Gchil3237.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3237.t1
Unique NameGchil3237.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length758
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1201160..1204207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3237Gchil3237Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1201160..1204207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3237.t1Gchil3237.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1201160..1204207 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3237.t1.start1Gchil3237.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1201160..1201162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3237.t1.CDS1Gchil3237.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1201160..1203114 +
Gchil3237.t1.CDS2Gchil3237.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1203889..1204207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3237.t1.exon1Gchil3237.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1201160..1203114 +
Gchil3237.t1.exon2Gchil3237.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1203889..1204207 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3237.t1.intron1Gchil3237.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1203115..1203888 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3237.t1.stop1Gchil3237.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1204205..1204207 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3237.t1 ID=Gchil3237.t1|Name=Gchil3237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=758bp
MPHLRDALVFISEWRYIPAGHFEVLSRHIHPLTLPVQIPSYSVISPSLCE
SSTRSHHRLNLAAIVAAKSPVIARSNFLVELCLNKLAVTLVFRHDAVKWW
PFVHVHRHIMVSNLRVKVLKKYNNRHVLCTCANSSVYAVPRTTAVPRTTN
KRARPTSPPPSHAAVATSETRAQATVPKLVTYEGHVTDVAANGTITLDEK
LTLHLGPAQPRALVAALRPGATIQVHAAVVYQSPQSIALFPTARCTLSVL
YFGDAHANSANMLHKASCWPLLWMRWPCTLIACAYDVYTALCSKFGRWLA
LTASDLDRCLLGTSNHTGLVQYVMHVHTGVEHVLKVAASKRRDFYSEFFH
PLAASKPDELNCCFVPTLAHVIKGVQGMWKQFLLAQTTMEEAQHQQERLN
GRQYKTRMFGRGDLYDMLLTLGLGTIIGAPHAGRMALVGRLQCQSDRYGG
ALLLSDCTARVHVVCVGDVQACMLEAIISVQQFDIVVNSCATEDMHTLIT
FVFHAHDVKVLVDGPYVDVDTSSAARQQGEEGGGGTWRETASKQLSASNA
CDGDDEVQSVHTRRADAVWACVFVEGARFENGSATIDGRLLAFRRGAGSK
WSALDEDGEGFWRVALRIAGAAFVSVCAATVREGRVYSVRCSGLDDVGDV
RRALLDDGSGVVEARLDAAQREALFEGRRQCLPDGRLWVAVVAHSPRRLH
RGADVRSVRVGARRSTGVWTLCKRGGDDESMGRVRITRVLRVGHELGVRI
GLAELDK*
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spliced messenger RNA

>Gchil3237.t1 ID=Gchil3237.t1|Name=Gchil3237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2274bp|location=Sequence derived from alignment at tig00004382_pilon:1201160..1204207+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCATTTGAGAGATGCGCTTGTGTTCATTTCCGAGTGGCGCTATAT
CCCAGCCGGTCATTTCGAAGTGTTGTCTAGACATATTCATCCGCTCACGC
TGCCTGTGCAAATCCCGTCCTACAGTGTAATCTCTCCGTCGTTATGCGAA
TCATCAACGCGCTCGCACCATCGCCTCAATCTGGCCGCCATCGTCGCCGC
CAAGTCGCCCGTCATTGCGCGCTCCAACTTTCTTGTGGAGCTTTGCTTGA
ACAAGCTCGCAGTAACGCTTGTGTTTCGGCACGACGCTGTCAAATGGTGG
CCGTTCGTCCACGTCCATCGTCATATCATGGTGTCCAACCTTCGAGTCAA
AGTGTTGAAAAAGTACAATAATCGTCATGTGCTATGCACCTGCGCCAACT
CCTCTGTTTACGCTGTACCGCGTACCACCGCTGTGCCGCGTACTACCAAC
AAGCGCGCGCGACCTAcgtcgccgccgccgtcgcacgccgccgtcgccac
ctccgAAACGCGCGCGCAAGCAACAGTGCCCAAACTGGTCACGTACGAGG
GGCACGTCACCGACGTGGCCGCCAACGGCACCATCACGTTGGACGAAAAA
CTCACACTTCACCTTGGACCCGCACAGCCGCGCGCGCTGGTGGCTGCGTT
GCGGCCAGGAGCCACAATACAAGTTCATGCCGCAGTGGTGTATCAATCGC
CCCAGTCCATCGCCCTATTCCCCACCGCGCGCTGCACGCTCTCCGTGTTG
TACTTTGGGGATGCGCACGCAAACAGTGCCAACATGTTGCACAAGGCGAG
CTGTTGGCCGCTGCTGTGGATGCGTTGGCCGTGCACTCTCATTGCGTGCG
CGTACGATGTGTACACGGCACTTTGCTCAAAGTTTGGGCGCTGGTTGGCG
CTCACCGCCTCGGACTTGGATCGCTGTTTGCTGGGCACCAGCAATCACAC
TGGTTTGGTGCAGTACGTTATGCATGTGCACACTGGTGTAGAACATGTTT
TGAAGGTAGCGGCGTCAAAGAGACGTGATTTTTATAGCGAGTTTTTTCAT
CCGCTTGCTGCGTCCAAACCAGATGAGCTCAACTGCTGCTTTGTTCCCAC
GCTTGCGCACGTCATCAAAGGCGTTCAAGGTATGTGGAAACAGTTTTTGT
TGGCGCAAACCACAATGGAAGAGGCGCAGCACCAGCAGGAGCGGCTCAAC
GGCAGGCAGTACAAGACGCGCATGTTTGGAAGAGGTGATCTTTATGACAT
GTTGTTGACACTTGGGCTCGGTACAATCATTGGCGCGCCGCATGCTGGTC
GAATGGCTCTTGTGGGACGCTTGCAATGCCAGAGTGATCGTTACGGTGGC
GCGCTACTTTTGAGCGATTGTACTGCTCGTGTGCATGTGGTGTGCGTGGG
TGACGTGCAGGCGTGCATGCTGGAGGCCATTATCTCTGTACAGCAGTTTG
ACATTGTGGTAAACAGTTGTGCGACGGAAGACATGCACACTCTCATTACA
TTTGTATTTCACGCGCACGACGTCAAGGTGTTGGTGGACGGCCCGTACGT
GGACGTGGATACGAGCAGCGCGGCGCGTCAACAAGGCGAGGAGGGTGGCG
GCGGCACATGGCGCGAAACGGCTTCGAAACAGCTATCAGCGAGCAACGCG
TGCGACGGCGACGACGAGGTGCAGAGTGTGCACACACGGCGCGCGGACGC
GGTGTGGGCGTGCGTGTTTGTAGAGGGGGCGCGCTTCGAAAACGGCAGCG
CGACGATTGACGGACGGCTGCTGGCGTTTCGCAGAGGGGCGGGCAGCAAG
TGGTCGGCGCTGGACGAGGACGGCGAAGGCTTTTGGCGGGTGGCGTTGCG
CATCGCGGGCGCGGCGTTTGTGAGCGTGTGCGCGGCGACGGTACGCGAGG
GCAGAGTGTACTCGGTGCGGTGCTCGGGGCTGGACGACGTGGGGGATGTG
CGACGcgcgcTACTGGATGACGGTAGTGGCGTGGTGGAGGCGCGCTTGGA
CGCGGCACAGCGTGAAGCGCTGTTTGAAGGTCGGCGCCAATGCTTGCCCG
ATGGACGACTTTGGGTGGCCGTGGTGGCTCATTCGCCGCGTCGCTTGCAT
CGCGGCGCGGACGTTCGTAGTGTGCGAGTGGGAGCGCGCCGTTCGACGGG
GGTGTGGACGTTGTGCAAACGTGGGGGCGATGATGAAAGTATGGGGCGCG
TGAGGATTACGCGCGTGCTGCGCGTTGGACATGAATTGGGCGTGCGAATT
GGACTGGCGGAATTGGACAAGTGA
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protein sequence of Gchil3237.t1

>Gchil3237.t1 ID=Gchil3237.t1|Name=Gchil3237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=758bp
MPHLRDALVFISEWRYIPAGHFEVLSRHIHPLTLPVQIPSYSVISPSLCE
SSTRSHHRLNLAAIVAAKSPVIARSNFLVELCLNKLAVTLVFRHDAVKWW
PFVHVHRHIMVSNLRVKVLKKYNNRHVLCTCANSSVYAVPRTTAVPRTTN
KRARPTSPPPSHAAVATSETRAQATVPKLVTYEGHVTDVAANGTITLDEK
LTLHLGPAQPRALVAALRPGATIQVHAAVVYQSPQSIALFPTARCTLSVL
YFGDAHANSANMLHKASCWPLLWMRWPCTLIACAYDVYTALCSKFGRWLA
LTASDLDRCLLGTSNHTGLVQYVMHVHTGVEHVLKVAASKRRDFYSEFFH
PLAASKPDELNCCFVPTLAHVIKGVQGMWKQFLLAQTTMEEAQHQQERLN
GRQYKTRMFGRGDLYDMLLTLGLGTIIGAPHAGRMALVGRLQCQSDRYGG
ALLLSDCTARVHVVCVGDVQACMLEAIISVQQFDIVVNSCATEDMHTLIT
FVFHAHDVKVLVDGPYVDVDTSSAARQQGEEGGGGTWRETASKQLSASNA
CDGDDEVQSVHTRRADAVWACVFVEGARFENGSATIDGRLLAFRRGAGSK
WSALDEDGEGFWRVALRIAGAAFVSVCAATVREGRVYSVRCSGLDDVGDV
RRALLDDGSGVVEARLDAAQREALFEGRRQCLPDGRLWVAVVAHSPRRLH
RGADVRSVRVGARRSTGVWTLCKRGGDDESMGRVRITRVLRVGHELGVRI
GLAELDK*
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mRNA from alignment at tig00004382_pilon:1201160..1204207+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3237.t1 ID=Gchil3237.t1|Name=Gchil3237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=3048bp|location=Sequence derived from alignment at tig00004382_pilon:1201160..1204207+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCATTTGAGAGATGCGCTTGTGTTCATTTCCGAGTGGCGCTATAT CCCAGCCGGTCATTTCGAAGTGTTGTCTAGACATATTCATCCGCTCACGC TGCCTGTGCAAATCCCGTCCTACAGTGTAATCTCTCCGTCGTTATGCGAA TCATCAACGCGCTCGCACCATCGCCTCAATCTGGCCGCCATCGTCGCCGC CAAGTCGCCCGTCATTGCGCGCTCCAACTTTCTTGTGGAGCTTTGCTTGA ACAAGCTCGCAGTAACGCTTGTGTTTCGGCACGACGCTGTCAAATGGTGG CCGTTCGTCCACGTCCATCGTCATATCATGGTGTCCAACCTTCGAGTCAA AGTGTTGAAAAAGTACAATAATCGTCATGTGCTATGCACCTGCGCCAACT CCTCTGTTTACGCTGTACCGCGTACCACCGCTGTGCCGCGTACTACCAAC AAGCGCGCGCGACCTAcgtcgccgccgccgtcgcacgccgccgtcgccac ctccgAAACGCGCGCGCAAGCAACAGTGCCCAAACTGGTCACGTACGAGG GGCACGTCACCGACGTGGCCGCCAACGGCACCATCACGTTGGACGAAAAA CTCACACTTCACCTTGGACCCGCACAGCCGCGCGCGCTGGTGGCTGCGTT GCGGCCAGGAGCCACAATACAAGTTCATGCCGCAGTGGTGTATCAATCGC CCCAGTCCATCGCCCTATTCCCCACCGCGCGCTGCACGCTCTCCGTGTTG TACTTTGGGGATGCGCACGCAAACAGTGCCAACATGTTGCACAAGGCGAG CTGTTGGCCGCTGCTGTGGATGCGTTGGCCGTGCACTCTCATTGCGTGCG CGTACGATGTGTACACGGCACTTTGCTCAAAGTTTGGGCGCTGGTTGGCG CTCACCGCCTCGGACTTGGATCGCTGTTTGCTGGGCACCAGCAATCACAC TGGTTTGGTGCAGTACGTTATGCATGTGCACACTGGTGTAGAACATGTTT TGAAGGTAGCGGCGTCAAAGAGACGTGATTTTTATAGCGAGTTTTTTCAT CCGCTTGCTGCGTCCAAACCAGATGAGCTCAACTGCTGCTTTGTTCCCAC GCTTGCGCACGTCATCAAAGGCGTTCAAGGTATGTGGAAACAGTTTTTGT TGGCGCAAACCACAATGGAAGAGGCGCAGCACCAGCAGGAGCGGCTCAAC GGCAGGCAGTACAAGACGCGCATGTTTGGAAGAGGTGATCTTTATGACAT GTTGTTGACACTTGGGCTCGGTACAATCATTGGCGCGCCGCATGCTGGTC GAATGGCTCTTGTGGGACGCTTGCAATGCCAGAGTGATCGTTACGGTGGC GCGCTACTTTTGAGCGATTGTACTGCTCGTGTGCATGTGGTGTGCGTGGG TGACGTGCAGGCGTGCATGCTGGAGGCCATTATCTCTGTACAGCAGTTTG ACATTGTGGTAAACAGTTGTGCGACGGAAGACATGCACACTCTCATTACA TTTGTATTTCACGCGCACGACGTCAAGGTGTTGGTGGACGGCCCGTACGT GGACGTGGATACGAGCAGCGCGGCGCGTCAACAAGGCGAGGAGGGTGGCG GCGGCACATGGCGCGAAACGGCTTCGAAACAGCTATCAGCGAGCAACGCG TGCGACGGCGACGACGAGGTGCAGAGTGTGCACACACGGCGCGCGGACGC GGTGTGGGCGTGCGTGTTTGTAGAGGGGGCGCGCTTCGAAAACGGCAGCG CGACGATTGACGGACGGCTGCTGGCGTTTCGCAGAGGGGCGGGCAGCAAG TGGTCGGCGCTGGACGAGGACGGCGAAGGCTTTTGGCGGGTGGCGTTGCG CATCGCGGGCGCGGCGTTTGTGAGCGTGTGCGCGGCGACGGTACGCGAGG GCAGAGTGTACTCGGTGCGGTGCTCGGGGCTGGACGACGTGGGGGATGTG CGACGGTTCGTGGggtcgggcgggcgggcggcggtggggcgggggggcgg ggcgctgcggctgcggagcgtggcggaggggggcgcattggtggagcgcg tggaggcggagcagttggaggggctggaggggctggagggggggagggcg cggtacgtgacacgggcggtgggatggtttgaggagcgcgcgcggggggg ggttgggagcgagttgtggaaggtgtatgggatggggatggaaggggggg acgaggaggaggtgagcgtggtggcgacggtggcggagctgtgggggtgc gaggaggacggcgtgtggtgggtggtggcgcgattggtagactgcgagct gggcgtgttcgacgtgcagctgtgggtgcacggagggacgcgcgcagcgg cggcggcacgcgcgctggccgaaggcatgacggtggaggtacgagcgacg cgcgtggtgcgcggcgtcgagggggaggtacgactagtggccacgtcagc atCGCGCATGGAAATTTACACCGTGGCACGTGTGGGGCGCGTGGCGCACA CACACGCTGAGCACGTGGCGCACGAGTGGCAACCACGACAAGGGCCACAG CAAAATGACGGCGACGTGTTGCGCGCAACGCTGCGACGCGTGGGACGCGT GTGGACGACGCAGCTTGGCGACGGCGCACTGGCGCAGCAAGTGCAGCGGC GCGGGTGGTGTGGAATTGTAcgcgtgtggcacgcgcgcgtgacgcgcgcg tggcacgagcgtggacgagcgtgcgccagcgcgcTACTGGATGACGGTAG TGGCGTGGTGGAGGCGCGCTTGGACGCGGCACAGCGTGAAGCGCTGTTTG AAGGTCGGCGCCAATGCTTGCCCGATGGACGACTTTGGGTGGCCGTGGTG GCTCATTCGCCGCGTCGCTTGCATCGCGGCGCGGACGTTCGTAGTGTGCG AGTGGGAGCGCGCCGTTCGACGGGGGTGTGGACGTTGTGCAAACGTGGGG GCGATGATGAAAGTATGGGGCGCGTGAGGATTACGCGCGTGCTGCGCGTT GGACATGAATTGGGCGTGCGAATTGGACTGGCGGAATTGGACAAGTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1201160..1204207+

>Gchil3237.t1 ID=Gchil3237.t1|Name=Gchil3237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2274bp|location=Sequence derived from alignment at tig00004382_pilon:1201160..1204207+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCATTTGAGAGATGCGCTTGTGTTCATTTCCGAGTGGCGCTATAT
CCCAGCCGGTCATTTCGAAGTGTTGTCTAGACATATTCATCCGCTCACGC
TGCCTGTGCAAATCCCGTCCTACAGTGTAATCTCTCCGTCGTTATGCGAA
TCATCAACGCGCTCGCACCATCGCCTCAATCTGGCCGCCATCGTCGCCGC
CAAGTCGCCCGTCATTGCGCGCTCCAACTTTCTTGTGGAGCTTTGCTTGA
ACAAGCTCGCAGTAACGCTTGTGTTTCGGCACGACGCTGTCAAATGGTGG
CCGTTCGTCCACGTCCATCGTCATATCATGGTGTCCAACCTTCGAGTCAA
AGTGTTGAAAAAGTACAATAATCGTCATGTGCTATGCACCTGCGCCAACT
CCTCTGTTTACGCTGTACCGCGTACCACCGCTGTGCCGCGTACTACCAAC
AAGCGCGCGCGACCTAcgtcgccgccgccgtcgcacgccgccgtcgccac
ctccgAAACGCGCGCGCAAGCAACAGTGCCCAAACTGGTCACGTACGAGG
GGCACGTCACCGACGTGGCCGCCAACGGCACCATCACGTTGGACGAAAAA
CTCACACTTCACCTTGGACCCGCACAGCCGCGCGCGCTGGTGGCTGCGTT
GCGGCCAGGAGCCACAATACAAGTTCATGCCGCAGTGGTGTATCAATCGC
CCCAGTCCATCGCCCTATTCCCCACCGCGCGCTGCACGCTCTCCGTGTTG
TACTTTGGGGATGCGCACGCAAACAGTGCCAACATGTTGCACAAGGCGAG
CTGTTGGCCGCTGCTGTGGATGCGTTGGCCGTGCACTCTCATTGCGTGCG
CGTACGATGTGTACACGGCACTTTGCTCAAAGTTTGGGCGCTGGTTGGCG
CTCACCGCCTCGGACTTGGATCGCTGTTTGCTGGGCACCAGCAATCACAC
TGGTTTGGTGCAGTACGTTATGCATGTGCACACTGGTGTAGAACATGTTT
TGAAGGTAGCGGCGTCAAAGAGACGTGATTTTTATAGCGAGTTTTTTCAT
CCGCTTGCTGCGTCCAAACCAGATGAGCTCAACTGCTGCTTTGTTCCCAC
GCTTGCGCACGTCATCAAAGGCGTTCAAGGTATGTGGAAACAGTTTTTGT
TGGCGCAAACCACAATGGAAGAGGCGCAGCACCAGCAGGAGCGGCTCAAC
GGCAGGCAGTACAAGACGCGCATGTTTGGAAGAGGTGATCTTTATGACAT
GTTGTTGACACTTGGGCTCGGTACAATCATTGGCGCGCCGCATGCTGGTC
GAATGGCTCTTGTGGGACGCTTGCAATGCCAGAGTGATCGTTACGGTGGC
GCGCTACTTTTGAGCGATTGTACTGCTCGTGTGCATGTGGTGTGCGTGGG
TGACGTGCAGGCGTGCATGCTGGAGGCCATTATCTCTGTACAGCAGTTTG
ACATTGTGGTAAACAGTTGTGCGACGGAAGACATGCACACTCTCATTACA
TTTGTATTTCACGCGCACGACGTCAAGGTGTTGGTGGACGGCCCGTACGT
GGACGTGGATACGAGCAGCGCGGCGCGTCAACAAGGCGAGGAGGGTGGCG
GCGGCACATGGCGCGAAACGGCTTCGAAACAGCTATCAGCGAGCAACGCG
TGCGACGGCGACGACGAGGTGCAGAGTGTGCACACACGGCGCGCGGACGC
GGTGTGGGCGTGCGTGTTTGTAGAGGGGGCGCGCTTCGAAAACGGCAGCG
CGACGATTGACGGACGGCTGCTGGCGTTTCGCAGAGGGGCGGGCAGCAAG
TGGTCGGCGCTGGACGAGGACGGCGAAGGCTTTTGGCGGGTGGCGTTGCG
CATCGCGGGCGCGGCGTTTGTGAGCGTGTGCGCGGCGACGGTACGCGAGG
GCAGAGTGTACTCGGTGCGGTGCTCGGGGCTGGACGACGTGGGGGATGTG
CGACGcgcgcTACTGGATGACGGTAGTGGCGTGGTGGAGGCGCGCTTGGA
CGCGGCACAGCGTGAAGCGCTGTTTGAAGGTCGGCGCCAATGCTTGCCCG
ATGGACGACTTTGGGTGGCCGTGGTGGCTCATTCGCCGCGTCGCTTGCAT
CGCGGCGCGGACGTTCGTAGTGTGCGAGTGGGAGCGCGCCGTTCGACGGG
GGTGTGGACGTTGTGCAAACGTGGGGGCGATGATGAAAGTATGGGGCGCG
TGAGGATTACGCGCGTGCTGCGCGTTGGACATGAATTGGGCGTGCGAATT
GGACTGGCGGAATTGGACAAGTGA
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