Gchil3230.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3230.t1
Unique Name	Gchil3230.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	404

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1183426..1184637 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9823.ENSSSCP00000006664
Preferred name	TGS1
PFAMs	Methyltransf_15
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10408,ko:K14292
KEGG Pathway	ko03013,ko05016,map03013,map05016
GOs	GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008380,GO:0009451,GO:0009452,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016740,GO:0016741,GO:0019216,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034622,GO:0034641,GO:0036260,GO:0036261,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0065003,GO:0065007,GO:0070013,GO:0071164,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0120114,GO:0140098,GO:1901360,GO:1990904
Evalue	6e-53
EggNOG OGs	KOG2730@1\|root,KOG2730@2759\|Eukaryota,38HT8@33154\|Opisthokonta,3B9P9@33208\|Metazoa,3CWBV@33213\|Bilateria,4804U@7711\|Chordata,48Z8S@7742\|Vertebrata,3JCZ7@40674\|Mammalia,4J1YD@91561\|Cetartiodactyla
Description	trimethylguanosine synthase
COG category	S
BRITE	ko00000,ko00001,ko01000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3230	Gchil3230	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1183426..1184637 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3230.t1.start1	Gchil3230.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1183426..1183428 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3230.t1.CDS1	Gchil3230.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1183426..1184637 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3230.t1.exon1	Gchil3230.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1183426..1184637 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3230.t1.stop1	Gchil3230.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1184635..1184637 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3230.t1	Gchil3230.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1183426..1184637 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1183426..1184637+
coding sequence from alignment at tig00004382_pilon:1183426..1184637+

mRNA sequence

>Gchil3230.t1 ID=Gchil3230.t1|Name=Gchil3230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=404bp
MSDVQARLDLRTSATAVEIGPNKGLCADENHVETAQHDPNGTSNQDRGTH
DDEGNRPFLAESIVEDEQPTGKSVTRLRTGGLLSEEARKEARFELQSTQE
LENANNYMAVASLSALGKQKPPTVDAKLFDEKTADLVHIETTPFKISNIT
KRISNAGSKASRIARKVSQRLNVGVMHIKKNIQAPKRLEKYYFQRYRLFH
RFDEGVIMDDESWYSVTPEKIARHIAGRFAGRQLVVDLYSGAGGNSIQFA
LNGAYVIAVEISQSRIDIARNNARVYGVEEYIEFVAADVMDALKMMKERN
MVADGIFLSPPWGGPGYQESESYDVGVFKAVVDLARMVSKDVSVLVPRNV
CGDNVLKWFGPCELEWNYLGNKVKTVTIYFGDLIRCADGISERRGEEDIW
AMT*

spliced messenger RNA

>Gchil3230.t1 ID=Gchil3230.t1|Name=Gchil3230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00004382_pilon:1183426..1184637+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATGTGCAGGCAAGATTGGACCTTCGAACCTCCGCAACAGCAGT
AGAAATCGGTCCCAATAAAGGTTTGTGTGCCGACGAGAATCATGTTGAAA
CCGCGCAACATGACCCAAATGGAACGAGTAATCAAGACAGGGGAACGCAT
GATGACGAAGGAAACCGACCATTTCTTGCCGAATCGATTGTCGAAGATGA
ACAACCTACTGGAAAGAGTGTCACTCGTTTACGTACAGGGGGTCTTCTGA
GTGAGGAAGCCCGTAAGGAAGCTCGATTCGAATTGCAAAGCACTCAAGAG
CTAGAGAATGCTAACAATTATATGGCTGTAGCCAGTTTGAGTGCACTTGG
TAAACAGAAACCCCCGACAGTTGATGCGAAATTGTTTGATGAAAAAACTG
CTGACTTAGTTCACATCGAGACAACCCCATTCAAGATTTCAAACATCACC
AAACGCATCTCAAACGCAGGGTCAAAGGCGTCGCGCATTGCGAGAAAAGT
ATCTCAGCGACTAAACGTCGGTGTGATGCATATCAAAAAGAATATTCAGG
CTCCGAAGAGGCTCGAGAAATACTACTTTCAACGCTATCGTCTGTTTCAT
CGTTTCGATGAAGGGGTGATCATGGATGATGAGAGCTGGTACTCTGTAAC
GCCCGAGAAAATCGCACGGCATATTGCAGGACGATTTGCTGGACGACAGT
TAGTTGTGGATTTGTACAGCGGGGCGGGAGGAAATTCGATTCAGTTCGCA
TTGAACGGAGCATATGTGATCGCTGTGGAAATCTCGCAGAGTCGTATTGA
TATTGCTCGAAACAATGCTCGAGTATATGGAGTAGAAGAATATATCGAGT
TTGTGGCTGCGGACGTGATGGATGCACTGAAAATGATGAAGGAACGAAAT
ATGGTAGCGGATGGTATTTTTCTATCTCCTCCGTGGGGCGGTCCTGGATA
TCAAGAGAGCGAAAGTTATGACGTCGGTGTTTTTAAGGCTGTTGTTGATC
TTGCACGAATGGTTTCGAAGGATGTGAGTGTGTTGGTACCGAGAAATGTG
TGCGGGGACAATGTGCTCAAGTGGTTCGGACCGTGTGAGTTGGAATGGAA
CTACTTGGGGAATAAGGTGAAAACGGTGACGATCTACTTTGGAGATCTGA
TTCGCTGCGCCGACGGCATTTCAGAAAGACGCGGCGAAGAGGACATTTGG
GCGATGACGTAG

protein sequence of Gchil3230.t1

>Gchil3230.t1 ID=Gchil3230.t1|Name=Gchil3230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=404bp
MSDVQARLDLRTSATAVEIGPNKGLCADENHVETAQHDPNGTSNQDRGTH
DDEGNRPFLAESIVEDEQPTGKSVTRLRTGGLLSEEARKEARFELQSTQE
LENANNYMAVASLSALGKQKPPTVDAKLFDEKTADLVHIETTPFKISNIT
KRISNAGSKASRIARKVSQRLNVGVMHIKKNIQAPKRLEKYYFQRYRLFH
RFDEGVIMDDESWYSVTPEKIARHIAGRFAGRQLVVDLYSGAGGNSIQFA
LNGAYVIAVEISQSRIDIARNNARVYGVEEYIEFVAADVMDALKMMKERN
MVADGIFLSPPWGGPGYQESESYDVGVFKAVVDLARMVSKDVSVLVPRNV
CGDNVLKWFGPCELEWNYLGNKVKTVTIYFGDLIRCADGISERRGEEDIW
AMT*

mRNA from alignment at tig00004382_pilon:1183426..1184637+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3230.t1 ID=Gchil3230.t1|Name=Gchil3230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00004382_pilon:1183426..1184637+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGATGTGCAGGCAAGATTGGACCTTCGAACCTCCGCAACAGCAGT
AGAAATCGGTCCCAATAAAGGTTTGTGTGCCGACGAGAATCATGTTGAAA
CCGCGCAACATGACCCAAATGGAACGAGTAATCAAGACAGGGGAACGCAT
GATGACGAAGGAAACCGACCATTTCTTGCCGAATCGATTGTCGAAGATGA
ACAACCTACTGGAAAGAGTGTCACTCGTTTACGTACAGGGGGTCTTCTGA
GTGAGGAAGCCCGTAAGGAAGCTCGATTCGAATTGCAAAGCACTCAAGAG
CTAGAGAATGCTAACAATTATATGGCTGTAGCCAGTTTGAGTGCACTTGG
TAAACAGAAACCCCCGACAGTTGATGCGAAATTGTTTGATGAAAAAACTG
CTGACTTAGTTCACATCGAGACAACCCCATTCAAGATTTCAAACATCACC
AAACGCATCTCAAACGCAGGGTCAAAGGCGTCGCGCATTGCGAGAAAAGT
ATCTCAGCGACTAAACGTCGGTGTGATGCATATCAAAAAGAATATTCAGG
CTCCGAAGAGGCTCGAGAAATACTACTTTCAACGCTATCGTCTGTTTCAT
CGTTTCGATGAAGGGGTGATCATGGATGATGAGAGCTGGTACTCTGTAAC
GCCCGAGAAAATCGCACGGCATATTGCAGGACGATTTGCTGGACGACAGT
TAGTTGTGGATTTGTACAGCGGGGCGGGAGGAAATTCGATTCAGTTCGCA
TTGAACGGAGCATATGTGATCGCTGTGGAAATCTCGCAGAGTCGTATTGA
TATTGCTCGAAACAATGCTCGAGTATATGGAGTAGAAGAATATATCGAGT
TTGTGGCTGCGGACGTGATGGATGCACTGAAAATGATGAAGGAACGAAAT
ATGGTAGCGGATGGTATTTTTCTATCTCCTCCGTGGGGCGGTCCTGGATA
TCAAGAGAGCGAAAGTTATGACGTCGGTGTTTTTAAGGCTGTTGTTGATC
TTGCACGAATGGTTTCGAAGGATGTGAGTGTGTTGGTACCGAGAAATGTG
TGCGGGGACAATGTGCTCAAGTGGTTCGGACCGTGTGAGTTGGAATGGAA
CTACTTGGGGAATAAGGTGAAAACGGTGACGATCTACTTTGGAGATCTGA
TTCGCTGCGCCGACGGCATTTCAGAAAGACGCGGCGAAGAGGACATTTGG
GCGATGACGTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:1183426..1184637+

>Gchil3230.t1 ID=Gchil3230.t1|Name=Gchil3230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00004382_pilon:1183426..1184637+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGATGTGCAGGCAAGATTGGACCTTCGAACCTCCGCAACAGCAGT
AGAAATCGGTCCCAATAAAGGTTTGTGTGCCGACGAGAATCATGTTGAAA
CCGCGCAACATGACCCAAATGGAACGAGTAATCAAGACAGGGGAACGCAT
GATGACGAAGGAAACCGACCATTTCTTGCCGAATCGATTGTCGAAGATGA
ACAACCTACTGGAAAGAGTGTCACTCGTTTACGTACAGGGGGTCTTCTGA
GTGAGGAAGCCCGTAAGGAAGCTCGATTCGAATTGCAAAGCACTCAAGAG
CTAGAGAATGCTAACAATTATATGGCTGTAGCCAGTTTGAGTGCACTTGG
TAAACAGAAACCCCCGACAGTTGATGCGAAATTGTTTGATGAAAAAACTG
CTGACTTAGTTCACATCGAGACAACCCCATTCAAGATTTCAAACATCACC
AAACGCATCTCAAACGCAGGGTCAAAGGCGTCGCGCATTGCGAGAAAAGT
ATCTCAGCGACTAAACGTCGGTGTGATGCATATCAAAAAGAATATTCAGG
CTCCGAAGAGGCTCGAGAAATACTACTTTCAACGCTATCGTCTGTTTCAT
CGTTTCGATGAAGGGGTGATCATGGATGATGAGAGCTGGTACTCTGTAAC
GCCCGAGAAAATCGCACGGCATATTGCAGGACGATTTGCTGGACGACAGT
TAGTTGTGGATTTGTACAGCGGGGCGGGAGGAAATTCGATTCAGTTCGCA
TTGAACGGAGCATATGTGATCGCTGTGGAAATCTCGCAGAGTCGTATTGA
TATTGCTCGAAACAATGCTCGAGTATATGGAGTAGAAGAATATATCGAGT
TTGTGGCTGCGGACGTGATGGATGCACTGAAAATGATGAAGGAACGAAAT
ATGGTAGCGGATGGTATTTTTCTATCTCCTCCGTGGGGCGGTCCTGGATA
TCAAGAGAGCGAAAGTTATGACGTCGGTGTTTTTAAGGCTGTTGTTGATC
TTGCACGAATGGTTTCGAAGGATGTGAGTGTGTTGGTACCGAGAAATGTG
TGCGGGGACAATGTGCTCAAGTGGTTCGGACCGTGTGAGTTGGAATGGAA
CTACTTGGGGAATAAGGTGAAAACGGTGACGATCTACTTTGGAGATCTGA
TTCGCTGCGCCGACGGCATTTCAGAAAGACGCGGCGAAGAGGACATTTGG
GCGATGACGTAG