Gchil3228.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3228.t1
Unique NameGchil3228.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1175114..1176490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703605.1
Preferred nameMPK17
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K04371,ko:K11430,ko:K13105,ko:K19603,ko:K20290,ko:K20538,ko:K22312
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05202,ko05203,ko05205,ko05206,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map00310,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05202,map05203,map05205,map05206,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
GOsGO:0000165,GO:0000226,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009611,GO:0009636,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009753,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010638,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030865,GO:0031122,GO:0032870,GO:0033043,GO:0033993,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043622,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046777,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0097305,GO:0097306,GO:0097435,GO:0140096,GO:1900063,GO:1900064,GO:1901564,GO:1901700,GO:1901701
Evalue1.15e-139
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota
EC2.1.1.43,2.7.11.24,2.8.2.39
DescriptionMAP kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko03041,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3228Gchil3228Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1175114..1176490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3228.t1.stop1Gchil3228.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1175114..1175116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3228.t1.CDS1Gchil3228.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1175114..1176490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3228.t1.exon1Gchil3228.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1175114..1176490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3228.t1.start1Gchil3228.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1176488..1176490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3228.t1Gchil3228.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1175114..1176490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3228.t1 ID=Gchil3228.t1|Name=Gchil3228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp
MSSTRDRRARRESILRSFFTPSVQSSRYIVDKVVGEGAYGVVVAAFDQVK
RERVAVKRIKSVLDSSGMATRILRELKFLRFLHKHENIISVKDVLIPGQR
DSFNDVFVVFELMPTDLGRLLRSKTKLSPKHVKYVMFQLLRAVNFLHSAR
VFHRDLNPNNILVDANCQLRVCDFGLARAAFQRSEDVLFWTDYVATRWYR
APELILAHSTKYSTAIDMWSVGCIFAEILGRGKPLFPGLNAQHQFELILN
VTGKPSQAVIDRIGDQRLAQALGRLPSKPPASLSAIYRDADPGAINLLQR
LLAFDPDERITASEALSLAYFNEFKFLGLGETTDPLDEREFAFERVRLSA
EEMRMEFIKEILAYHPEARDELLIGRDRCARVSMLPSQAGQFRQDMEEYS
LTRRTISTDVSAVINSEQTARQDYRSTTLGEAELAKVGGAPAQHASSFAN
QAQQAMED*
back to top

spliced messenger RNA

>Gchil3228.t1 ID=Gchil3228.t1|Name=Gchil3228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00004382_pilon:1175114..1176490- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTACGCGCGACCGGCGCGCTCGTCGCGAGTCCATCTTGCGCAG
CTTCTTCACGCCCTCCGTCCAGTCATCGCGCTACATCGTCGACAAGGTCG
TCGGCGAGGGTGCGTACGGTGTCGTGGTTGCCGCCTTCGACCAGGTCAAG
AGGGAGCGTGTGGCCGTCAAGCGCATCAAGAGCGTGCTTGACTCCTCCGG
CATGGCCACCCGAATCCTGCGCGAGCTCAAGTTTCTGCGCTTTCTGCACA
AGCATGAGAACATCATCTCTGTCAAAGACGTGCTCATTCCCGGACAGCGT
GACAGTTTCAACGATGTGTTTGTGGTGTTTGAGCTCATGCCCACTGATCT
TGGCCGTTTGCTGCGCAGCAAGACTAAGCTCAGTCCCAAGCATGTCAAAT
ACGTCATGTTTCAACTGCTGCGAGCTGTTAACTTTCTACATTCGGCCCGC
GTCTTTCACCGCGATCTAAACCCCAATAACATCCTTGTCGACGCCAATTG
CCAGCTCAGAGTGTGTGACTTTGGTCTGGCCAGGGCTGCGTTCCAGAGAA
GTGAGGATGTGCTGTTCTGGACTGACTATGTGGCCACGCGCTGGTATAGG
GCGCCCGAGTTAATCTTGGCTCATTCTACCAAGTATTCCACCGCCATTGA
CATGTGGTCGGTTGGGTGTATCTTTGCTGAAATTCTCGGCCGCGGCAAGC
CGCTTTTCCCCGGGCTCAACGCTCAGCACCAGTTTGAGTTGATACTCAAC
GTGACTGGAAAACCGTCGCAGGCAGTGATTGACCGCATCGGCGACCAACG
TCTTGCGCAAGCTCTGGGACGCCTTCCGAGCAAACCGCCCGCATCGTTGT
CTGCCATCTACAGAGACGCAGACCCTGGAGCGATTAATCTGTTGCAGCGA
CTGTTGGCGTTTGATCCGGACGAGAGAATAACTGCGTCGGAAGCGCTTTC
TTTGGCGTACTTTAATGAGTTCAAGTTTCTTGGGTTGGGCGAAACGACGG
ACCCTCTGGATGAACGTGAATTTGCGTTTGAACGTGTGCGACTGAGCGCG
GAGGAGATGAGAATGGAGTTCATCAAGGAAATCTTGGCGTACCACCCGGA
GGCACGGGATGAACTATTGATTGGGCGCGACCGGTGCGCAAGGGTGTCAA
TGTTGCCAAGCCAGGCGGGGCAATTTCGACAGGACATGGAAGAATATTCG
TTGACGCGGCGCACGATATCGACGGACGTGTCAGCGGTGATTAATAGCGA
ACAGACAGCGAGGCAGGACTACAGAAGCACGACGTTGGGCGAGGCCGAAC
TGGCGAAAGTGGGCGGGGCGCCGGCACAGCATGCGAGCAGTTTTGCGAAC
CAGGCGCAGCAGGCGATGGAGGACTGA
back to top

protein sequence of Gchil3228.t1

>Gchil3228.t1 ID=Gchil3228.t1|Name=Gchil3228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=459bp
MSSTRDRRARRESILRSFFTPSVQSSRYIVDKVVGEGAYGVVVAAFDQVK
RERVAVKRIKSVLDSSGMATRILRELKFLRFLHKHENIISVKDVLIPGQR
DSFNDVFVVFELMPTDLGRLLRSKTKLSPKHVKYVMFQLLRAVNFLHSAR
VFHRDLNPNNILVDANCQLRVCDFGLARAAFQRSEDVLFWTDYVATRWYR
APELILAHSTKYSTAIDMWSVGCIFAEILGRGKPLFPGLNAQHQFELILN
VTGKPSQAVIDRIGDQRLAQALGRLPSKPPASLSAIYRDADPGAINLLQR
LLAFDPDERITASEALSLAYFNEFKFLGLGETTDPLDEREFAFERVRLSA
EEMRMEFIKEILAYHPEARDELLIGRDRCARVSMLPSQAGQFRQDMEEYS
LTRRTISTDVSAVINSEQTARQDYRSTTLGEAELAKVGGAPAQHASSFAN
QAQQAMED*
back to top

mRNA from alignment at tig00004382_pilon:1175114..1176490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3228.t1 ID=Gchil3228.t1|Name=Gchil3228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00004382_pilon:1175114..1176490- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTCTACGCGCGACCGGCGCGCTCGTCGCGAGTCCATCTTGCGCAG
CTTCTTCACGCCCTCCGTCCAGTCATCGCGCTACATCGTCGACAAGGTCG
TCGGCGAGGGTGCGTACGGTGTCGTGGTTGCCGCCTTCGACCAGGTCAAG
AGGGAGCGTGTGGCCGTCAAGCGCATCAAGAGCGTGCTTGACTCCTCCGG
CATGGCCACCCGAATCCTGCGCGAGCTCAAGTTTCTGCGCTTTCTGCACA
AGCATGAGAACATCATCTCTGTCAAAGACGTGCTCATTCCCGGACAGCGT
GACAGTTTCAACGATGTGTTTGTGGTGTTTGAGCTCATGCCCACTGATCT
TGGCCGTTTGCTGCGCAGCAAGACTAAGCTCAGTCCCAAGCATGTCAAAT
ACGTCATGTTTCAACTGCTGCGAGCTGTTAACTTTCTACATTCGGCCCGC
GTCTTTCACCGCGATCTAAACCCCAATAACATCCTTGTCGACGCCAATTG
CCAGCTCAGAGTGTGTGACTTTGGTCTGGCCAGGGCTGCGTTCCAGAGAA
GTGAGGATGTGCTGTTCTGGACTGACTATGTGGCCACGCGCTGGTATAGG
GCGCCCGAGTTAATCTTGGCTCATTCTACCAAGTATTCCACCGCCATTGA
CATGTGGTCGGTTGGGTGTATCTTTGCTGAAATTCTCGGCCGCGGCAAGC
CGCTTTTCCCCGGGCTCAACGCTCAGCACCAGTTTGAGTTGATACTCAAC
GTGACTGGAAAACCGTCGCAGGCAGTGATTGACCGCATCGGCGACCAACG
TCTTGCGCAAGCTCTGGGACGCCTTCCGAGCAAACCGCCCGCATCGTTGT
CTGCCATCTACAGAGACGCAGACCCTGGAGCGATTAATCTGTTGCAGCGA
CTGTTGGCGTTTGATCCGGACGAGAGAATAACTGCGTCGGAAGCGCTTTC
TTTGGCGTACTTTAATGAGTTCAAGTTTCTTGGGTTGGGCGAAACGACGG
ACCCTCTGGATGAACGTGAATTTGCGTTTGAACGTGTGCGACTGAGCGCG
GAGGAGATGAGAATGGAGTTCATCAAGGAAATCTTGGCGTACCACCCGGA
GGCACGGGATGAACTATTGATTGGGCGCGACCGGTGCGCAAGGGTGTCAA
TGTTGCCAAGCCAGGCGGGGCAATTTCGACAGGACATGGAAGAATATTCG
TTGACGCGGCGCACGATATCGACGGACGTGTCAGCGGTGATTAATAGCGA
ACAGACAGCGAGGCAGGACTACAGAAGCACGACGTTGGGCGAGGCCGAAC
TGGCGAAAGTGGGCGGGGCGCCGGCACAGCATGCGAGCAGTTTTGCGAAC
CAGGCGCAGCAGGCGATGGAGGACTGA
back to top

Coding sequence (CDS) from alignment at tig00004382_pilon:1175114..1176490-

>Gchil3228.t1 ID=Gchil3228.t1|Name=Gchil3228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00004382_pilon:1175114..1176490- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTCTACGCGCGACCGGCGCGCTCGTCGCGAGTCCATCTTGCGCAG
CTTCTTCACGCCCTCCGTCCAGTCATCGCGCTACATCGTCGACAAGGTCG
TCGGCGAGGGTGCGTACGGTGTCGTGGTTGCCGCCTTCGACCAGGTCAAG
AGGGAGCGTGTGGCCGTCAAGCGCATCAAGAGCGTGCTTGACTCCTCCGG
CATGGCCACCCGAATCCTGCGCGAGCTCAAGTTTCTGCGCTTTCTGCACA
AGCATGAGAACATCATCTCTGTCAAAGACGTGCTCATTCCCGGACAGCGT
GACAGTTTCAACGATGTGTTTGTGGTGTTTGAGCTCATGCCCACTGATCT
TGGCCGTTTGCTGCGCAGCAAGACTAAGCTCAGTCCCAAGCATGTCAAAT
ACGTCATGTTTCAACTGCTGCGAGCTGTTAACTTTCTACATTCGGCCCGC
GTCTTTCACCGCGATCTAAACCCCAATAACATCCTTGTCGACGCCAATTG
CCAGCTCAGAGTGTGTGACTTTGGTCTGGCCAGGGCTGCGTTCCAGAGAA
GTGAGGATGTGCTGTTCTGGACTGACTATGTGGCCACGCGCTGGTATAGG
GCGCCCGAGTTAATCTTGGCTCATTCTACCAAGTATTCCACCGCCATTGA
CATGTGGTCGGTTGGGTGTATCTTTGCTGAAATTCTCGGCCGCGGCAAGC
CGCTTTTCCCCGGGCTCAACGCTCAGCACCAGTTTGAGTTGATACTCAAC
GTGACTGGAAAACCGTCGCAGGCAGTGATTGACCGCATCGGCGACCAACG
TCTTGCGCAAGCTCTGGGACGCCTTCCGAGCAAACCGCCCGCATCGTTGT
CTGCCATCTACAGAGACGCAGACCCTGGAGCGATTAATCTGTTGCAGCGA
CTGTTGGCGTTTGATCCGGACGAGAGAATAACTGCGTCGGAAGCGCTTTC
TTTGGCGTACTTTAATGAGTTCAAGTTTCTTGGGTTGGGCGAAACGACGG
ACCCTCTGGATGAACGTGAATTTGCGTTTGAACGTGTGCGACTGAGCGCG
GAGGAGATGAGAATGGAGTTCATCAAGGAAATCTTGGCGTACCACCCGGA
GGCACGGGATGAACTATTGATTGGGCGCGACCGGTGCGCAAGGGTGTCAA
TGTTGCCAAGCCAGGCGGGGCAATTTCGACAGGACATGGAAGAATATTCG
TTGACGCGGCGCACGATATCGACGGACGTGTCAGCGGTGATTAATAGCGA
ACAGACAGCGAGGCAGGACTACAGAAGCACGACGTTGGGCGAGGCCGAAC
TGGCGAAAGTGGGCGGGGCGCCGGCACAGCATGCGAGCAGTTTTGCGAAC
CAGGCGCAGCAGGCGATGGAGGACTGA
back to top