Gchil3203.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3203.t2
Unique NameGchil3203.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:890962..891361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3203Gchil3203Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 890962..892806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3203.t2Gchil3203.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 890962..891361 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3203.t2.start1Gchil3203.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 890962..890964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3203.t2.CDS1Gchil3203.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 890962..891218 +
Gchil3203.t2.CDS2Gchil3203.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 891328..891361 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3203.t2.exon1Gchil3203.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 890962..891218 +
Gchil3203.t2.exon2Gchil3203.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 891328..891361 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3203.t2.intron1Gchil3203.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 891219..891327 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3203.t2.stop1Gchil3203.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 891359..891361 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3203.t2 ID=Gchil3203.t2|Name=Gchil3203.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=97bp
MVSVEEGLSSEAAEQPETSAPAPNSQHYDQKDQQQGSGEHEVKPNSSAEE
RYQPERLPVSRNRMYLMVMADFGLSFVWLCKYAVATLVHFFRISFG*
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spliced messenger RNA

>Gchil3203.t2 ID=Gchil3203.t2|Name=Gchil3203.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp|location=Sequence derived from alignment at tig00004382_pilon:890962..891361+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCGTCGAAGAAGGCCTCTCATCAGAGGCTGCTGAACAGCCCGA
AACGTCCGCCCCTGCTCCAAACTCACAACATTACGATCAAAAGGACCAAC
AACAAGGTAGCGGAGAGCATGAAGTCAAGCCAAATAGCTCCGCTGAGGAG
CGCTACCAACCGGAACGTCTCCCAGTTTCTAGAAATCGAATGTACTTGAT
GGTCATGGCAGACTTTGGGCTTTCCTTTGTTTGGCTGTGTAAATATGCCG
TCGCCACGCTGGTCCATTTCTTTCGCATATCGTTTGGATAA
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protein sequence of Gchil3203.t2

>Gchil3203.t2 ID=Gchil3203.t2|Name=Gchil3203.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=97bp
MVSVEEGLSSEAAEQPETSAPAPNSQHYDQKDQQQGSGEHEVKPNSSAEE
RYQPERLPVSRNRMYLMVMADFGLSFVWLCKYAVATLVHFFRISFG*
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mRNA from alignment at tig00004382_pilon:890962..891361+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3203.t2 ID=Gchil3203.t2|Name=Gchil3203.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=400bp|location=Sequence derived from alignment at tig00004382_pilon:890962..891361+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTCCGTCGAAGAAGGCCTCTCATCAGAGGCTGCTGAACAGCCCGA
AACGTCCGCCCCTGCTCCAAACTCACAACATTACGATCAAAAGGACCAAC
AACAAGGTAGCGGAGAGCATGAAGTCAAGCCAAATAGCTCCGCTGAGGAG
CGCTACCAACCGGAACGTCTCCCAGTTTCTAGAAATCGAATGTACTTGAT
GGTCATGGCAGACTTTGGGCTTTCCTTTGTTTGGCTGTGTAAATATGCCG
TCGCCACGTAAGTTTCTCAACTCTCAAGCTGATCCTGATGATTGCGATGA
ACACAAACGAATTTGAAGTTCAACTAACCAGGGCTCTGTAGTCCATATTT
TCAACATTCTCTAAAGGCTGGTCCATTTCTTTCGCATATCGTTTGGATAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:890962..891361+

>Gchil3203.t2 ID=Gchil3203.t2|Name=Gchil3203.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=291bp|location=Sequence derived from alignment at tig00004382_pilon:890962..891361+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTCCGTCGAAGAAGGCCTCTCATCAGAGGCTGCTGAACAGCCCGA
AACGTCCGCCCCTGCTCCAAACTCACAACATTACGATCAAAAGGACCAAC
AACAAGGTAGCGGAGAGCATGAAGTCAAGCCAAATAGCTCCGCTGAGGAG
CGCTACCAACCGGAACGTCTCCCAGTTTCTAGAAATCGAATGTACTTGAT
GGTCATGGCAGACTTTGGGCTTTCCTTTGTTTGGCTGTGTAAATATGCCG
TCGCCACGCTGGTCCATTTCTTTCGCATATCGTTTGGATAA
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