Gchil3200.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3200.t1
Unique NameGchil3200.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:816397..817456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JAT1
Preferred namePRE2
PFAMsProteasome
Max annot lvl4751|Fungi
KEGG koko:K02737
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0022607,GO:0030071,GO:0030163,GO:0031331,GO:0031597,GO:0031984,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0080129,GO:0090068,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue9.86e-113
EggNOG OGsCOG0638@1|root,KOG0175@2759|Eukaryota,38EKC@33154|Opisthokonta,3NXDJ@4751|Fungi,1GT0C@112252|Fungi incertae sedis
EC3.4.25.1
DescriptionProteasome subunit
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3200Gchil3200Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 816397..817456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3200.t1Gchil3200.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 816397..817456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3200.t1.stop1Gchil3200.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 816397..816399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3200.t1.CDS1Gchil3200.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 816397..816793 -
Gchil3200.t1.CDS2Gchil3200.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 816861..816954 -
Gchil3200.t1.CDS3Gchil3200.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 817060..817456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3200.t1.exon1Gchil3200.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 816397..816793 -
Gchil3200.t1.exon2Gchil3200.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 816861..816954 -
Gchil3200.t1.exon3Gchil3200.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 817060..817456 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3200.t1.intron1Gchil3200.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 816794..816860 -
Gchil3200.t1.intron2Gchil3200.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 816955..817059 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3200.t1.start1Gchil3200.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 817454..817456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3200.t1 ID=Gchil3200.t1|Name=Gchil3200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=296bp
MPSLDFLDEDLSINGSGRNGPDLDLEELSYSLGNELRLPTVERPSHFLRD
AFVNVPEKDRLKFAHGTTTLAFSFQGGIIVAVDSRASMGQYIGSGTVKKI
IEINPYLLGTMAGGAADCSFWERDLGKRCRLYELRNKERISVAAASKLLA
NTVYYYRGMGLSMGTMICGWDKTGPNIFYVDSDGTRFKGHIFSVGSGSTF
AYGVLDQGYSYEMSVEDAIKLGQKSIYHATHRDAASGGVINCYHVKEDGW
VKISSEDMMIQHRARLIERKAEDEASDSAKTTTVSQNTPVQTVTA*
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spliced messenger RNA

>Gchil3200.t1 ID=Gchil3200.t1|Name=Gchil3200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00004382_pilon:816397..817456- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCTTGGATTTCCTCGATGAAGACCTGTCTATCAATGGCAGCGG
AAGAAATGGTCCTGATCTAGATCTTGAAGAATTATCTTACTCACTCGGAA
ATGAATTACGACTTCCGACAGTCGAACGACCATCCCATTTTCTTCGCGAC
GCTTTTGTAAACGTGCCTGAGAAAGATAGGCTCAAGTTCGCGCACGGTAC
AACCACACTCGCATTTTCTTTTCAGGGGGGAATTATCGTTGCTGTTGACT
CCCGTGCTAGCATGGGACAGTATATTGGAAGTGGAACTGTGAAGAAGATC
ATAGAGATTAACCCGTACCTGTTGGGTACTATGGCAGGCGGCGCGGCAGA
CTGCAGTTTCTGGGAGCGCGATCTCGGAAAGCGATGCAGGCTATACGAAC
TTCGAAACAAAGAACGTATATCTGTTGCAGCCGCATCGAAGCTACTAGCG
AATACTGTATACTACTACCGAGGCATGGGTCTTTCAATGGGAACAATGAT
CTGTGGATGGGATAAGACAGGCCCCAATATTTTCTACGTTGATTCTGACG
GGACGAGATTCAAAGGTCACATCTTCTCTGTAGGCTCGGGGTCGACGTTT
GCGTATGGTGTGTTGGACCAAGGATATTCATACGAAATGTCCGTGGAGGA
CGCCATCAAGCTTGGCCAAAAGTCTATATATCATGCAACGCATCGTGATG
CCGCTTCCGGCGGTGTCATTAACTGCTATCACGTAAAGGAAGATGGGTGG
GTGAAGATATCATCGGAAGACATGATGATCCAGCACCGAGCGCGTCTGAT
CGAAAGAAAAGCTGAAGATGAAGCGTCTGATTCTGCCAAAACAACGACAG
TCTCTCAAAATACCCCTGTTCAGACTGTGACAGCGTAA
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protein sequence of Gchil3200.t1

>Gchil3200.t1 ID=Gchil3200.t1|Name=Gchil3200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=296bp
MPSLDFLDEDLSINGSGRNGPDLDLEELSYSLGNELRLPTVERPSHFLRD
AFVNVPEKDRLKFAHGTTTLAFSFQGGIIVAVDSRASMGQYIGSGTVKKI
IEINPYLLGTMAGGAADCSFWERDLGKRCRLYELRNKERISVAAASKLLA
NTVYYYRGMGLSMGTMICGWDKTGPNIFYVDSDGTRFKGHIFSVGSGSTF
AYGVLDQGYSYEMSVEDAIKLGQKSIYHATHRDAASGGVINCYHVKEDGW
VKISSEDMMIQHRARLIERKAEDEASDSAKTTTVSQNTPVQTVTA*
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mRNA from alignment at tig00004382_pilon:816397..817456-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3200.t1 ID=Gchil3200.t1|Name=Gchil3200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1060bp|location=Sequence derived from alignment at tig00004382_pilon:816397..817456- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAGCTTGGATTTCCTCGATGAAGACCTGTCTATCAATGGCAGCGG
AAGAAATGGTCCTGATCTAGATCTTGAAGAATTATCTTACTCACTCGGAA
ATGAATTACGACTTCCGACAGTCGAACGACCATCCCATTTTCTTCGCGAC
GCTTTTGTAAACGTGCCTGAGAAAGATAGGCTCAAGTTCGCGCACGGTAC
AACCACACTCGCATTTTCTTTTCAGGGGGGAATTATCGTTGCTGTTGACT
CCCGTGCTAGCATGGGACAGTATATTGGAAGTGGAACTGTGAAGAAGATC
ATAGAGATTAACCCGTACCTGTTGGGTACTATGGCAGGCGGCGCGGCAGA
CTGCAGTTTCTGGGAGCGCGATCTCGGAAAGCGATGCAGGCTATACGGTA
TGTCATATTTTACTTCAGTTTATGTCTAAGTTCAACAAAGTATTGTTGTC
CGTGATCCGCTAACTTGAAGGATATCAATTGGGTTGAATCGAAACGGAAC
AGAACTTCGAAACAAAGAACGTATATCTGTTGCAGCCGCATCGAAGCTAC
TAGCGAATACTGTATACTACTACCGAGGCATGGGTCTTTCAATGGGGTAA
GTGGCCACTTCGATTTAGTTCAAGTATACAAATTACTAACCTTACTCACT
CTTTTCAAATCAGAACAATGATCTGTGGATGGGATAAGACAGGCCCCAAT
ATTTTCTACGTTGATTCTGACGGGACGAGATTCAAAGGTCACATCTTCTC
TGTAGGCTCGGGGTCGACGTTTGCGTATGGTGTGTTGGACCAAGGATATT
CATACGAAATGTCCGTGGAGGACGCCATCAAGCTTGGCCAAAAGTCTATA
TATCATGCAACGCATCGTGATGCCGCTTCCGGCGGTGTCATTAACTGCTA
TCACGTAAAGGAAGATGGGTGGGTGAAGATATCATCGGAAGACATGATGA
TCCAGCACCGAGCGCGTCTGATCGAAAGAAAAGCTGAAGATGAAGCGTCT
GATTCTGCCAAAACAACGACAGTCTCTCAAAATACCCCTGTTCAGACTGT
GACAGCGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:816397..817456-

>Gchil3200.t1 ID=Gchil3200.t1|Name=Gchil3200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00004382_pilon:816397..817456- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAGCTTGGATTTCCTCGATGAAGACCTGTCTATCAATGGCAGCGG
AAGAAATGGTCCTGATCTAGATCTTGAAGAATTATCTTACTCACTCGGAA
ATGAATTACGACTTCCGACAGTCGAACGACCATCCCATTTTCTTCGCGAC
GCTTTTGTAAACGTGCCTGAGAAAGATAGGCTCAAGTTCGCGCACGGTAC
AACCACACTCGCATTTTCTTTTCAGGGGGGAATTATCGTTGCTGTTGACT
CCCGTGCTAGCATGGGACAGTATATTGGAAGTGGAACTGTGAAGAAGATC
ATAGAGATTAACCCGTACCTGTTGGGTACTATGGCAGGCGGCGCGGCAGA
CTGCAGTTTCTGGGAGCGCGATCTCGGAAAGCGATGCAGGCTATACGAAC
TTCGAAACAAAGAACGTATATCTGTTGCAGCCGCATCGAAGCTACTAGCG
AATACTGTATACTACTACCGAGGCATGGGTCTTTCAATGGGAACAATGAT
CTGTGGATGGGATAAGACAGGCCCCAATATTTTCTACGTTGATTCTGACG
GGACGAGATTCAAAGGTCACATCTTCTCTGTAGGCTCGGGGTCGACGTTT
GCGTATGGTGTGTTGGACCAAGGATATTCATACGAAATGTCCGTGGAGGA
CGCCATCAAGCTTGGCCAAAAGTCTATATATCATGCAACGCATCGTGATG
CCGCTTCCGGCGGTGTCATTAACTGCTATCACGTAAAGGAAGATGGGTGG
GTGAAGATATCATCGGAAGACATGATGATCCAGCACCGAGCGCGTCTGAT
CGAAAGAAAAGCTGAAGATGAAGCGTCTGATTCTGCCAAAACAACGACAG
TCTCTCAAAATACCCCTGTTCAGACTGTGACAGCGTAA
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