Gchil3214.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3214.t1
Unique Name	Gchil3214.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1039041..1040318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1392489.JPOL01000002_gene2530
Max annot lvl	976\|Bacteroidetes
Evalue	4.27e-24
EggNOG OGs	COG1404@1\|root,COG2374@1\|root,COG3291@1\|root,COG3391@1\|root,COG1404@2\|Bacteria,COG2374@2\|Bacteria,COG3291@2\|Bacteria,COG3391@2\|Bacteria,4NGJJ@976\|Bacteroidetes,1I3TI@117743\|Flavobacteriia
Description	Belongs to the peptidase S8 family
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3214	Gchil3214	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1039041..1040318 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3214.t1.start1	Gchil3214.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1039041..1039043 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3214.t1.CDS1	Gchil3214.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1039041..1040318 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3214.t1.exon1	Gchil3214.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1039041..1040318 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3214.t1.stop1	Gchil3214.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1040316..1040318 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3214.t1	Gchil3214.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1039041..1040318 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1039041..1040318+
coding sequence from alignment at tig00004382_pilon:1039041..1040318+

mRNA sequence

>Gchil3214.t1 ID=Gchil3214.t1|Name=Gchil3214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MNCTTKNGFKLCEIPLDIPPPPFDYGIPLDRNISRPRQGPIQQQNVSVRQ
NDGKFIADIFGEKTDSRVKAVQYCMQLASESWPSAMPVTVKVNFSDMGSG
LLLGSAQPSRSWIVNDFICPVALAEAIVVEDLNSGLSGNSAYDILMTINT
GTQWYEGTDANVPRGHFDLVTVCLHEIYHGLYMTSGNIGVSWSAVQQSYS
AVFFRDNVGGRFDAFMANQDGCQISAYKDSPQDLGTVLTGNNLWFGSDSK
IVARLHAPTPFVAGSSLYHLSESVYGHTGDDNDLMTPAISSNYGQHNIGR
VLAEMQKLIMNVDGKLGAKACATINAPQVDDSPIAEQRPGVPDNETEGVG
CGDGFRISIGVKCLNGWILVGSGIAAVAFVAISAVVVAMAISSRHREAAM
QRERRQQRRAREHISIGDGNAGGLV*

spliced messenger RNA

>Gchil3214.t1 ID=Gchil3214.t1|Name=Gchil3214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004382_pilon:1039041..1040318+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGTACCACCAAGAACGGTTTCAAACTGTGTGAGATTCCTCTTGA
CATCCCACCACCCCCCTTCGACTATGGCATCCCACTTGACAGAAACATAT
CTCGCCCGAGACAAGGACCAATCCAGCAACAAAATGTGTCTGTTCGCCAG
AACGATGGCAAGTTTATCGCGGATATTTTCGGAGAGAAAACAGACTCTCG
TGTGAAAGCGGTGCAATACTGCATGCAACTCGCATCCGAATCTTGGCCGT
CTGCGATGCCTGTGACGGTGAAAGTCAACTTCTCAGATATGGGAAGCGGA
CTGTTGTTAGGCTCGGCACAGCCTTCGAGAAGTTGGATCGTAAATGACTT
CATCTGCCCCGTGGCTCTTGCTGAAGCAATTGTAGTGGAAGATTTAAACA
GTGGTTTAAGTGGAAACTCGGCTTATGACATTCTCATGACCATCAACACT
GGGACGCAATGGTACGAAGGCACTGATGCCAATGTTCCAAGAGGGCATTT
CGACCTAGTCACAGTTTGTTTACATGAAATATATCACGGCCTGTACATGA
CCAGTGGAAATATTGGAGTATCTTGGAGTGCGGTGCAACAATCATACTCG
GCGGTATTCTTCCGAGACAACGTGGGTGGAAGATTTGATGCGTTCATGGC
CAACCAAGACGGTTGCCAAATCTCAGCTTATAAGGATAGTCCGCAAGATC
TGGGCACTGTTCTTACGGGGAACAATCTTTGGTTTGGCTCCGATTCGAAG
ATCGTAGCCAGACTGCATGCACCCACACCATTTGTTGCCGGGTCTTCGCT
TTACCATCTGTCCGAGTCGGTGTACGGACACACTGGGGACGATAATGATC
TGATGACGCCGGCCATAAGTTCCAACTATGGACAGCATAACATTGGACGT
GTGTTGGCGGAGATGCAGAAGTTAATAATGAACGTTGATGGAAAACTTGG
AGCAAAAGCATGTGCCACAATCAACGCGCCGCAGGTGGATGATTCTCCGA
TTGCAGAACAGAGGCCGGGGGTTCCTGATAACGAGACGGAGGGTGTTGGC
TGCGGGGATGGGTTTCGTATAAGCATTGGGGTAAAGTGTCTGAATGGATG
GATACTTGTTGGCAGTGGGATTGCAGCCGTAGCGTTTGTAGCGATTTCAG
CTGTTGTGGTAGCTATGGCGATTTCGAGCCGTCACAGAGAAGCTGCAATG
CAACGCGAAAGAAGACAGCAGCGGAGAGCTCGGGAACATATTTCGATCGG
TGACGGGAACGCTGGTGGGCTAGTGTAG

protein sequence of Gchil3214.t1

>Gchil3214.t1 ID=Gchil3214.t1|Name=Gchil3214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MNCTTKNGFKLCEIPLDIPPPPFDYGIPLDRNISRPRQGPIQQQNVSVRQ
NDGKFIADIFGEKTDSRVKAVQYCMQLASESWPSAMPVTVKVNFSDMGSG
LLLGSAQPSRSWIVNDFICPVALAEAIVVEDLNSGLSGNSAYDILMTINT
GTQWYEGTDANVPRGHFDLVTVCLHEIYHGLYMTSGNIGVSWSAVQQSYS
AVFFRDNVGGRFDAFMANQDGCQISAYKDSPQDLGTVLTGNNLWFGSDSK
IVARLHAPTPFVAGSSLYHLSESVYGHTGDDNDLMTPAISSNYGQHNIGR
VLAEMQKLIMNVDGKLGAKACATINAPQVDDSPIAEQRPGVPDNETEGVG
CGDGFRISIGVKCLNGWILVGSGIAAVAFVAISAVVVAMAISSRHREAAM
QRERRQQRRAREHISIGDGNAGGLV*

mRNA from alignment at tig00004382_pilon:1039041..1040318+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3214.t1 ID=Gchil3214.t1|Name=Gchil3214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004382_pilon:1039041..1040318+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACTGTACCACCAAGAACGGTTTCAAACTGTGTGAGATTCCTCTTGA
CATCCCACCACCCCCCTTCGACTATGGCATCCCACTTGACAGAAACATAT
CTCGCCCGAGACAAGGACCAATCCAGCAACAAAATGTGTCTGTTCGCCAG
AACGATGGCAAGTTTATCGCGGATATTTTCGGAGAGAAAACAGACTCTCG
TGTGAAAGCGGTGCAATACTGCATGCAACTCGCATCCGAATCTTGGCCGT
CTGCGATGCCTGTGACGGTGAAAGTCAACTTCTCAGATATGGGAAGCGGA
CTGTTGTTAGGCTCGGCACAGCCTTCGAGAAGTTGGATCGTAAATGACTT
CATCTGCCCCGTGGCTCTTGCTGAAGCAATTGTAGTGGAAGATTTAAACA
GTGGTTTAAGTGGAAACTCGGCTTATGACATTCTCATGACCATCAACACT
GGGACGCAATGGTACGAAGGCACTGATGCCAATGTTCCAAGAGGGCATTT
CGACCTAGTCACAGTTTGTTTACATGAAATATATCACGGCCTGTACATGA
CCAGTGGAAATATTGGAGTATCTTGGAGTGCGGTGCAACAATCATACTCG
GCGGTATTCTTCCGAGACAACGTGGGTGGAAGATTTGATGCGTTCATGGC
CAACCAAGACGGTTGCCAAATCTCAGCTTATAAGGATAGTCCGCAAGATC
TGGGCACTGTTCTTACGGGGAACAATCTTTGGTTTGGCTCCGATTCGAAG
ATCGTAGCCAGACTGCATGCACCCACACCATTTGTTGCCGGGTCTTCGCT
TTACCATCTGTCCGAGTCGGTGTACGGACACACTGGGGACGATAATGATC
TGATGACGCCGGCCATAAGTTCCAACTATGGACAGCATAACATTGGACGT
GTGTTGGCGGAGATGCAGAAGTTAATAATGAACGTTGATGGAAAACTTGG
AGCAAAAGCATGTGCCACAATCAACGCGCCGCAGGTGGATGATTCTCCGA
TTGCAGAACAGAGGCCGGGGGTTCCTGATAACGAGACGGAGGGTGTTGGC
TGCGGGGATGGGTTTCGTATAAGCATTGGGGTAAAGTGTCTGAATGGATG
GATACTTGTTGGCAGTGGGATTGCAGCCGTAGCGTTTGTAGCGATTTCAG
CTGTTGTGGTAGCTATGGCGATTTCGAGCCGTCACAGAGAAGCTGCAATG
CAACGCGAAAGAAGACAGCAGCGGAGAGCTCGGGAACATATTTCGATCGG
TGACGGGAACGCTGGTGGGCTAGTGTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:1039041..1040318+

>Gchil3214.t1 ID=Gchil3214.t1|Name=Gchil3214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004382_pilon:1039041..1040318+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACTGTACCACCAAGAACGGTTTCAAACTGTGTGAGATTCCTCTTGA
CATCCCACCACCCCCCTTCGACTATGGCATCCCACTTGACAGAAACATAT
CTCGCCCGAGACAAGGACCAATCCAGCAACAAAATGTGTCTGTTCGCCAG
AACGATGGCAAGTTTATCGCGGATATTTTCGGAGAGAAAACAGACTCTCG
TGTGAAAGCGGTGCAATACTGCATGCAACTCGCATCCGAATCTTGGCCGT
CTGCGATGCCTGTGACGGTGAAAGTCAACTTCTCAGATATGGGAAGCGGA
CTGTTGTTAGGCTCGGCACAGCCTTCGAGAAGTTGGATCGTAAATGACTT
CATCTGCCCCGTGGCTCTTGCTGAAGCAATTGTAGTGGAAGATTTAAACA
GTGGTTTAAGTGGAAACTCGGCTTATGACATTCTCATGACCATCAACACT
GGGACGCAATGGTACGAAGGCACTGATGCCAATGTTCCAAGAGGGCATTT
CGACCTAGTCACAGTTTGTTTACATGAAATATATCACGGCCTGTACATGA
CCAGTGGAAATATTGGAGTATCTTGGAGTGCGGTGCAACAATCATACTCG
GCGGTATTCTTCCGAGACAACGTGGGTGGAAGATTTGATGCGTTCATGGC
CAACCAAGACGGTTGCCAAATCTCAGCTTATAAGGATAGTCCGCAAGATC
TGGGCACTGTTCTTACGGGGAACAATCTTTGGTTTGGCTCCGATTCGAAG
ATCGTAGCCAGACTGCATGCACCCACACCATTTGTTGCCGGGTCTTCGCT
TTACCATCTGTCCGAGTCGGTGTACGGACACACTGGGGACGATAATGATC
TGATGACGCCGGCCATAAGTTCCAACTATGGACAGCATAACATTGGACGT
GTGTTGGCGGAGATGCAGAAGTTAATAATGAACGTTGATGGAAAACTTGG
AGCAAAAGCATGTGCCACAATCAACGCGCCGCAGGTGGATGATTCTCCGA
TTGCAGAACAGAGGCCGGGGGTTCCTGATAACGAGACGGAGGGTGTTGGC
TGCGGGGATGGGTTTCGTATAAGCATTGGGGTAAAGTGTCTGAATGGATG
GATACTTGTTGGCAGTGGGATTGCAGCCGTAGCGTTTGTAGCGATTTCAG
CTGTTGTGGTAGCTATGGCGATTTCGAGCCGTCACAGAGAAGCTGCAATG
CAACGCGAAAGAAGACAGCAGCGGAGAGCTCGGGAACATATTTCGATCGG
TGACGGGAACGCTGGTGGGCTAGTGTAG