Gchil3211.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3211.t1
Unique NameGchil3211.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1028609..1029652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3211Gchil3211Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1028609..1029652 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3211.t1.start1Gchil3211.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1028609..1028611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3211.t1.CDS1Gchil3211.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1028609..1029652 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3211.t1.exon1Gchil3211.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1028609..1029652 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3211.t1.stop1Gchil3211.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1029650..1029652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3211.t1Gchil3211.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1028609..1029652 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3211.t1 ID=Gchil3211.t1|Name=Gchil3211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp
MFPYVVAFICSSLLAVQLYDLLSVLSDFDSFSTLLTSGPIQLQPSANSVL
AVSSFIIISIFAIVLVSSASPPTRNSPHYCPISVTAPDDINAFYYFPTTI
KTFSKPVVSPPAAQILSPPSNELQTSSLAPLAESFSEVTFTFGTNRPEVY
LKMCEQEDMNTICHCPCNHTRSDLRKYPHINRLTSSFTPSTPSFNSDSVF
EIDSDQMNSLSGAAATTENTLAPSYHAIDMTMLPDVPSLEEVVCAPAVQP
TVQPTVPPFVPPTIESDVCSVHFPPLLEIQLDTPVTTRALATDGSVIPND
HAFLLGEVKQFIVAQFKLFELVVTFVAFMRTLVDHAVNQTNLRRVPN*
back to top

spliced messenger RNA

>Gchil3211.t1 ID=Gchil3211.t1|Name=Gchil3211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004382_pilon:1028609..1029652+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCGTACGTCGTCGCTTTCATCTGCTCATCGCTGCTAGCTGTGCA
GCTGTACGACTTGCTCTCCGTCCTCAGCGATTTCGATTCCTTTTCAACCC
TGCTCACCTCAGGCCCCATTCAATTGCAACCTTCTGCAAATTCTGTCCTT
GCCGTATCTTCTTTCATCATCATTTCAATCTTCGCCATAGTCCTCGTGTC
GTCGGCCAGCCCGCCTACGCGAAATTCCCCCCACTACTGTCCCATTTCCG
TCACTGCTCCCGACGATATTAATGCCTTCTACTACTTTCCCACAACCATC
AAGACCTTTTCAAAGCCCGTCGTCAGTCCACCCGCTGCGCAAATCTTGTC
CCCGCCTTCCAATGAACTCCAAACCTCCTCGCTTGCTCCCCTTGCTGAGT
CGTTCAGCGAGGTCACTTTCACCTTTGGCACCAACCGCCCGGAAGTGTAT
CTTAAGATGTGCGAGCAGGAGGACATGAATACCATATGCCACTGCCCATG
TAATCACACGCGCTCTGATCTCCGCAAGTATCCACACATCAATCGTTTAA
CGTCTTCCTTTACCCCTTCTACGCCGTCCTTCAACTCTGATTCGGTCTTC
GAGATAGATTCCGACCAGATGAACTCACTCAGTGGCGCCGCTGCCACTAC
GGAGAACACTCTGGCCCCGAGCTATCATGCTATTGACATGACAATGCTCC
CTGACGTGCCTTCGCTTGAAGAAGTTGTCTGCGCCCCTGCCGTTCAGCCT
ACTGTTCAGCCTACTGTTCCCCCCTTTGTGCCCCCTACTATTGAGTCAGA
TGTTTGCAGCGTTCATTTCCCCCCATTGCTAGAAATTCAATTGGACACCC
CTGTTACTACTCGTGCGTTGGCTACAGACGGATCTGTCATTCCCAACGAT
CATGCCTTTTTGCTTGGCGAGGTTAAGCAATTCATCGTGGCTCAATTCAA
ATTGTTCGAGCTTGTTGTGACTTTCGTCGCTTTCATGAGAACATTGGTAG
ATCATGCTGTGAACCAAACAAACTTGCGTCGCGTTCCCAACTAG
back to top

protein sequence of Gchil3211.t1

>Gchil3211.t1 ID=Gchil3211.t1|Name=Gchil3211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=348bp
MFPYVVAFICSSLLAVQLYDLLSVLSDFDSFSTLLTSGPIQLQPSANSVL
AVSSFIIISIFAIVLVSSASPPTRNSPHYCPISVTAPDDINAFYYFPTTI
KTFSKPVVSPPAAQILSPPSNELQTSSLAPLAESFSEVTFTFGTNRPEVY
LKMCEQEDMNTICHCPCNHTRSDLRKYPHINRLTSSFTPSTPSFNSDSVF
EIDSDQMNSLSGAAATTENTLAPSYHAIDMTMLPDVPSLEEVVCAPAVQP
TVQPTVPPFVPPTIESDVCSVHFPPLLEIQLDTPVTTRALATDGSVIPND
HAFLLGEVKQFIVAQFKLFELVVTFVAFMRTLVDHAVNQTNLRRVPN*
back to top

mRNA from alignment at tig00004382_pilon:1028609..1029652+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3211.t1 ID=Gchil3211.t1|Name=Gchil3211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004382_pilon:1028609..1029652+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCGTACGTCGTCGCTTTCATCTGCTCATCGCTGCTAGCTGTGCA
GCTGTACGACTTGCTCTCCGTCCTCAGCGATTTCGATTCCTTTTCAACCC
TGCTCACCTCAGGCCCCATTCAATTGCAACCTTCTGCAAATTCTGTCCTT
GCCGTATCTTCTTTCATCATCATTTCAATCTTCGCCATAGTCCTCGTGTC
GTCGGCCAGCCCGCCTACGCGAAATTCCCCCCACTACTGTCCCATTTCCG
TCACTGCTCCCGACGATATTAATGCCTTCTACTACTTTCCCACAACCATC
AAGACCTTTTCAAAGCCCGTCGTCAGTCCACCCGCTGCGCAAATCTTGTC
CCCGCCTTCCAATGAACTCCAAACCTCCTCGCTTGCTCCCCTTGCTGAGT
CGTTCAGCGAGGTCACTTTCACCTTTGGCACCAACCGCCCGGAAGTGTAT
CTTAAGATGTGCGAGCAGGAGGACATGAATACCATATGCCACTGCCCATG
TAATCACACGCGCTCTGATCTCCGCAAGTATCCACACATCAATCGTTTAA
CGTCTTCCTTTACCCCTTCTACGCCGTCCTTCAACTCTGATTCGGTCTTC
GAGATAGATTCCGACCAGATGAACTCACTCAGTGGCGCCGCTGCCACTAC
GGAGAACACTCTGGCCCCGAGCTATCATGCTATTGACATGACAATGCTCC
CTGACGTGCCTTCGCTTGAAGAAGTTGTCTGCGCCCCTGCCGTTCAGCCT
ACTGTTCAGCCTACTGTTCCCCCCTTTGTGCCCCCTACTATTGAGTCAGA
TGTTTGCAGCGTTCATTTCCCCCCATTGCTAGAAATTCAATTGGACACCC
CTGTTACTACTCGTGCGTTGGCTACAGACGGATCTGTCATTCCCAACGAT
CATGCCTTTTTGCTTGGCGAGGTTAAGCAATTCATCGTGGCTCAATTCAA
ATTGTTCGAGCTTGTTGTGACTTTCGTCGCTTTCATGAGAACATTGGTAG
ATCATGCTGTGAACCAAACAAACTTGCGTCGCGTTCCCAACTAG
back to top

Coding sequence (CDS) from alignment at tig00004382_pilon:1028609..1029652+

>Gchil3211.t1 ID=Gchil3211.t1|Name=Gchil3211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00004382_pilon:1028609..1029652+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCGTACGTCGTCGCTTTCATCTGCTCATCGCTGCTAGCTGTGCA
GCTGTACGACTTGCTCTCCGTCCTCAGCGATTTCGATTCCTTTTCAACCC
TGCTCACCTCAGGCCCCATTCAATTGCAACCTTCTGCAAATTCTGTCCTT
GCCGTATCTTCTTTCATCATCATTTCAATCTTCGCCATAGTCCTCGTGTC
GTCGGCCAGCCCGCCTACGCGAAATTCCCCCCACTACTGTCCCATTTCCG
TCACTGCTCCCGACGATATTAATGCCTTCTACTACTTTCCCACAACCATC
AAGACCTTTTCAAAGCCCGTCGTCAGTCCACCCGCTGCGCAAATCTTGTC
CCCGCCTTCCAATGAACTCCAAACCTCCTCGCTTGCTCCCCTTGCTGAGT
CGTTCAGCGAGGTCACTTTCACCTTTGGCACCAACCGCCCGGAAGTGTAT
CTTAAGATGTGCGAGCAGGAGGACATGAATACCATATGCCACTGCCCATG
TAATCACACGCGCTCTGATCTCCGCAAGTATCCACACATCAATCGTTTAA
CGTCTTCCTTTACCCCTTCTACGCCGTCCTTCAACTCTGATTCGGTCTTC
GAGATAGATTCCGACCAGATGAACTCACTCAGTGGCGCCGCTGCCACTAC
GGAGAACACTCTGGCCCCGAGCTATCATGCTATTGACATGACAATGCTCC
CTGACGTGCCTTCGCTTGAAGAAGTTGTCTGCGCCCCTGCCGTTCAGCCT
ACTGTTCAGCCTACTGTTCCCCCCTTTGTGCCCCCTACTATTGAGTCAGA
TGTTTGCAGCGTTCATTTCCCCCCATTGCTAGAAATTCAATTGGACACCC
CTGTTACTACTCGTGCGTTGGCTACAGACGGATCTGTCATTCCCAACGAT
CATGCCTTTTTGCTTGGCGAGGTTAAGCAATTCATCGTGGCTCAATTCAA
ATTGTTCGAGCTTGTTGTGACTTTCGTCGCTTTCATGAGAACATTGGTAG
ATCATGCTGTGAACCAAACAAACTTGCGTCGCGTTCCCAACTAG
back to top