Gchil3234.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3234.t1
Unique Name	Gchil3234.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1194090..1196009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_02487T0
Preferred name	cyp8
PFAMs	Pro_isomerase,Rtf2,U-box
Max annot lvl	4751\|Fungi
KEGG ko	ko:K10598
KEGG Pathway	ko04120,map04120
GOs	GO:0000209,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0019787,GO:0032446,GO:0034450,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Evalue	7.46e-65
EggNOG OGs	COG0652@1\|root,KOG0883@2759\|Eukaryota,38E53@33154\|Opisthokonta,3NUAM@4751\|Fungi
EC	5.2.1.8
Description	Peptidyl-prolyl cis-trans
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03041,ko03110,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3234	Gchil3234	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1194090..1196009 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3234.t1.stop1	Gchil3234.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1194090..1194092 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3234.t1.CDS1	Gchil3234.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1194090..1196009 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3234.t1.exon1	Gchil3234.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1194090..1196009 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3234.t1.start1	Gchil3234.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1196007..1196009 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3234.t1	Gchil3234.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1194090..1196009 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1194090..1196009-
coding sequence from alignment at tig00004382_pilon:1194090..1196009-

mRNA sequence

>Gchil3234.t1 ID=Gchil3234.t1|Name=Gchil3234.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=640bp
MEGAHVVTKRKEQRAALHLCSISLTPHSNPVASRDGMVFECAAITQLSSR
TGLNPITGRPLSPHQLIPLTFTHDLLTRRYCCPVLRKIFDGTIKVVVIAT
TGRVYSYAAVQKLNLHPRTMRDLVDNTPFTMNDIIVLYDPEQHVWLASDL
NVPHQALSHVTCPPRSANTLPSPPFITRHSLSPNASTPSLPSLSAQGIVP
PIEFKSLPPHPASSAHEPVPGTRKPLRALADSTPIPMRLSPPSSLFNTHQ
HTRVPSTGLHPPAVHPVHSQVSQTYHRPLESMRRPDPCAADVTITDMNME
AKPSFRPPEASRGPQNNLKRMARRSTHKSPLAKKPRFGAQPSSAQRAVQQ
PVDPQISMARFYHRKKEEEERKLVYKKIRKGKKGKGYVRVVTNIGHLNIE
LHCDRVPTTCDNFLTLSERRYYDGLTWHRVVPGFIAQTGDPTGKGDGGES
AWGGYVKDEIRANLSHDAPGIVSMANSGRDTNRSQWFICFDAASHLDGTH
TVFGKVVGGLYVLQKMESEAEMGHPLTVERIEVLVNPIRQARVQLEKSKV
QSVPGLSITESPRPQCSQGSIVSTIPSSLKQENKPKFMPLKPEPSSSFRS
LIDKPNLPQSPRISHLPSIRNLMNAASFSPGGDRRPPTP*

spliced messenger RNA

>Gchil3234.t1 ID=Gchil3234.t1|Name=Gchil3234.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00004382_pilon:1194090..1196009- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGAGCACATGTCGTGACAAAGAGGAAGGAGCAGCGCGCTGCTCT
GCATCTGTGCTCCATCTCGCTGACGCCGCATTCAAACCCCGTGGCGTCGC
GCGATGGCATGGTGTTCGAATGCGCTGCCATCACGCAGCTAAGCAGTCGA
ACAGGGCTTAATCCGATAACCGGTCGTCCTCTTTCTCCGCACCAACTCAT
CCCACTCACCTTCACACATGACCTGCTCACGCGTCGTTACTGCTGCCCAG
TTCTGCGTAAGATATTCGATGGCACTATCAAGGTCGTCGTCATTGCCACC
ACAGGGCGTGTCTACTCGTATGCCGCCGTACAAAAGCTTAATTTGCATCC
GCGCACTATGCGCGATCTCGTGGATAATACGCCGTTCACCATGAACGATA
TCATAGTCCTGTATGATCCTGAGCAGCACGTTTGGCTTGCAAGTGATCTC
AATGTGCCTCACCAAGCTCTATCGCATGTTACCTGTCCCCCACGGTCCGC
AAACACTTTGCCTTCACCGCCTTTCATAACCCGGCACAGCCTTTCGCCCA
ATGCCTCTACTCCATCTTTGCCTTCGCTCTCTGCGCAGGGCATTGTGCCT
CCAATAGAATTCAAGTCTCTTCCGCCTCATCCGGCCAGTTCCGCCCACGA
ACCTGTTCCAGGTACTCGTAAGCCTCTCCGGGCCCTAGCTGACTCCACTC
CCATTCCCATGCGCCTTTCCCCGCCTTCCTCCTTGTTTAACACTCACCAA
CATACCCGCGTACCATCCACTGGGCTGCATCCCCCCGCGGTTCACCCAGT
ACATAGCCAGGTTTCTCAAACATACCACCGCCCGCTTGAAAGTATGCGCC
GGCCTGACCCATGTGCAGCTGATGTAACGATCACGGACATGAATATGGAA
GCTAAGCCCTCATTTCGACCTCCGGAAGCATCAAGGGGTCCGCAGAACAA
CCTGAAGCGCATGGCGAGACGGTCAACTCACAAGTCTCCACTTGCCAAAA
AACCTCGTTTTGGGGCGCAGCCCTCTTCTGCTCAACGAGCGGTACAGCAG
CCTGTGGACCCGCAAATATCAATGGCCCGATTTTATCACCGGAAAAAGGA
AGAGGAGGAGAGAAAGCTAGTGTACAAGAAAATTAGAAAGGGTAAGAAGG
GAAAAGGTTACGTTCGAGTAGTAACTAATATCGGCCATCTGAATATTGAA
CTTCACTGTGACAGAGTGCCCACTACTTGTGACAATTTCCTGACACTATC
TGAAAGGAGATATTACGATGGTTTAACCTGGCATCGAGTGGTTCCCGGGT
TTATTGCTCAAACGGGGGATCCAACCGGAAAGGGTGACGGTGGCGAAAGC
GCTTGGGGCGGCTACGTAAAGGATGAGATTCGAGCCAATTTGAGCCATGA
TGCCCCTGGAATTGTTTCAATGGCCAATTCAGGGAGAGATACAAACAGAA
GTCAATGGTTTATCTGCTTTGATGCAGCATCACACTTAGATGGTACGCAT
ACTGTCTTCGGTAAAGTTGTTGGAGGCCTCTATGTTCTGCAAAAGATGGA
GAGTGAAGCAGAAATGGGGCATCCACTCACTGTGGAGAGAATAGAAGTAC
TGGTTAATCCAATTCGCCAAGCCAGGGTTCAATTAGAGAAGTCGAAGGTA
CAGTCGGTTCCCGGGTTGAGCATTACTGAGTCTCCACGACCGCAGTGTTC
TCAGGGGAGCATAGTATCGACCATCCCATCGTCCCTCAAGCAAGAGAACA
AGCCGAAATTCATGCCTCTGAAGCCCGAGCCCTCGAGCAGCTTTCGCTCA
CTGATCGACAAGCCTAACTTGCCTCAATCTCCACGGATTTCTCACCTCCC
TTCGATTCGCAATTTGATGAATGCAGCTTCTTTCTCTCCTGGAGGTGATC
GACGGCCTCCTACCCCGTAA

protein sequence of Gchil3234.t1

>Gchil3234.t1 ID=Gchil3234.t1|Name=Gchil3234.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=640bp
MEGAHVVTKRKEQRAALHLCSISLTPHSNPVASRDGMVFECAAITQLSSR
TGLNPITGRPLSPHQLIPLTFTHDLLTRRYCCPVLRKIFDGTIKVVVIAT
TGRVYSYAAVQKLNLHPRTMRDLVDNTPFTMNDIIVLYDPEQHVWLASDL
NVPHQALSHVTCPPRSANTLPSPPFITRHSLSPNASTPSLPSLSAQGIVP
PIEFKSLPPHPASSAHEPVPGTRKPLRALADSTPIPMRLSPPSSLFNTHQ
HTRVPSTGLHPPAVHPVHSQVSQTYHRPLESMRRPDPCAADVTITDMNME
AKPSFRPPEASRGPQNNLKRMARRSTHKSPLAKKPRFGAQPSSAQRAVQQ
PVDPQISMARFYHRKKEEEERKLVYKKIRKGKKGKGYVRVVTNIGHLNIE
LHCDRVPTTCDNFLTLSERRYYDGLTWHRVVPGFIAQTGDPTGKGDGGES
AWGGYVKDEIRANLSHDAPGIVSMANSGRDTNRSQWFICFDAASHLDGTH
TVFGKVVGGLYVLQKMESEAEMGHPLTVERIEVLVNPIRQARVQLEKSKV
QSVPGLSITESPRPQCSQGSIVSTIPSSLKQENKPKFMPLKPEPSSSFRS
LIDKPNLPQSPRISHLPSIRNLMNAASFSPGGDRRPPTP*

mRNA from alignment at tig00004382_pilon:1194090..1196009-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3234.t1 ID=Gchil3234.t1|Name=Gchil3234.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00004382_pilon:1194090..1196009- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGAGCACATGTCGTGACAAAGAGGAAGGAGCAGCGCGCTGCTCT
GCATCTGTGCTCCATCTCGCTGACGCCGCATTCAAACCCCGTGGCGTCGC
GCGATGGCATGGTGTTCGAATGCGCTGCCATCACGCAGCTAAGCAGTCGA
ACAGGGCTTAATCCGATAACCGGTCGTCCTCTTTCTCCGCACCAACTCAT
CCCACTCACCTTCACACATGACCTGCTCACGCGTCGTTACTGCTGCCCAG
TTCTGCGTAAGATATTCGATGGCACTATCAAGGTCGTCGTCATTGCCACC
ACAGGGCGTGTCTACTCGTATGCCGCCGTACAAAAGCTTAATTTGCATCC
GCGCACTATGCGCGATCTCGTGGATAATACGCCGTTCACCATGAACGATA
TCATAGTCCTGTATGATCCTGAGCAGCACGTTTGGCTTGCAAGTGATCTC
AATGTGCCTCACCAAGCTCTATCGCATGTTACCTGTCCCCCACGGTCCGC
AAACACTTTGCCTTCACCGCCTTTCATAACCCGGCACAGCCTTTCGCCCA
ATGCCTCTACTCCATCTTTGCCTTCGCTCTCTGCGCAGGGCATTGTGCCT
CCAATAGAATTCAAGTCTCTTCCGCCTCATCCGGCCAGTTCCGCCCACGA
ACCTGTTCCAGGTACTCGTAAGCCTCTCCGGGCCCTAGCTGACTCCACTC
CCATTCCCATGCGCCTTTCCCCGCCTTCCTCCTTGTTTAACACTCACCAA
CATACCCGCGTACCATCCACTGGGCTGCATCCCCCCGCGGTTCACCCAGT
ACATAGCCAGGTTTCTCAAACATACCACCGCCCGCTTGAAAGTATGCGCC
GGCCTGACCCATGTGCAGCTGATGTAACGATCACGGACATGAATATGGAA
GCTAAGCCCTCATTTCGACCTCCGGAAGCATCAAGGGGTCCGCAGAACAA
CCTGAAGCGCATGGCGAGACGGTCAACTCACAAGTCTCCACTTGCCAAAA
AACCTCGTTTTGGGGCGCAGCCCTCTTCTGCTCAACGAGCGGTACAGCAG
CCTGTGGACCCGCAAATATCAATGGCCCGATTTTATCACCGGAAAAAGGA
AGAGGAGGAGAGAAAGCTAGTGTACAAGAAAATTAGAAAGGGTAAGAAGG
GAAAAGGTTACGTTCGAGTAGTAACTAATATCGGCCATCTGAATATTGAA
CTTCACTGTGACAGAGTGCCCACTACTTGTGACAATTTCCTGACACTATC
TGAAAGGAGATATTACGATGGTTTAACCTGGCATCGAGTGGTTCCCGGGT
TTATTGCTCAAACGGGGGATCCAACCGGAAAGGGTGACGGTGGCGAAAGC
GCTTGGGGCGGCTACGTAAAGGATGAGATTCGAGCCAATTTGAGCCATGA
TGCCCCTGGAATTGTTTCAATGGCCAATTCAGGGAGAGATACAAACAGAA
GTCAATGGTTTATCTGCTTTGATGCAGCATCACACTTAGATGGTACGCAT
ACTGTCTTCGGTAAAGTTGTTGGAGGCCTCTATGTTCTGCAAAAGATGGA
GAGTGAAGCAGAAATGGGGCATCCACTCACTGTGGAGAGAATAGAAGTAC
TGGTTAATCCAATTCGCCAAGCCAGGGTTCAATTAGAGAAGTCGAAGGTA
CAGTCGGTTCCCGGGTTGAGCATTACTGAGTCTCCACGACCGCAGTGTTC
TCAGGGGAGCATAGTATCGACCATCCCATCGTCCCTCAAGCAAGAGAACA
AGCCGAAATTCATGCCTCTGAAGCCCGAGCCCTCGAGCAGCTTTCGCTCA
CTGATCGACAAGCCTAACTTGCCTCAATCTCCACGGATTTCTCACCTCCC
TTCGATTCGCAATTTGATGAATGCAGCTTCTTTCTCTCCTGGAGGTGATC
GACGGCCTCCTACCCCGTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:1194090..1196009-

>Gchil3234.t1 ID=Gchil3234.t1|Name=Gchil3234.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1920bp|location=Sequence derived from alignment at tig00004382_pilon:1194090..1196009- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGAGCACATGTCGTGACAAAGAGGAAGGAGCAGCGCGCTGCTCT
GCATCTGTGCTCCATCTCGCTGACGCCGCATTCAAACCCCGTGGCGTCGC
GCGATGGCATGGTGTTCGAATGCGCTGCCATCACGCAGCTAAGCAGTCGA
ACAGGGCTTAATCCGATAACCGGTCGTCCTCTTTCTCCGCACCAACTCAT
CCCACTCACCTTCACACATGACCTGCTCACGCGTCGTTACTGCTGCCCAG
TTCTGCGTAAGATATTCGATGGCACTATCAAGGTCGTCGTCATTGCCACC
ACAGGGCGTGTCTACTCGTATGCCGCCGTACAAAAGCTTAATTTGCATCC
GCGCACTATGCGCGATCTCGTGGATAATACGCCGTTCACCATGAACGATA
TCATAGTCCTGTATGATCCTGAGCAGCACGTTTGGCTTGCAAGTGATCTC
AATGTGCCTCACCAAGCTCTATCGCATGTTACCTGTCCCCCACGGTCCGC
AAACACTTTGCCTTCACCGCCTTTCATAACCCGGCACAGCCTTTCGCCCA
ATGCCTCTACTCCATCTTTGCCTTCGCTCTCTGCGCAGGGCATTGTGCCT
CCAATAGAATTCAAGTCTCTTCCGCCTCATCCGGCCAGTTCCGCCCACGA
ACCTGTTCCAGGTACTCGTAAGCCTCTCCGGGCCCTAGCTGACTCCACTC
CCATTCCCATGCGCCTTTCCCCGCCTTCCTCCTTGTTTAACACTCACCAA
CATACCCGCGTACCATCCACTGGGCTGCATCCCCCCGCGGTTCACCCAGT
ACATAGCCAGGTTTCTCAAACATACCACCGCCCGCTTGAAAGTATGCGCC
GGCCTGACCCATGTGCAGCTGATGTAACGATCACGGACATGAATATGGAA
GCTAAGCCCTCATTTCGACCTCCGGAAGCATCAAGGGGTCCGCAGAACAA
CCTGAAGCGCATGGCGAGACGGTCAACTCACAAGTCTCCACTTGCCAAAA
AACCTCGTTTTGGGGCGCAGCCCTCTTCTGCTCAACGAGCGGTACAGCAG
CCTGTGGACCCGCAAATATCAATGGCCCGATTTTATCACCGGAAAAAGGA
AGAGGAGGAGAGAAAGCTAGTGTACAAGAAAATTAGAAAGGGTAAGAAGG
GAAAAGGTTACGTTCGAGTAGTAACTAATATCGGCCATCTGAATATTGAA
CTTCACTGTGACAGAGTGCCCACTACTTGTGACAATTTCCTGACACTATC
TGAAAGGAGATATTACGATGGTTTAACCTGGCATCGAGTGGTTCCCGGGT
TTATTGCTCAAACGGGGGATCCAACCGGAAAGGGTGACGGTGGCGAAAGC
GCTTGGGGCGGCTACGTAAAGGATGAGATTCGAGCCAATTTGAGCCATGA
TGCCCCTGGAATTGTTTCAATGGCCAATTCAGGGAGAGATACAAACAGAA
GTCAATGGTTTATCTGCTTTGATGCAGCATCACACTTAGATGGTACGCAT
ACTGTCTTCGGTAAAGTTGTTGGAGGCCTCTATGTTCTGCAAAAGATGGA
GAGTGAAGCAGAAATGGGGCATCCACTCACTGTGGAGAGAATAGAAGTAC
TGGTTAATCCAATTCGCCAAGCCAGGGTTCAATTAGAGAAGTCGAAGGTA
CAGTCGGTTCCCGGGTTGAGCATTACTGAGTCTCCACGACCGCAGTGTTC
TCAGGGGAGCATAGTATCGACCATCCCATCGTCCCTCAAGCAAGAGAACA
AGCCGAAATTCATGCCTCTGAAGCCCGAGCCCTCGAGCAGCTTTCGCTCA
CTGATCGACAAGCCTAACTTGCCTCAATCTCCACGGATTTCTCACCTCCC
TTCGATTCGCAATTTGATGAATGCAGCTTCTTTCTCTCCTGGAGGTGATC
GACGGCCTCCTACCCCGTAA