Gchil3241.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3241.t1
Unique NameGchil3241.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1216006..1216854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926550.CLDAP_09190
Preferred namemenH
PFAMsAbhydrolase_1,Abhydrolase_6
Max annot lvl200795|Chloroflexi
KEGG rclassRC02148,RC02475
KEGG koko:K08680
KEGG ReactionR08166
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00116
Evalue1.79e-29
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,2GBHH@200795|Chloroflexi
EC4.2.99.20
DescriptionCatalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC)
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3241Gchil3241Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1216006..1216854 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3241.t1.stop1Gchil3241.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1216006..1216008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3241.t1.CDS1Gchil3241.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1216006..1216854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3241.t1.exon1Gchil3241.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1216006..1216854 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3241.t1.start1Gchil3241.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1216852..1216854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3241.t1Gchil3241.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1216006..1216854 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3241.t1 ID=Gchil3241.t1|Name=Gchil3241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=283bp
MKTLGEGRPAALFLHDFMTDSRLFQPLFAQTNFPPGNLIACDLRGYGRST
DPTGVYSHIDDIDTVLDHLGIERVHLVGAGMGGVVALEYAISRENKTNSV
AIFGSGLPGYRWSAKHFMDVSEARFVGRMRSIGAKYVLGSESAQDPVRWK
QSFISNNETWVNLLRNGDKQVAKRLLSMAKTYRGYHFFMADPVTPQLSDV
DPLRMRLGEVQVPALVAVGKNDSDDFQQIAKEISERVGAQLFHIDDARHF
VPLEQPFATAELLKQFWSTVSEGKNSDVLDSR*
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spliced messenger RNA

>Gchil3241.t1 ID=Gchil3241.t1|Name=Gchil3241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00004382_pilon:1216006..1216854- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTTTGGGAGAAGGAAGGCCTGCTGCTCTTTTTCTTCATGACTT
TATGACGGACAGCCGCCTTTTTCAACCCCTCTTTGCCCAGACAAATTTTC
CTCCTGGCAATCTGATTGCTTGTGATCTACGTGGGTATGGAAGGTCGACT
GATCCCACGGGTGTTTACTCACACATTGATGACATTGATACGGTTCTGGA
CCACTTGGGAATCGAACGAGTGCATCTTGTCGGTGCGGGAATGGGTGGAG
TTGTTGCATTAGAATATGCCATATCTCGGGAAAACAAAACAAACAGTGTC
GCGATATTTGGTAGTGGTCTTCCCGGCTACCGTTGGAGCGCGAAACACTT
TATGGATGTATCCGAAGCCCGTTTTGTTGGCCGAATGCGCTCAATCGGAG
CAAAATATGTCCTTGGTAGTGAATCTGCCCAAGATCCCGTAAGATGGAAG
CAGTCATTCATCTCAAATAATGAAACGTGGGTAAACCTCCTTCGAAATGG
TGATAAGCAAGTGGCAAAACGCCTACTTTCGATGGCTAAAACGTACAGAG
GATATCATTTCTTCATGGCTGATCCTGTCACCCCTCAACTCTCGGATGTG
GATCCATTACGTATGAGACTCGGAGAGGTTCAAGTTCCTGCGCTGGTTGC
CGTTGGAAAGAATGACAGCGACGATTTTCAACAAATCGCGAAAGAGATAT
CTGAACGAGTTGGCGCACAACTTTTTCATATTGACGACGCAAGGCATTTT
GTTCCATTGGAGCAGCCGTTTGCGACAGCAGAACTTCTGAAACAATTCTG
GTCGACTGTTTCCGAGGGAAAGAACAGTGACGTACTGGATTCAAGATGA
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protein sequence of Gchil3241.t1

>Gchil3241.t1 ID=Gchil3241.t1|Name=Gchil3241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=283bp
MKTLGEGRPAALFLHDFMTDSRLFQPLFAQTNFPPGNLIACDLRGYGRST
DPTGVYSHIDDIDTVLDHLGIERVHLVGAGMGGVVALEYAISRENKTNSV
AIFGSGLPGYRWSAKHFMDVSEARFVGRMRSIGAKYVLGSESAQDPVRWK
QSFISNNETWVNLLRNGDKQVAKRLLSMAKTYRGYHFFMADPVTPQLSDV
DPLRMRLGEVQVPALVAVGKNDSDDFQQIAKEISERVGAQLFHIDDARHF
VPLEQPFATAELLKQFWSTVSEGKNSDVLDSR*
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mRNA from alignment at tig00004382_pilon:1216006..1216854-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3241.t1 ID=Gchil3241.t1|Name=Gchil3241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00004382_pilon:1216006..1216854- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACTTTGGGAGAAGGAAGGCCTGCTGCTCTTTTTCTTCATGACTT
TATGACGGACAGCCGCCTTTTTCAACCCCTCTTTGCCCAGACAAATTTTC
CTCCTGGCAATCTGATTGCTTGTGATCTACGTGGGTATGGAAGGTCGACT
GATCCCACGGGTGTTTACTCACACATTGATGACATTGATACGGTTCTGGA
CCACTTGGGAATCGAACGAGTGCATCTTGTCGGTGCGGGAATGGGTGGAG
TTGTTGCATTAGAATATGCCATATCTCGGGAAAACAAAACAAACAGTGTC
GCGATATTTGGTAGTGGTCTTCCCGGCTACCGTTGGAGCGCGAAACACTT
TATGGATGTATCCGAAGCCCGTTTTGTTGGCCGAATGCGCTCAATCGGAG
CAAAATATGTCCTTGGTAGTGAATCTGCCCAAGATCCCGTAAGATGGAAG
CAGTCATTCATCTCAAATAATGAAACGTGGGTAAACCTCCTTCGAAATGG
TGATAAGCAAGTGGCAAAACGCCTACTTTCGATGGCTAAAACGTACAGAG
GATATCATTTCTTCATGGCTGATCCTGTCACCCCTCAACTCTCGGATGTG
GATCCATTACGTATGAGACTCGGAGAGGTTCAAGTTCCTGCGCTGGTTGC
CGTTGGAAAGAATGACAGCGACGATTTTCAACAAATCGCGAAAGAGATAT
CTGAACGAGTTGGCGCACAACTTTTTCATATTGACGACGCAAGGCATTTT
GTTCCATTGGAGCAGCCGTTTGCGACAGCAGAACTTCTGAAACAATTCTG
GTCGACTGTTTCCGAGGGAAAGAACAGTGACGTACTGGATTCAAGATGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1216006..1216854-

>Gchil3241.t1 ID=Gchil3241.t1|Name=Gchil3241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00004382_pilon:1216006..1216854- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACTTTGGGAGAAGGAAGGCCTGCTGCTCTTTTTCTTCATGACTT
TATGACGGACAGCCGCCTTTTTCAACCCCTCTTTGCCCAGACAAATTTTC
CTCCTGGCAATCTGATTGCTTGTGATCTACGTGGGTATGGAAGGTCGACT
GATCCCACGGGTGTTTACTCACACATTGATGACATTGATACGGTTCTGGA
CCACTTGGGAATCGAACGAGTGCATCTTGTCGGTGCGGGAATGGGTGGAG
TTGTTGCATTAGAATATGCCATATCTCGGGAAAACAAAACAAACAGTGTC
GCGATATTTGGTAGTGGTCTTCCCGGCTACCGTTGGAGCGCGAAACACTT
TATGGATGTATCCGAAGCCCGTTTTGTTGGCCGAATGCGCTCAATCGGAG
CAAAATATGTCCTTGGTAGTGAATCTGCCCAAGATCCCGTAAGATGGAAG
CAGTCATTCATCTCAAATAATGAAACGTGGGTAAACCTCCTTCGAAATGG
TGATAAGCAAGTGGCAAAACGCCTACTTTCGATGGCTAAAACGTACAGAG
GATATCATTTCTTCATGGCTGATCCTGTCACCCCTCAACTCTCGGATGTG
GATCCATTACGTATGAGACTCGGAGAGGTTCAAGTTCCTGCGCTGGTTGC
CGTTGGAAAGAATGACAGCGACGATTTTCAACAAATCGCGAAAGAGATAT
CTGAACGAGTTGGCGCACAACTTTTTCATATTGACGACGCAAGGCATTTT
GTTCCATTGGAGCAGCCGTTTGCGACAGCAGAACTTCTGAAACAATTCTG
GTCGACTGTTTCCGAGGGAAAGAACAGTGACGTACTGGATTCAAGATGA
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