|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707377.1 |
| PFAMs | Chorein_N,VPS13,VPS13_C,Vps62 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K19526 |
| Evalue | 1.38e-25 |
| EggNOG OGs | COG5043@1|root,KOG1809@2759|Eukaryota |
| Description | regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization |
| COG category | U |
| BRITE | ko00000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=830bp MLQNTLSALLQSVASRYAELSPSDVGIGLRGGRLVVDDVQLRADTFNGPH IPFHVLEGRAGRLRVNVPWSALTDAPVQLYLENVHLIAGPKHSYPDPAAH PSKRSSKRSSASAPHWHQTNVGRLLFNVSVEMYGIKVEYRDPHCVGIISV ASLHAYSAGPEWQRRFASLTSALDPNSPHATAVTMRKLVRLGGVHWVMIP RTNNAAEQPSTDPPQAPPASPRYEHRRMDLQSYESRAPILDGIPISVKVL LHSGTAQIDDQFIPGLHAEIHVDIEDPSVNLTARQIKWIDNIVKAGFGLG AVSNHPPSKSHPARSAVPTPKRRRPQPPSDTKQSSAPTSEGINEDDTDRS EAEGSVGANEELLISSQLEKELAHQLRKSRSNFSENSSRKHEAQYAEQPL QEHDEDSHEEYEEDDLIIVQDPNSSEEHDAPPQRGGLRSFWQAIVSENAD DTVDDAAIVLGLANGHAPDEEDTDTTPEAEDGVEAEHQFAREAVNAAAEA GGLTLQLVLRTPDHQAWQKVKKLEEELEEEKKLRTSLEDAERILRESEQR VQDSETLAQKLRDRNEALVKELQDLEQMTSQAGKNKDAMIRQMEAALVKA EKNLQAMLQAKFKKDANSAITKSIQVNTYQEEVDVKPVFKKQSSTLQEGD AEKQVPKNPEKASGTQKVPSLGSGGSGDDGDPMQKEHVPKILENGEQESK DSLDRRATDVVNEPTERNTKIPPSVSGYKEKDRIADIASHANTATKGKQS DGTNGTILNTSASAPVGGQEQSLTEVQLHNDRYSQLSLDAPSVSITKLIA DMSTKVDVVESSHSKHLEATMSSEGLTLI* back to topspliced messenger RNA >Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004382_pilon:1177145..1179634+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTGCAGAATACCCTCTCCGCGCTGCTGCAGTCCGTCGCCAGTCGTTA CGCAGAGCTCTCTCCGTCTGACGTCGGCATCGGGCTGCGCGGCGGCCGCC TCGTCGTCGACGACGTCCAGCTCCGCGCAGATACCTTCAATGGCCCCCAC ATCCCCTTCCACGTCCTCGAGGGCCGCGCCGGTCGCCTGCGCGTCAACGT CCCGTGGTCCGCCCTCACCGACGCCCCTGTCCAGCTCTACCTCGAGAACG TCCATCTCATCGCCGGTCCCAAGCACAGCTATCCAGACCCCGCCGCCCAC CCCTCCAAGCGCTCTTCTAAACGCTCCTCTGCCTCCGCCCCGCACTGGCA CCAGACAAATGTCGGCCGCCTGCTCTTCAACGTTTCTGTCGAGATGTACG GCATCAAGGTCGAGTACCGCGACCCCCACTGCGTCGGTATCATCTCCGTT GCTTCGCTGCATGCCTACAGCGCCGGTCCCGAATGGCAGCGCCGCTTCGC GTCGCTCACCTCCGCCCTCGATCCGAACAGCCCCCACGCCACTGCAGTCA CCATGCGCAAACTCGTGCGTCTCGGTGGCGTCCACTGGGTCATGATCCCT CGCACCAACAACGCTGCGGAGCAACCCAGCACCGATCCGCCACAAGCACC GCCCGCCTCTCCCAGGTACGAGCACAGGCGCATGGATCTGCAATCCTACG AAAGTCGCGCCCCGATTCTGGATGGCATACCCATCTCGGTCAAAGTGCTA CTGCACAGTGGCACCGCCCAGATTGACGACCAGTTTATCCCGGGATTGCA TGCTGAAATTCATGTAGATATCGAAGACCCCAGCGTTAACCTCACTGCTC GTCAAATCAAATGGATTGACAACATTGTCAAGGCCGGTTTTGGCTTGGGT GCCGTCAGCAACCACCCGCCTTCGAAGTCCCACCCTGCGCGTTCCGCAGT GCCCACTCCCAAACGGCGAAGGCCCCAGCCACCTAGTGATACCAAGCAAT CTTCTGCGCCGACGAGCGAAGGTATTAATGAGGATGACACTGATCGTTCT GAAGCGGAAGGTTCCGTAGGTGCCAATGAAGAGCTCTTAATCAGCTCACA ACTGGAAAAAGAACTTGCGCATCAACTACGAAAATCACGCTCCAACTTTT CGGAAAACTCCTCGAGAAAACATGAAGCTCAGTACGCAGAACAACCCCTG CAGGAACATGATGAGGACAGCCACGAAGAATACGAAGAAGATGATTTAAT TATTGTACAGGACCCCAACTCTTCAGAAGAGCATGATGCACCTCCGCAAA GAGGAGGACTGCGATCATTTTGGCAAGCGATTGTGAGTGAAAATGCTGAT GATACCGTCGACGACGCGGCGATTGTTTTGGGCCTCGCCAATGGACACGC ACCAGACGAAGAAGACACTGACACGACTCCAGAAGCAGAAGACGGTGTTG AGGCTGAACATCAGTTTGCTCGGGAAGCAGTCAACGCGGCCGCAGAAGCT GGCGGTCTGACACTTCAACTCGTCTTGCGCACACCTGACCACCAAGCTTG GCAAAAGGTCAAGAAATTAGAAGAGGAACTTGAAGAAGAGAAAAAACTAA GAACCAGCTTGGAAGACGCAGAAAGGATTTTGCGAGAATCCGAACAGCGT GTGCAGGACTCGGAAACTCTGGCGCAAAAATTGCGAGACAGAAATGAAGC GCTTGTCAAAGAACTTCAAGACCTTGAGCAGATGACTTCTCAAGCTGGGA AGAACAAGGATGCTATGATCCGCCAAATGGAGGCTGCCCTGGTCAAAGCA GAGAAAAATCTTCAGGCCATGTTGCAAGCCAAGTTCAAAAAGGATGCGAA CAGTGCAATCACAAAGTCTATTCAAGTTAACACATATCAGGAAGAGGTAG ATGTGAAACCAGTATTCAAAAAACAATCTAGTACACTTCAGGAAGGGGAT GCCGAAAAACAAGTGCCTAAGAACCCGGAGAAAGCATCTGGTACTCAAAA AGTACCATCCTTGGGTTCTGGGGGGTCCGGCGATGATGGCGACCCAATGC AAAAGGAACATGTTCCGAAAATATTAGAGAACGGTGAACAAGAAAGCAAA GATTCTTTGGATCGGAGAGCGACCGATGTCGTTAACGAGCCTACTGAAAG GAACACCAAGATTCCACCATCGGTATCAGGATACAAAGAAAAAGACCGAA TAGCAGACATTGCGTCGCACGCGAACACAGCGACAAAGGGAAAGCAATCA GACGGTACCAACGGTACTATTCTTAACACGAGCGCTTCCGCTCCAGTCGG TGGTCAAGAGCAAAGTCTCACAGAGGTTCAGTTGCACAATGATAGATATA GTCAACTTTCTCTGGATGCACCATCTGTGTCAATTACAAAACTAATCGCA GACATGAGCACCAAGGTCGATGTTGTTGAATCTTCGCACAGCAAACACCT TGAAGCAACCATGTCTTCAGAAGGTCTAACTCTCATTTAG back to topprotein sequence of Gchil3229.t1 >Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=830bp
MLQNTLSALLQSVASRYAELSPSDVGIGLRGGRLVVDDVQLRADTFNGPH IPFHVLEGRAGRLRVNVPWSALTDAPVQLYLENVHLIAGPKHSYPDPAAH PSKRSSKRSSASAPHWHQTNVGRLLFNVSVEMYGIKVEYRDPHCVGIISV ASLHAYSAGPEWQRRFASLTSALDPNSPHATAVTMRKLVRLGGVHWVMIP RTNNAAEQPSTDPPQAPPASPRYEHRRMDLQSYESRAPILDGIPISVKVL LHSGTAQIDDQFIPGLHAEIHVDIEDPSVNLTARQIKWIDNIVKAGFGLG AVSNHPPSKSHPARSAVPTPKRRRPQPPSDTKQSSAPTSEGINEDDTDRS EAEGSVGANEELLISSQLEKELAHQLRKSRSNFSENSSRKHEAQYAEQPL QEHDEDSHEEYEEDDLIIVQDPNSSEEHDAPPQRGGLRSFWQAIVSENAD DTVDDAAIVLGLANGHAPDEEDTDTTPEAEDGVEAEHQFAREAVNAAAEA GGLTLQLVLRTPDHQAWQKVKKLEEELEEEKKLRTSLEDAERILRESEQR VQDSETLAQKLRDRNEALVKELQDLEQMTSQAGKNKDAMIRQMEAALVKA EKNLQAMLQAKFKKDANSAITKSIQVNTYQEEVDVKPVFKKQSSTLQEGD AEKQVPKNPEKASGTQKVPSLGSGGSGDDGDPMQKEHVPKILENGEQESK DSLDRRATDVVNEPTERNTKIPPSVSGYKEKDRIADIASHANTATKGKQS DGTNGTILNTSASAPVGGQEQSLTEVQLHNDRYSQLSLDAPSVSITKLIA DMSTKVDVVESSHSKHLEATMSSEGLTLI* back to topmRNA from alignment at tig00004382_pilon:1177145..1179634+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004382_pilon:1177145..1179634+ (Gracilaria chilensis NLEC103_M9 male) ATGCTGCAGAATACCCTCTCCGCGCTGCTGCAGTCCGTCGCCAGTCGTTA
CGCAGAGCTCTCTCCGTCTGACGTCGGCATCGGGCTGCGCGGCGGCCGCC
TCGTCGTCGACGACGTCCAGCTCCGCGCAGATACCTTCAATGGCCCCCAC
ATCCCCTTCCACGTCCTCGAGGGCCGCGCCGGTCGCCTGCGCGTCAACGT
CCCGTGGTCCGCCCTCACCGACGCCCCTGTCCAGCTCTACCTCGAGAACG
TCCATCTCATCGCCGGTCCCAAGCACAGCTATCCAGACCCCGCCGCCCAC
CCCTCCAAGCGCTCTTCTAAACGCTCCTCTGCCTCCGCCCCGCACTGGCA
CCAGACAAATGTCGGCCGCCTGCTCTTCAACGTTTCTGTCGAGATGTACG
GCATCAAGGTCGAGTACCGCGACCCCCACTGCGTCGGTATCATCTCCGTT
GCTTCGCTGCATGCCTACAGCGCCGGTCCCGAATGGCAGCGCCGCTTCGC
GTCGCTCACCTCCGCCCTCGATCCGAACAGCCCCCACGCCACTGCAGTCA
CCATGCGCAAACTCGTGCGTCTCGGTGGCGTCCACTGGGTCATGATCCCT
CGCACCAACAACGCTGCGGAGCAACCCAGCACCGATCCGCCACAAGCACC
GCCCGCCTCTCCCAGGTACGAGCACAGGCGCATGGATCTGCAATCCTACG
AAAGTCGCGCCCCGATTCTGGATGGCATACCCATCTCGGTCAAAGTGCTA
CTGCACAGTGGCACCGCCCAGATTGACGACCAGTTTATCCCGGGATTGCA
TGCTGAAATTCATGTAGATATCGAAGACCCCAGCGTTAACCTCACTGCTC
GTCAAATCAAATGGATTGACAACATTGTCAAGGCCGGTTTTGGCTTGGGT
GCCGTCAGCAACCACCCGCCTTCGAAGTCCCACCCTGCGCGTTCCGCAGT
GCCCACTCCCAAACGGCGAAGGCCCCAGCCACCTAGTGATACCAAGCAAT
CTTCTGCGCCGACGAGCGAAGGTATTAATGAGGATGACACTGATCGTTCT
GAAGCGGAAGGTTCCGTAGGTGCCAATGAAGAGCTCTTAATCAGCTCACA
ACTGGAAAAAGAACTTGCGCATCAACTACGAAAATCACGCTCCAACTTTT
CGGAAAACTCCTCGAGAAAACATGAAGCTCAGTACGCAGAACAACCCCTG
CAGGAACATGATGAGGACAGCCACGAAGAATACGAAGAAGATGATTTAAT
TATTGTACAGGACCCCAACTCTTCAGAAGAGCATGATGCACCTCCGCAAA
GAGGAGGACTGCGATCATTTTGGCAAGCGATTGTGAGTGAAAATGCTGAT
GATACCGTCGACGACGCGGCGATTGTTTTGGGCCTCGCCAATGGACACGC
ACCAGACGAAGAAGACACTGACACGACTCCAGAAGCAGAAGACGGTGTTG
AGGCTGAACATCAGTTTGCTCGGGAAGCAGTCAACGCGGCCGCAGAAGCT
GGCGGTCTGACACTTCAACTCGTCTTGCGCACACCTGACCACCAAGCTTG
GCAAAAGGTCAAGAAATTAGAAGAGGAACTTGAAGAAGAGAAAAAACTAA
GAACCAGCTTGGAAGACGCAGAAAGGATTTTGCGAGAATCCGAACAGCGT
GTGCAGGACTCGGAAACTCTGGCGCAAAAATTGCGAGACAGAAATGAAGC
GCTTGTCAAAGAACTTCAAGACCTTGAGCAGATGACTTCTCAAGCTGGGA
AGAACAAGGATGCTATGATCCGCCAAATGGAGGCTGCCCTGGTCAAAGCA
GAGAAAAATCTTCAGGCCATGTTGCAAGCCAAGTTCAAAAAGGATGCGAA
CAGTGCAATCACAAAGTCTATTCAAGTTAACACATATCAGGAAGAGGTAG
ATGTGAAACCAGTATTCAAAAAACAATCTAGTACACTTCAGGAAGGGGAT
GCCGAAAAACAAGTGCCTAAGAACCCGGAGAAAGCATCTGGTACTCAAAA
AGTACCATCCTTGGGTTCTGGGGGGTCCGGCGATGATGGCGACCCAATGC
AAAAGGAACATGTTCCGAAAATATTAGAGAACGGTGAACAAGAAAGCAAA
GATTCTTTGGATCGGAGAGCGACCGATGTCGTTAACGAGCCTACTGAAAG
GAACACCAAGATTCCACCATCGGTATCAGGATACAAAGAAAAAGACCGAA
TAGCAGACATTGCGTCGCACGCGAACACAGCGACAAAGGGAAAGCAATCA
GACGGTACCAACGGTACTATTCTTAACACGAGCGCTTCCGCTCCAGTCGG
TGGTCAAGAGCAAAGTCTCACAGAGGTTCAGTTGCACAATGATAGATATA
GTCAACTTTCTCTGGATGCACCATCTGTGTCAATTACAAAACTAATCGCA
GACATGAGCACCAAGGTCGATGTTGTTGAATCTTCGCACAGCAAACACCT
TGAAGCAACCATGTCTTCAGAAGGTCTAACTCTCATTTAG back to topCoding sequence (CDS) from alignment at tig00004382_pilon:1177145..1179634+ >Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2490bp|location=Sequence derived from alignment at tig00004382_pilon:1177145..1179634+ (Gracilaria chilensis NLEC103_M9 male) ATGCTGCAGAATACCCTCTCCGCGCTGCTGCAGTCCGTCGCCAGTCGTTA CGCAGAGCTCTCTCCGTCTGACGTCGGCATCGGGCTGCGCGGCGGCCGCC TCGTCGTCGACGACGTCCAGCTCCGCGCAGATACCTTCAATGGCCCCCAC ATCCCCTTCCACGTCCTCGAGGGCCGCGCCGGTCGCCTGCGCGTCAACGT CCCGTGGTCCGCCCTCACCGACGCCCCTGTCCAGCTCTACCTCGAGAACG TCCATCTCATCGCCGGTCCCAAGCACAGCTATCCAGACCCCGCCGCCCAC CCCTCCAAGCGCTCTTCTAAACGCTCCTCTGCCTCCGCCCCGCACTGGCA CCAGACAAATGTCGGCCGCCTGCTCTTCAACGTTTCTGTCGAGATGTACG GCATCAAGGTCGAGTACCGCGACCCCCACTGCGTCGGTATCATCTCCGTT GCTTCGCTGCATGCCTACAGCGCCGGTCCCGAATGGCAGCGCCGCTTCGC GTCGCTCACCTCCGCCCTCGATCCGAACAGCCCCCACGCCACTGCAGTCA CCATGCGCAAACTCGTGCGTCTCGGTGGCGTCCACTGGGTCATGATCCCT CGCACCAACAACGCTGCGGAGCAACCCAGCACCGATCCGCCACAAGCACC GCCCGCCTCTCCCAGGTACGAGCACAGGCGCATGGATCTGCAATCCTACG AAAGTCGCGCCCCGATTCTGGATGGCATACCCATCTCGGTCAAAGTGCTA CTGCACAGTGGCACCGCCCAGATTGACGACCAGTTTATCCCGGGATTGCA TGCTGAAATTCATGTAGATATCGAAGACCCCAGCGTTAACCTCACTGCTC GTCAAATCAAATGGATTGACAACATTGTCAAGGCCGGTTTTGGCTTGGGT GCCGTCAGCAACCACCCGCCTTCGAAGTCCCACCCTGCGCGTTCCGCAGT GCCCACTCCCAAACGGCGAAGGCCCCAGCCACCTAGTGATACCAAGCAAT CTTCTGCGCCGACGAGCGAAGGTATTAATGAGGATGACACTGATCGTTCT GAAGCGGAAGGTTCCGTAGGTGCCAATGAAGAGCTCTTAATCAGCTCACA ACTGGAAAAAGAACTTGCGCATCAACTACGAAAATCACGCTCCAACTTTT CGGAAAACTCCTCGAGAAAACATGAAGCTCAGTACGCAGAACAACCCCTG CAGGAACATGATGAGGACAGCCACGAAGAATACGAAGAAGATGATTTAAT TATTGTACAGGACCCCAACTCTTCAGAAGAGCATGATGCACCTCCGCAAA GAGGAGGACTGCGATCATTTTGGCAAGCGATTGTGAGTGAAAATGCTGAT GATACCGTCGACGACGCGGCGATTGTTTTGGGCCTCGCCAATGGACACGC ACCAGACGAAGAAGACACTGACACGACTCCAGAAGCAGAAGACGGTGTTG AGGCTGAACATCAGTTTGCTCGGGAAGCAGTCAACGCGGCCGCAGAAGCT GGCGGTCTGACACTTCAACTCGTCTTGCGCACACCTGACCACCAAGCTTG GCAAAAGGTCAAGAAATTAGAAGAGGAACTTGAAGAAGAGAAAAAACTAA GAACCAGCTTGGAAGACGCAGAAAGGATTTTGCGAGAATCCGAACAGCGT GTGCAGGACTCGGAAACTCTGGCGCAAAAATTGCGAGACAGAAATGAAGC GCTTGTCAAAGAACTTCAAGACCTTGAGCAGATGACTTCTCAAGCTGGGA AGAACAAGGATGCTATGATCCGCCAAATGGAGGCTGCCCTGGTCAAAGCA GAGAAAAATCTTCAGGCCATGTTGCAAGCCAAGTTCAAAAAGGATGCGAA CAGTGCAATCACAAAGTCTATTCAAGTTAACACATATCAGGAAGAGGTAG ATGTGAAACCAGTATTCAAAAAACAATCTAGTACACTTCAGGAAGGGGAT GCCGAAAAACAAGTGCCTAAGAACCCGGAGAAAGCATCTGGTACTCAAAA AGTACCATCCTTGGGTTCTGGGGGGTCCGGCGATGATGGCGACCCAATGC AAAAGGAACATGTTCCGAAAATATTAGAGAACGGTGAACAAGAAAGCAAA GATTCTTTGGATCGGAGAGCGACCGATGTCGTTAACGAGCCTACTGAAAG GAACACCAAGATTCCACCATCGGTATCAGGATACAAAGAAAAAGACCGAA TAGCAGACATTGCGTCGCACGCGAACACAGCGACAAAGGGAAAGCAATCA GACGGTACCAACGGTACTATTCTTAACACGAGCGCTTCCGCTCCAGTCGG TGGTCAAGAGCAAAGTCTCACAGAGGTTCAGTTGCACAATGATAGATATA GTCAACTTTCTCTGGATGCACCATCTGTGTCAATTACAAAACTAATCGCA GACATGAGCACCAAGGTCGATGTTGTTGAATCTTCGCACAGCAAACACCT TGAAGCAACCATGTCTTCAGAAGGTCTAACTCTCATTTAG back to top
|