAAAAA
GACTATACAGGAGGCCATTAACGATGTGACGAAAGTTATCGAAGAATTCC
CTCGGGCAACAATCGTCACCAGCGAAGAAACAACTAGTGAAGCTGGTAAA
GGCCATTATAGTAAGTATACAATGAAATTGTTAGAGGATCGGATTTTCTC
ATCTAACAACCATGTATCATGTGGATGACATGCGACGACATCTTTCGCCA
GTTTATGCGGAGTTTGAGTCGAAGCTCATGGGATTTGTGGATGATGTCGA
GTTCTTTTTCCAACCAGACAGCCAAACAGTCGAATATCGGAGCGCTTCCC
GACTCGGCGAGGGTGACTTCGATGCGAATCGTAAGAGGATTCGTGACTTG
CGCCAAGCTTTGCAGCAAATGGTGAGTTCCCTGCTCAATGTATTTTACGT
CACACAAGAACGAAACTAACATACTTCCTTTTTTTTCTGCTTTCATTGTT
CAGGACAACCGATGGGCATCTACCGGATACAATTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1223271..1224106+

>Gchil3245.t1 ID=Gchil3245.t1|Name=Gchil3245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00004382_pilon:1223271..1224106+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGAGGAAACGAAATGGAGACTGGTCTTAAAGTTCTTCTTGTGGG
TGGGGCAGTTGCATTATCCGCAATGGTGGCGTTACCGAGGGATGCAGATG
CTGCCATCTTTCATTTCCGAGGACAGCGTCCGCAGAATATTGGCGTACAA
TATGGTGGTTATCTCCAGGGTTGTCCGTCTTCTCCAAATTGTATTTCTTC
CATGGAAGATCCATACGATAGCCATTATGTACCATCTTGGACGTACAATT
CTGGTAACAGCGGGGGCAAAAAGACTATACAGGAGGCCATTAACGATGTG
ACGAAAGTTATCGAAGAATTCCCTCGGGCAACAATCGTCACCAGCGAAGA
AACAACTAGTGAAGCTGGTAAAGGCCATTATATTTATGCGGAGTTTGAGT
CGAAGCTCATGGGATTTGTGGATGATGTCGAGTTCTTTTTCCAACCAGAC
AGCCAAACAGTCGAATATCGGAGCGCTTCCCGACTCGGCGAGGGTGACTT
CGATGCGAATCGTAAGAGGATTCGTGACTTGCGCCAAGCTTTGCAGCAAA
TGGACAACCGATGGGCATCTACCGGATACAATTAA
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