Gchil3204.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3204.t1
Unique Name	Gchil3204.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	619

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:897523..899379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3204	Gchil3204	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 897523..899379 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3204.t1.start1	Gchil3204.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 897523..897525 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3204.t1.CDS1	Gchil3204.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 897523..899379 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3204.t1.exon1	Gchil3204.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 897523..899379 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3204.t1.stop1	Gchil3204.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 899377..899379 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3204.t1	Gchil3204.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 897523..899379 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:897523..899379+
coding sequence from alignment at tig00004382_pilon:897523..899379+

mRNA sequence

>Gchil3204.t1 ID=Gchil3204.t1|Name=Gchil3204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=619bp
MGSFTTSEDRHKTGTLVQLSSTPPTFGDKQLLATAISTSPLKGMNPYVLN
PLSGPSASAPADNEAPQQGGYFSGLDAAPSGTEPSASASNRHPQEDLDIN
AVAWNSAYAMPLVANSRGWISNESFRRCSLLTDPVIYCRAPWFHPTAVRD
DELIDSYVEDGLLPGGLPVEVVRSPDWRARVPIEPQYLYRGRGESLDKAR
AAMAALAYQRLERSRFDHLVPPEYGFDVAYYRTYGEVFYGDNLAAFPEAE
FRGPGFPLREDMLQWSRPILRAEFRYLQRQFTQYGFDRRVRFERRSRSRF
GFLVPYPHVELERIRNTAKVGRFVPLPAWWSKVEVPPGCFAELPPCIYYI
GSRFMHDPNSGYWALVAAEWAARVAAHLLWDAHDHFRIWYIPPMLRTIMR
QIDLVPALGSASSVQDLYLILDVIDNTQWDRVPVENQPAGEGSARNKSPG
RYDPGSGNWVYYNPFEGVRISAAQARALMDSPRSMPVGHPTGFIYTDDYE
YEPPVDLDDPALDNNTPAPSGVLPVEPSAPFQPVGTTSAAAANASGGGSS
APPGWGVDTLAQAPVATPQTDSLRQGLVNAGIPIPPGMTDVSQMLAFASA
YHQGQNPNGGAGPSSGFP*

spliced messenger RNA

>Gchil3204.t1 ID=Gchil3204.t1|Name=Gchil3204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00004382_pilon:897523..899379+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggggtccttcaccacttctgaggatcgccacaaaaccggcacattggt
acaactttcttctactcctccgactttcggcgataagcaacttctcgcaa
cagcaatctcaaccagccctctcaagggaatgaacccatacgtcctcaac
ccactctcggggccatcggcctccgcgccggcggacaacgaagctcccca
gcagggtggatatttctccggtttggatgcggctccgtcaggtaccgaac
cttccgcctcggcgagcaaccgacatcctcaggaggatttggacattaac
gcggtggcgtggaactccgcttatgcgatgcccttggtagcaaactccag
aggttggatctcaaacgaatcctttcgaaggtgtagtctccttaccgatc
cggtgatatattgccgcgccccgtggttccatccgacagcggttcgcgac
gatgagctcatcgactcctacgtggaggacggcttattgccgggtggcct
acctgtcgaggttgtacgttctcccgattggagggcgcgggtaccaatag
agcctcagtatctataccgcggtcgcggggagtccctggacaaggcgcgc
gcagcgatggcggctctggcctaccagcgattggagaggtcacgctttga
ccatctggttcccccggagtacgggttcgatgtcgcctattaccgcacgt
acggtgaggtcttctacggggataacctggcagcctttcccgaagccgag
ttccgcggaccgggttttcctctccgagaagatatgctccaatggagtcg
tcccatccttcgggctgaattcaggtaccttcaacggcagtttacccagt
atggattcgatcgacgcgtgcgcttcgagcgccgctcgcgctcccgtttc
gggttccttgtcccgtatcctcacgtggaactggagcgtatccgtaacac
ggcaaaggttgggcgattcgtgccacttccagcttggtggagtaaggtcg
aggtccccccagggtgctttgctgaactgcccccatgcatctactatatc
gggtctcgtttcatgcacgacccgaactcgggatactgggccctcgttgc
agccgagtgggcagcccgcgtagcggcgcacctcctctgggatgctcatg
accatttccgtatctggtatattcctccgatgctacggaccatcatgcgt
cagatcgaccttgtcccagcgttgggttcggccagcagcgtgcaggacct
gtatctaatcttggacgtgatcgacaacacccaatgggatcgagttccag
tggaaaatcagcccgcaggggaaggatccgcgcgaaacaagtctcctggc
cggtacgatccgggctccggtaactgggtttattacaatcccttcgaagg
ggttcgcatcagcgcagcgcaggcacgggcgctgatggactcgcctcgat
cgatgcctgtgggacacccgacggggttcatttataccgacgattacgag
tacgagcctccagtagacctggacgatccagcgttggataacaacacgcc
agctcctagtggagtactccctgtggagccatctgcacccttccaaccag
tgggaacgacctcagctgcggcggcgaatgcatccggtggcggttcatct
gctccccccggatggggtgtggacacccttgcgcaggcgccggttgccac
tccgcaaacggatagtctgcgacaaggcctcgtgaacgcgggcattccga
ttcccccgggtatgaccgatgtgagccagatgttggctttcgcctcggcg
taccatcagggtcaaaatcccaacggtggggcgggtccctcctcgggctt
tccgtag

protein sequence of Gchil3204.t1

>Gchil3204.t1 ID=Gchil3204.t1|Name=Gchil3204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=619bp
MGSFTTSEDRHKTGTLVQLSSTPPTFGDKQLLATAISTSPLKGMNPYVLN
PLSGPSASAPADNEAPQQGGYFSGLDAAPSGTEPSASASNRHPQEDLDIN
AVAWNSAYAMPLVANSRGWISNESFRRCSLLTDPVIYCRAPWFHPTAVRD
DELIDSYVEDGLLPGGLPVEVVRSPDWRARVPIEPQYLYRGRGESLDKAR
AAMAALAYQRLERSRFDHLVPPEYGFDVAYYRTYGEVFYGDNLAAFPEAE
FRGPGFPLREDMLQWSRPILRAEFRYLQRQFTQYGFDRRVRFERRSRSRF
GFLVPYPHVELERIRNTAKVGRFVPLPAWWSKVEVPPGCFAELPPCIYYI
GSRFMHDPNSGYWALVAAEWAARVAAHLLWDAHDHFRIWYIPPMLRTIMR
QIDLVPALGSASSVQDLYLILDVIDNTQWDRVPVENQPAGEGSARNKSPG
RYDPGSGNWVYYNPFEGVRISAAQARALMDSPRSMPVGHPTGFIYTDDYE
YEPPVDLDDPALDNNTPAPSGVLPVEPSAPFQPVGTTSAAAANASGGGSS
APPGWGVDTLAQAPVATPQTDSLRQGLVNAGIPIPPGMTDVSQMLAFASA
YHQGQNPNGGAGPSSGFP*

mRNA from alignment at tig00004382_pilon:897523..899379+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3204.t1 ID=Gchil3204.t1|Name=Gchil3204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00004382_pilon:897523..899379+ (Gracilaria chilensis NLEC103_M9 male)
atggggtccttcaccacttctgaggatcgccacaaaaccggcacattggt
acaactttcttctactcctccgactttcggcgataagcaacttctcgcaa
cagcaatctcaaccagccctctcaagggaatgaacccatacgtcctcaac
ccactctcggggccatcggcctccgcgccggcggacaacgaagctcccca
gcagggtggatatttctccggtttggatgcggctccgtcaggtaccgaac
cttccgcctcggcgagcaaccgacatcctcaggaggatttggacattaac
gcggtggcgtggaactccgcttatgcgatgcccttggtagcaaactccag
aggttggatctcaaacgaatcctttcgaaggtgtagtctccttaccgatc
cggtgatatattgccgcgccccgtggttccatccgacagcggttcgcgac
gatgagctcatcgactcctacgtggaggacggcttattgccgggtggcct
acctgtcgaggttgtacgttctcccgattggagggcgcgggtaccaatag
agcctcagtatctataccgcggtcgcggggagtccctggacaaggcgcgc
gcagcgatggcggctctggcctaccagcgattggagaggtcacgctttga
ccatctggttcccccggagtacgggttcgatgtcgcctattaccgcacgt
acggtgaggtcttctacggggataacctggcagcctttcccgaagccgag
ttccgcggaccgggttttcctctccgagaagatatgctccaatggagtcg
tcccatccttcgggctgaattcaggtaccttcaacggcagtttacccagt
atggattcgatcgacgcgtgcgcttcgagcgccgctcgcgctcccgtttc
gggttccttgtcccgtatcctcacgtggaactggagcgtatccgtaacac
ggcaaaggttgggcgattcgtgccacttccagcttggtggagtaaggtcg
aggtccccccagggtgctttgctgaactgcccccatgcatctactatatc
gggtctcgtttcatgcacgacccgaactcgggatactgggccctcgttgc
agccgagtgggcagcccgcgtagcggcgcacctcctctgggatgctcatg
accatttccgtatctggtatattcctccgatgctacggaccatcatgcgt
cagatcgaccttgtcccagcgttgggttcggccagcagcgtgcaggacct
gtatctaatcttggacgtgatcgacaacacccaatgggatcgagttccag
tggaaaatcagcccgcaggggaaggatccgcgcgaaacaagtctcctggc
cggtacgatccgggctccggtaactgggtttattacaatcccttcgaagg
ggttcgcatcagcgcagcgcaggcacgggcgctgatggactcgcctcgat
cgatgcctgtgggacacccgacggggttcatttataccgacgattacgag
tacgagcctccagtagacctggacgatccagcgttggataacaacacgcc
agctcctagtggagtactccctgtggagccatctgcacccttccaaccag
tgggaacgacctcagctgcggcggcgaatgcatccggtggcggttcatct
gctccccccggatggggtgtggacacccttgcgcaggcgccggttgccac
tccgcaaacggatagtctgcgacaaggcctcgtgaacgcgggcattccga
ttcccccgggtatgaccgatgtgagccagatgttggctttcgcctcggcg
taccatcagggtcaaaatcccaacggtggggcgggtccctcctcgggctt
tccgtag

Coding sequence (CDS) from alignment at tig00004382_pilon:897523..899379+

>Gchil3204.t1 ID=Gchil3204.t1|Name=Gchil3204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1857bp|location=Sequence derived from alignment at tig00004382_pilon:897523..899379+ (Gracilaria chilensis NLEC103_M9 male)
atggggtccttcaccacttctgaggatcgccacaaaaccggcacattggt
acaactttcttctactcctccgactttcggcgataagcaacttctcgcaa
cagcaatctcaaccagccctctcaagggaatgaacccatacgtcctcaac
ccactctcggggccatcggcctccgcgccggcggacaacgaagctcccca
gcagggtggatatttctccggtttggatgcggctccgtcaggtaccgaac
cttccgcctcggcgagcaaccgacatcctcaggaggatttggacattaac
gcggtggcgtggaactccgcttatgcgatgcccttggtagcaaactccag
aggttggatctcaaacgaatcctttcgaaggtgtagtctccttaccgatc
cggtgatatattgccgcgccccgtggttccatccgacagcggttcgcgac
gatgagctcatcgactcctacgtggaggacggcttattgccgggtggcct
acctgtcgaggttgtacgttctcccgattggagggcgcgggtaccaatag
agcctcagtatctataccgcggtcgcggggagtccctggacaaggcgcgc
gcagcgatggcggctctggcctaccagcgattggagaggtcacgctttga
ccatctggttcccccggagtacgggttcgatgtcgcctattaccgcacgt
acggtgaggtcttctacggggataacctggcagcctttcccgaagccgag
ttccgcggaccgggttttcctctccgagaagatatgctccaatggagtcg
tcccatccttcgggctgaattcaggtaccttcaacggcagtttacccagt
atggattcgatcgacgcgtgcgcttcgagcgccgctcgcgctcccgtttc
gggttccttgtcccgtatcctcacgtggaactggagcgtatccgtaacac
ggcaaaggttgggcgattcgtgccacttccagcttggtggagtaaggtcg
aggtccccccagggtgctttgctgaactgcccccatgcatctactatatc
gggtctcgtttcatgcacgacccgaactcgggatactgggccctcgttgc
agccgagtgggcagcccgcgtagcggcgcacctcctctgggatgctcatg
accatttccgtatctggtatattcctccgatgctacggaccatcatgcgt
cagatcgaccttgtcccagcgttgggttcggccagcagcgtgcaggacct
gtatctaatcttggacgtgatcgacaacacccaatgggatcgagttccag
tggaaaatcagcccgcaggggaaggatccgcgcgaaacaagtctcctggc
cggtacgatccgggctccggtaactgggtttattacaatcccttcgaagg
ggttcgcatcagcgcagcgcaggcacgggcgctgatggactcgcctcgat
cgatgcctgtgggacacccgacggggttcatttataccgacgattacgag
tacgagcctccagtagacctggacgatccagcgttggataacaacacgcc
agctcctagtggagtactccctgtggagccatctgcacccttccaaccag
tgggaacgacctcagctgcggcggcgaatgcatccggtggcggttcatct
gctccccccggatggggtgtggacacccttgcgcaggcgccggttgccac
tccgcaaacggatagtctgcgacaaggcctcgtgaacgcgggcattccga
ttcccccgggtatgaccgatgtgagccagatgttggctttcgcctcggcg
taccatcagggtcaaaatcccaacggtggggcgggtccctcctcgggctt
tccgtag